Wall clock time and date at job start Tue Mar 31 2020 22:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86802 * 120.00232 * 2 1 4 4 H 1.48501 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47350 * 300.00540 * 3 2 1 6 6 H 1.48513 * 109.46969 * 60.00276 * 3 2 1 7 7 C 1.38953 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00082 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99710 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99751 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00170 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99842 * 180.02562 * 10 9 7 13 13 N 1.46502 * 109.47305 * 180.02562 * 12 10 9 14 14 C 1.34771 * 120.00115 * 180.02562 * 13 12 10 15 15 O 1.21588 * 120.00204 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00000 * 180.02562 * 14 13 12 17 17 C 1.46495 * 120.00169 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47495 * 179.97438 * 17 16 14 19 19 H 1.09007 * 109.82292 * 59.42656 * 18 17 16 20 20 C 1.54429 * 109.92936 * 180.32903 * 18 17 16 21 21 C 1.55306 * 102.23000 * 140.87644 * 20 18 17 22 22 C 1.54947 * 100.97824 * 325.92130 * 21 20 18 23 23 H 1.09003 * 110.30537 * 277.40785 * 22 21 20 24 24 C 1.52995 * 110.30771 * 155.34129 * 22 21 20 25 25 F 1.39891 * 109.47605 * 59.99865 * 24 22 21 26 26 F 1.39907 * 109.46944 * 180.02562 * 24 22 21 27 27 F 1.39903 * 109.47130 * 299.99209 * 24 22 21 28 28 O 1.43234 * 109.82873 * 298.54624 * 18 17 16 29 29 H 0.97003 * 119.99912 * 359.97438 * 1 2 3 30 30 H 0.96995 * 119.99746 * 0.02562 * 9 7 2 31 31 H 1.08991 * 109.47267 * 60.00011 * 12 10 9 32 32 H 1.09000 * 109.46923 * 299.99818 * 12 10 9 33 33 H 0.97001 * 119.99482 * 359.97438 * 13 12 10 34 34 H 0.96995 * 120.00003 * 359.97438 * 16 14 13 35 35 H 1.09002 * 109.47575 * 59.99150 * 17 16 14 36 36 H 1.09007 * 109.47013 * 299.99470 * 17 16 14 37 37 H 1.09001 * 110.83577 * 22.70326 * 20 18 17 38 38 H 1.09006 * 110.89055 * 259.07069 * 20 18 17 39 39 H 1.09002 * 111.12770 * 207.97856 * 21 20 18 40 40 H 1.08995 * 111.12571 * 83.85771 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5578 -0.0021 12 6 1.2437 -4.8629 -0.0022 13 7 2.1957 -5.9765 -0.0027 14 6 1.7464 -7.2471 -0.0038 15 8 0.5510 -7.4693 -0.0039 16 7 2.6222 -8.2716 -0.0037 17 6 2.1339 -9.6527 -0.0054 18 6 3.3238 -10.6145 -0.0056 19 1 3.9386 -10.4421 0.8779 20 6 2.8207 -12.0744 -0.0158 21 6 3.8308 -12.7639 -0.9730 22 6 4.1148 -11.6185 -1.9771 23 1 3.3339 -11.5790 -2.7366 24 6 5.4829 -11.8145 -2.6332 25 9 5.5023 -13.0354 -3.3158 26 9 5.7214 -10.7716 -3.5348 27 9 6.4766 -11.8150 -1.6483 28 8 4.1072 -10.4179 -1.1885 29 1 -0.4850 0.8401 0.0004 30 1 0.3534 -2.3906 -0.0005 31 1 0.6167 -4.9201 -0.8919 32 1 0.6174 -4.9212 0.8880 33 1 3.1493 -5.7992 -0.0030 34 1 3.5758 -8.0943 -0.0032 35 1 1.5292 -9.8233 -0.8962 36 1 1.5274 -9.8248 0.8838 37 1 1.8075 -12.1326 -0.4137 38 1 2.8723 -12.5103 0.9820 39 1 3.3774 -13.6204 -1.4720 40 1 4.7376 -13.0557 -0.4433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001635083426.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:46 Heat of formation + Delta-G solvation = -294.222871 kcal Electronic energy + Delta-G solvation = -28947.593232 eV Core-core repulsion = 23960.235150 eV Total energy + Delta-G solvation = -4987.358082 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.14292 -48.67662 -48.64221 -41.34235 -40.69801 -39.93499 -36.29744 -35.87606 -35.24739 -33.43405 -33.36849 -32.18014 -29.48941 -27.90285 -26.30813 -24.79761 -22.96120 -22.26361 -21.85060 -21.35373 -20.11101 -19.76388 -19.57169 -19.28766 -19.01619 -17.76975 -17.51351 -17.40780 -16.91679 -16.57066 -16.40904 -15.96158 -15.73537 -15.57425 -15.51746 -15.38458 -15.10334 -15.08006 -14.84893 -14.79539 -14.74758 -14.33259 -13.99576 -13.91801 -13.62724 -13.54706 -13.26231 -12.91006 -12.89327 -12.48416 -12.44234 -12.35258 -12.11129 -11.89945 -11.57646 -11.41689 -10.88905 -10.55208 -10.42286 -10.09752 -9.80064 -8.50765 -6.00798 1.35406 1.42749 1.48568 1.56180 1.64302 1.90284 2.12978 2.25671 2.30497 2.71578 2.91803 3.05876 3.16458 3.30695 3.36503 3.46216 3.64809 3.78554 3.97586 4.13392 4.21698 4.26695 4.44317 4.47454 4.51987 4.62133 4.82736 4.83815 4.96245 5.16529 5.32048 5.39266 5.43465 5.68024 5.91484 5.95687 6.48795 7.02260 7.04160 7.43303 7.54069 7.95367 8.66426 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020822 B = 0.001876 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.429720 B =14923.473548 C =15855.548039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.012 4.012 3 Si 0.997 3.003 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.085 0.915 9 N -0.560 5.560 10 C 0.433 3.567 11 O -0.625 6.625 12 C 0.142 3.858 13 N -0.726 5.726 14 C 0.704 3.296 15 O -0.632 6.632 16 N -0.731 5.731 17 C 0.129 3.871 18 C 0.069 3.931 19 H 0.108 0.892 20 C -0.133 4.133 21 C -0.144 4.144 22 C 0.033 3.967 23 H 0.130 0.870 24 C 0.452 3.548 25 F -0.175 7.175 26 F -0.192 7.192 27 F -0.184 7.184 28 O -0.374 6.374 29 H 0.280 0.720 30 H 0.399 0.601 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.409 0.591 34 H 0.409 0.591 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.704 -29.784 -1.122 30.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.103 0.897 9 N -0.195 5.195 10 C 0.220 3.780 11 O -0.513 6.513 12 C 0.014 3.986 13 N -0.384 5.384 14 C 0.404 3.596 15 O -0.514 6.514 16 N -0.387 5.387 17 C 0.005 3.995 18 C 0.012 3.988 19 H 0.126 0.874 20 C -0.171 4.171 21 C -0.181 4.181 22 C -0.026 4.026 23 H 0.147 0.853 24 C 0.398 3.602 25 F -0.156 7.156 26 F -0.173 7.173 27 F -0.166 7.166 28 O -0.294 6.294 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.246 0.754 34 H 0.244 0.756 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.119 0.881 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.406 -29.631 -1.184 30.144 hybrid contribution 0.855 1.175 -0.291 1.482 sum 6.261 -28.457 -1.475 29.174 Atomic orbital electron populations 1.69684 1.06976 1.29562 1.49378 1.26134 0.96563 1.02681 0.95843 0.84809 0.78091 0.76727 0.78320 1.19507 1.19635 1.19576 1.19763 0.92927 0.83547 1.50283 0.89656 1.41839 1.09609 1.04580 1.63506 1.20446 0.88113 0.85956 0.83440 1.90471 1.15252 1.87569 1.57973 1.20579 0.90967 0.83011 1.04064 1.44714 1.10978 1.03415 1.79247 1.15941 0.85139 0.80780 0.77752 1.90874 1.15518 1.84732 1.60272 1.44897 1.09287 1.04970 1.79541 1.21777 0.96167 0.78502 1.03040 1.23300 0.91523 0.95998 0.87994 0.87433 1.23138 1.00327 0.90730 1.02869 1.23407 1.01818 0.97170 0.95701 1.24340 0.91382 0.89006 0.97886 0.85266 1.20800 0.88949 0.73581 0.76895 1.93197 1.96913 1.44693 1.80837 1.93201 1.95561 1.59005 1.69563 1.93177 1.65243 1.96133 1.62010 1.88544 1.72382 1.33228 1.35226 0.91067 0.76656 0.89122 0.88876 0.75354 0.75579 0.91844 0.89482 0.88118 0.86320 0.85821 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.89 13.05 21.66 0.28 -48.61 16 2 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 3 Si 1.00 42.08 29.55 68.60 2.03 44.10 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.34 -18.67 9.68 84.04 0.81 -17.85 16 8 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 9 N -0.56 -28.40 5.29 -306.98 -1.62 -30.02 16 10 C 0.43 20.29 7.85 87.66 0.69 20.98 16 11 O -0.62 -32.76 15.24 -3.05 -0.05 -32.81 16 12 C 0.14 5.32 6.15 85.63 0.53 5.85