Wall clock time and date at job start Tue Mar 31 2020 22:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00178 * 2 1 4 4 H 1.48502 * 109.46959 * 269.99804 * 3 2 1 5 5 H 1.48496 * 109.47441 * 29.99691 * 3 2 1 6 6 H 1.48495 * 109.47365 * 149.99902 * 3 2 1 7 7 C 1.38796 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00217 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00324 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47166 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00099 * 359.97438 * 11 10 9 13 13 N 1.34785 * 119.99841 * 179.97438 * 11 10 9 14 14 C 1.46923 * 120.62853 * 179.97438 * 13 11 10 15 15 C 1.53194 * 108.77636 * 233.63053 * 14 13 11 16 16 C 1.53044 * 109.30897 * 305.36525 * 15 14 13 17 17 N 1.46502 * 109.45652 * 181.38557 * 16 15 14 18 18 C 1.34810 * 126.59499 * 275.02713 * 17 16 15 19 19 C 1.36596 * 106.84096 * 180.02562 * 18 17 16 20 20 C 1.47528 * 125.77210 * 179.97438 * 19 18 17 21 21 N 1.34775 * 120.00015 * 179.97438 * 20 19 18 22 22 O 1.21599 * 119.99623 * 359.97438 * 20 19 18 23 23 N 1.34394 * 108.45958 * 359.97438 * 19 18 17 24 24 N 1.28764 * 109.52320 * 0.02562 * 23 19 18 25 25 C 1.53042 * 109.53713 * 61.36976 * 16 15 14 26 26 C 1.46923 * 120.63020 * 0.02562 * 13 11 10 27 27 H 0.97007 * 120.00210 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47352 * 59.99680 * 10 9 7 29 29 H 1.09006 * 109.47108 * 299.99839 * 10 9 7 30 30 H 1.09003 * 109.58361 * 113.84334 * 14 13 11 31 31 H 1.08995 * 109.59126 * 353.41974 * 14 13 11 32 32 H 1.09002 * 109.49769 * 185.41610 * 15 14 13 33 33 H 1.08993 * 109.49916 * 65.31944 * 15 14 13 34 34 H 1.08999 * 109.46127 * 301.35442 * 16 15 14 35 35 H 1.08001 * 126.58390 * 0.02562 * 18 17 16 36 36 H 0.97003 * 119.99748 * 359.97438 * 21 20 19 37 37 H 0.97004 * 119.99922 * 179.97438 * 21 20 19 38 38 H 1.08998 * 109.49973 * 58.57783 * 25 16 15 39 39 H 1.09001 * 109.49490 * 178.68140 * 25 16 15 40 40 H 1.08999 * 109.58942 * 246.15926 * 26 13 11 41 41 H 1.08998 * 109.58986 * 6.58324 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8914 0.0021 11 6 1.9872 -5.3027 0.0030 12 8 0.7909 -5.5023 0.0030 13 7 2.8440 -6.3432 0.0037 14 6 2.3438 -7.7247 0.0051 15 6 2.9850 -8.4800 1.1735 16 6 4.5079 -8.3629 1.0770 17 7 5.1255 -9.1119 2.1743 18 6 5.3496 -8.6649 3.4262 19 6 5.9409 -9.6879 4.1117 20 6 6.3658 -9.6476 5.5239 21 7 6.9400 -10.7296 6.0860 22 8 6.1979 -8.6381 6.1806 23 7 6.0702 -10.7373 3.2821 24 7 5.5972 -10.4313 2.1242 25 6 4.9151 -6.8907 1.1721 26 6 4.2957 -6.1174 0.0042 27 1 -0.4851 0.8401 -0.0004 28 1 3.1237 -3.7310 0.8925 29 1 3.1250 -3.7318 -0.8875 30 1 2.6096 -8.2104 -0.9338 31 1 1.2603 -7.7210 0.1231 32 1 2.6974 -9.5305 1.1293 33 1 2.6459 -8.0489 2.1154 34 1 4.8439 -8.7717 0.1241 35 1 5.1080 -7.6860 3.8131 36 1 7.0735 -11.5350 5.5621 37 1 7.2197 -10.7029 7.0144 38 1 4.5577 -6.4745 2.1139 39 1 6.0012 -6.8100 1.1268 40 1 4.7210 -6.4717 -0.9347 41 1 4.5000 -5.0532 0.1217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001633006151.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:51 Heat of formation + Delta-G solvation = -6.771972 kcal Electronic energy + Delta-G solvation = -26154.913888 eV Core-core repulsion = 22196.922975 eV Total energy + Delta-G solvation = -3957.990913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.36858 -41.21933 -40.17254 -38.77290 -35.81588 -34.65975 -34.57283 -33.09932 -32.16835 -31.84413 -30.39481 -27.68520 -26.71154 -25.17520 -24.34605 -23.74261 -21.92640 -21.67330 -20.40119 -19.58446 -19.31198 -18.31182 -17.79671 -17.21806 -17.08689 -16.89527 -16.85205 -16.67617 -15.93450 -15.74860 -15.64593 -15.34077 -15.16693 -15.03153 -14.60956 -14.48227 -14.39092 -13.55642 -13.51871 -13.33722 -13.25189 -13.14632 -12.88699 -12.62299 -12.52152 -12.39041 -12.34847 -11.90558 -11.71214 -11.46147 -11.29482 -11.13339 -10.88432 -10.77657 -10.35681 -10.23798 -9.80770 -8.65767 -8.33739 -6.11486 0.07984 0.56748 0.91953 1.26515 1.43201 1.46933 1.56452 1.58073 2.05445 2.19777 2.28329 2.43795 3.00859 3.14780 3.19170 3.25022 3.44737 3.68409 3.74634 3.76957 3.85779 3.92001 4.08060 4.16645 4.22694 4.28607 4.41482 4.49510 4.57384 4.60780 4.73455 4.75728 4.82810 4.88816 5.08827 5.35981 5.43180 5.49338 5.81264 6.19973 6.22107 6.28179 6.84933 7.08054 7.12434 7.22315 8.75271 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.002264 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.043110 B =12364.361642 C =13450.729249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 0.997 3.003 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.257 1.257 7 C -0.542 4.542 8 H 0.085 0.915 9 S -0.156 6.156 10 C -0.126 4.126 11 C 0.536 3.464 12 O -0.564 6.564 13 N -0.610 5.610 14 C 0.118 3.882 15 C -0.134 4.134 16 C 0.153 3.847 17 N -0.341 5.341 18 C 0.104 3.896 19 C -0.125 4.125 20 C 0.610 3.390 21 N -0.821 5.821 22 O -0.578 6.578 23 N -0.216 5.216 24 N -0.079 5.079 25 C -0.143 4.143 26 C 0.108 3.892 27 H 0.270 0.730 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.140 0.860 35 H 0.219 0.781 36 H 0.418 0.582 37 H 0.417 0.583 38 H 0.080 0.920 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.837 -22.128 4.018 28.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.180 1.180 7 C -0.690 4.690 8 H 0.103 0.897 9 S 0.071 5.929 10 C -0.277 4.277 11 C 0.324 3.676 12 O -0.443 6.443 13 N -0.345 5.345 14 C -0.005 4.005 15 C -0.174 4.174 16 C 0.052 3.948 17 N -0.125 5.125 18 C -0.054 4.054 19 C -0.265 4.265 20 C 0.393 3.607 21 N -0.385 5.385 22 O -0.457 6.457 23 N -0.089 5.089 24 N -0.058 5.058 25 C -0.182 4.182 26 C -0.015 4.015 27 H 0.079 0.921 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.157 0.843 35 H 0.235 0.765 36 H 0.249 0.751 37 H 0.250 0.750 38 H 0.099 0.901 39 H 0.132 0.868 40 H 0.125 0.875 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 15.932 -22.896 3.366 28.096 hybrid contribution 1.186 1.759 0.780 2.260 sum 17.118 -21.137 4.146 27.514 Atomic orbital electron populations 1.70183 1.07988 1.28535 1.48126 1.26113 0.95932 1.03324 0.93862 0.84975 0.78264 0.76140 0.78759 1.19342 1.20605 1.18045 1.23186 0.95354 0.91855 1.58620 0.89700 1.85647 1.10813 0.99426 1.97034 1.23398 1.03368 0.94220 1.06672 1.20120 0.85941 0.86658 0.74887 1.90696 1.17412 1.85734 1.50409 1.48148 1.07341 1.05376 1.73651 1.21596 1.00126 0.79897 0.98874 1.22286 0.92715 1.02486 0.99893 1.21912 0.92705 0.91688 0.88466 1.50832 1.40334 1.11425 1.09865 1.23684 0.95364 1.01604 0.84725 1.21450 1.14678 0.92977 0.97371 1.16851 0.76545 0.83398 0.83945 1.43454 1.62119 1.15671 1.17224 1.90869 1.58047 1.33231 1.63593 1.74561 1.12487 1.23810 0.98077 1.81956 1.16219 0.93052 1.14614 1.22401 1.03625 0.91315 1.00897 1.21976 0.77459 1.02584 0.99448 0.92085 0.87155 0.86996 0.88089 0.90310 0.88537 0.91527 0.84252 0.76480 0.75059 0.74998 0.90100 0.86809 0.87455 0.87908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.16 13.22 21.65 0.29 -54.87 16 2 C 0.01 0.69 5.49 84.86 0.47 1.15 16 3 Si 1.00 42.53 29.55 68.60 2.03 44.56 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.54 -29.85 9.50 67.95 0.65 -29.21 16 8 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 9 S -0.16 -8.36 20.57 -56.49 -1.16 -9.52 16 10 C -0.13 -4.52 4.50 71.24 0.32 -4.20 16 11 C 0.54 17.83 7.72 87.66 0.68 18.50 16 12 O -0.56 -24.50 15.28 -3.02 -0.05 -24.55 16 13 N -0.61 -12.54 2.97 -819.00 -2.43 -14.98 16 14 C 0.12 1.96 6.43 86.36 0.56 2.51 16 15 C -0.13 -1.69 5.68 30.67 0.17 -1.52 16 16 C 0.15 1.46 3.19 45.02 0.14 1.60 16 17 N -0.34 -4.73 3.54 -326.40 -1.16 -5.89 16 18 C 0.10 1.58 10.41 83.85 0.87 2.45 16 19 C -0.13 -2.25 6.99 40.82 0.29 -1.97 16 20 C 0.61 11.37 8.09 86.69 0.70 12.08 16 21 N -0.82 -8.96 8.87 -175.81 -1.56 -10.52 16 22 O -0.58 -14.81 17.70 -4.03 -0.07 -14.88 16 23 N -0.22 -4.06 12.04 -49.99 -0.60 -4.66 16 24 N -0.08 -1.45 13.78 37.02 0.51 -0.94 16 25 C -0.14 -1.20 4.99 30.66 0.15 -1.05 16 26 C 0.11 1.24 6.34 86.35 0.55 1.79 16 27 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 28 H 0.11 3.52 7.69 -2.39 -0.02 3.50 16 29 H 0.11 3.55 7.94 -2.39 -0.02 3.53 16 30 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.80 7.00 -2.39 -0.02 1.78 16 32 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.22 2.53 7.39 -2.91 -0.02 2.51 16 36 H 0.42 3.19 8.52 -92.71 -0.79 2.41 16 37 H 0.42 3.05 8.93 -92.71 -0.83 2.22 16 38 H 0.08 0.81 7.30 -2.39 -0.02 0.79 16 39 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.10 1.28 5.93 -2.39 -0.01 1.27 16 Total: -1.00 -83.73 363.85 0.82 -82.91 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -0.51 Total: 11.18 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 5.54 Total: 2.15 kcal Atomic # 7 Polarization: -86.90 SS G_CDS: -4.96 Total: -91.86 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -0.12 Total: -39.43 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -83.73 0.82 -82.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633006151.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.142 kcal (2) G-P(sol) polarization free energy of solvation -83.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds