Wall clock time and date at job start Tue Mar 31 2020 22:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86802 * 120.00232 * 2 1 4 4 H 1.48501 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47350 * 300.00540 * 3 2 1 6 6 H 1.48513 * 109.46969 * 60.00276 * 3 2 1 7 7 C 1.38953 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00082 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99710 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99751 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00170 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99842 * 180.02562 * 10 9 7 13 13 N 1.46502 * 109.47305 * 180.02562 * 12 10 9 14 14 C 1.34771 * 120.00115 * 180.02562 * 13 12 10 15 15 O 1.21588 * 120.00204 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00000 * 180.02562 * 14 13 12 17 17 C 1.46495 * 120.00169 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47495 * 179.97438 * 17 16 14 19 19 H 1.09007 * 109.82292 * 59.42656 * 18 17 16 20 20 C 1.54429 * 109.92936 * 180.32903 * 18 17 16 21 21 C 1.55306 * 102.23000 * 140.87644 * 20 18 17 22 22 C 1.54947 * 100.97824 * 325.92130 * 21 20 18 23 23 H 1.09003 * 110.30537 * 277.40785 * 22 21 20 24 24 C 1.52995 * 110.30771 * 155.34129 * 22 21 20 25 25 F 1.39891 * 109.47605 * 59.99865 * 24 22 21 26 26 F 1.39907 * 109.46944 * 180.02562 * 24 22 21 27 27 F 1.39903 * 109.47130 * 299.99209 * 24 22 21 28 28 O 1.43234 * 109.82873 * 298.54624 * 18 17 16 29 29 H 0.97003 * 119.99912 * 359.97438 * 1 2 3 30 30 H 0.96995 * 119.99746 * 0.02562 * 9 7 2 31 31 H 1.08991 * 109.47267 * 60.00011 * 12 10 9 32 32 H 1.09000 * 109.46923 * 299.99818 * 12 10 9 33 33 H 0.97001 * 119.99482 * 359.97438 * 13 12 10 34 34 H 0.96995 * 120.00003 * 359.97438 * 16 14 13 35 35 H 1.09002 * 109.47575 * 59.99150 * 17 16 14 36 36 H 1.09007 * 109.47013 * 299.99470 * 17 16 14 37 37 H 1.09001 * 110.83577 * 22.70326 * 20 18 17 38 38 H 1.09006 * 110.89055 * 259.07069 * 20 18 17 39 39 H 1.09002 * 111.12770 * 207.97856 * 21 20 18 40 40 H 1.08995 * 111.12571 * 83.85771 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5578 -0.0021 12 6 1.2437 -4.8629 -0.0022 13 7 2.1957 -5.9765 -0.0027 14 6 1.7464 -7.2471 -0.0038 15 8 0.5510 -7.4693 -0.0039 16 7 2.6222 -8.2716 -0.0037 17 6 2.1339 -9.6527 -0.0054 18 6 3.3238 -10.6145 -0.0056 19 1 3.9386 -10.4421 0.8779 20 6 2.8207 -12.0744 -0.0158 21 6 3.8308 -12.7639 -0.9730 22 6 4.1148 -11.6185 -1.9771 23 1 3.3339 -11.5790 -2.7366 24 6 5.4829 -11.8145 -2.6332 25 9 5.5023 -13.0354 -3.3158 26 9 5.7214 -10.7716 -3.5348 27 9 6.4766 -11.8150 -1.6483 28 8 4.1072 -10.4179 -1.1885 29 1 -0.4850 0.8401 0.0004 30 1 0.3534 -2.3906 -0.0005 31 1 0.6167 -4.9201 -0.8919 32 1 0.6174 -4.9212 0.8880 33 1 3.1493 -5.7992 -0.0030 34 1 3.5758 -8.0943 -0.0032 35 1 1.5292 -9.8233 -0.8962 36 1 1.5274 -9.8248 0.8838 37 1 1.8075 -12.1326 -0.4137 38 1 2.8723 -12.5103 0.9820 39 1 3.3774 -13.6204 -1.4720 40 1 4.7376 -13.0557 -0.4433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001635083426.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:47 Heat of formation + Delta-G solvation = -267.897666 kcal Electronic energy + Delta-G solvation = -28946.451685 eV Core-core repulsion = 23960.235150 eV Total energy + Delta-G solvation = -4986.216535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.48382 -48.03297 -47.93552 -40.52109 -39.60781 -38.16518 -34.98944 -34.35148 -33.62125 -33.01164 -31.54564 -31.30354 -28.24645 -26.81021 -24.66825 -23.95615 -22.50810 -21.68529 -20.63502 -19.56202 -19.14688 -18.68701 -18.49574 -18.34999 -17.96147 -17.16189 -16.39363 -16.11521 -15.57188 -15.39358 -14.91832 -14.77364 -14.68838 -14.61805 -14.42144 -14.34259 -14.14169 -14.11008 -14.09862 -14.01270 -13.66677 -13.45670 -13.19265 -12.77291 -12.53040 -12.15906 -12.00673 -11.94474 -11.80116 -11.61633 -11.59932 -11.12739 -10.39355 -10.34264 -10.31068 -10.04848 -9.62799 -9.17923 -8.60189 -8.58435 -8.07968 -6.49641 -3.91445 2.05532 2.66273 2.92385 3.11731 3.23860 3.26740 3.30900 3.41118 3.43840 3.77478 3.81692 3.97616 4.03893 4.11757 4.23893 4.35360 4.47064 4.58303 4.76063 4.91983 4.92742 5.02964 5.13153 5.19183 5.26597 5.38833 5.61456 5.93232 6.02862 6.09168 6.10758 6.48687 6.77705 7.10718 7.48148 7.94816 8.25258 8.47445 8.80414 9.06865 9.41802 9.89772 10.67395 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020822 B = 0.001876 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.429720 B =14923.473548 C =15855.548039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.550 5.550 10 C 0.429 3.571 11 O -0.597 6.597 12 C 0.129 3.871 13 N -0.724 5.724 14 C 0.706 3.294 15 O -0.601 6.601 16 N -0.745 5.745 17 C 0.134 3.866 18 C 0.067 3.933 19 H 0.099 0.901 20 C -0.142 4.142 21 C -0.151 4.151 22 C 0.037 3.963 23 H 0.118 0.882 24 C 0.456 3.544 25 F -0.178 7.178 26 F -0.174 7.174 27 F -0.176 7.176 28 O -0.349 6.349 29 H 0.273 0.727 30 H 0.396 0.604 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.407 0.593 34 H 0.401 0.599 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.846 -28.560 -1.519 29.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.185 5.185 10 C 0.215 3.785 11 O -0.483 6.483 12 C 0.000 4.000 13 N -0.381 5.381 14 C 0.405 3.595 15 O -0.480 6.480 16 N -0.402 5.402 17 C 0.008 3.992 18 C 0.009 3.991 19 H 0.117 0.883 20 C -0.180 4.180 21 C -0.188 4.188 22 C -0.023 4.023 23 H 0.136 0.864 24 C 0.402 3.598 25 F -0.160 7.160 26 F -0.155 7.155 27 F -0.158 7.158 28 O -0.268 6.268 29 H 0.083 0.917 30 H 0.230 0.770 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.245 0.755 34 H 0.235 0.765 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.536 -28.359 -1.581 28.938 hybrid contribution 0.778 0.882 -0.145 1.185 sum 6.315 -27.478 -1.726 28.247 Atomic orbital electron populations 1.69622 1.06002 1.28379 1.49523 1.25326 0.95674 0.99929 0.96879 0.85759 0.79685 0.80841 0.77800 1.19143 1.20626 1.20642 1.19778 0.93478 0.81992 1.48052 0.87640 1.41794 1.09491 1.04459 1.62774 1.19776 0.88302 0.85027 0.85424 1.90495 1.13759 1.86861 1.57235 1.20781 0.91214 0.84859 1.03113 1.44763 1.11293 1.03310 1.78722 1.15825 0.85115 0.80601 0.77953 1.90899 1.14070 1.84341 1.58709 1.44877 1.09374 1.04674 1.81252 1.21527 0.94770 0.79760 1.03097 1.23239 0.92550 0.94975 0.88325 0.88315 1.23112 1.00146 0.93042 1.01665 1.23355 1.01561 0.97520 0.96382 1.24138 0.92548 0.88453 0.97145 0.86435 1.20446 0.88221 0.73952 0.77214 1.93196 1.96886 1.45015 1.80854 1.93240 1.95367 1.58087 1.68856 1.93198 1.64665 1.96114 1.61784 1.88570 1.72029 1.31804 1.34356 0.91668 0.77022 0.90027 0.90022 0.75523 0.76497 0.91114 0.90140 0.89001 0.88382 0.87967 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.04 13.05 55.50 0.72 -23.31 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.68 29.55 -169.99 -5.02 15.65 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 8 H 0.11 3.01 7.16 -52.49 -0.38 2.64 16 9 N -0.55 -13.77 5.29 -10.96 -0.06 -13.83 16 10 C 0.43 9.96 7.85 -10.98 -0.09 9.87 16 11 O -0.60 -15.45 15.24 5.55 0.08 -15.37 16 12 C 0.13 2.43 6.15 -5.19 -0.03 2.40 16 13 N -0.72 -12.40 5.53 -66.42 -0.37 -12.77 16 14 C 0.71 11.50 8.57 -86.92 -0.74 10.76 16 15 O -0.60 -11.65 16.34 5.29 0.09 -11.56 16 16 N -0.75 -8.92 5.47 -65.23 -0.36 -9.27 16 17 C 0.13 1.21 5.24 -4.04 -0.02 1.19 16 18 C 0.07 0.43 3.59 -25.98 -0.09 0.33 16 19 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 20 C -0.14 -0.51 6.55 -24.76 -0.16 -0.67 16 21 C -0.15 -0.57 6.31 -24.48 -0.15 -0.73 16 22 C 0.04 0.24 3.42 -25.71 -0.09 0.15 16 23 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 24 C 0.46 3.72 2.90 37.15 0.11 3.82 16 25 F -0.18 -1.35 17.07 2.25 0.04 -1.31 16 26 F -0.17 -1.81 17.31 2.25 0.04 -1.77 16 27 F -0.18 -1.61 16.58 2.25 0.04 -1.57 16 28 O -0.35 -2.97 10.43 -35.23 -0.37 -3.34 16 29 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.40 9.52 7.90 -40.82 -0.32 9.20 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 33 H 0.41 6.86 7.45 -40.82 -0.30 6.55 16 34 H 0.40 4.22 8.41 -40.82 -0.34 3.88 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 37 H 0.09 0.28 7.85 -51.93 -0.41 -0.13 16 38 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.09 0.36 7.54 -51.93 -0.39 -0.03 16 LS Contribution 358.71 15.07 5.41 5.41 Total: -1.00 -33.59 358.71 -5.93 -39.52 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -4.66 Total: 14.30 kcal Atomic # 6 Polarization: 20.74 SS G_CDS: -1.51 Total: 19.23 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -0.06 Total: -59.18 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.20 Total: -30.27 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.11 Total: -4.65 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.59 -5.93 -39.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635083426.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -228.374 kcal (2) G-P(sol) polarization free energy of solvation -33.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -261.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -267.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds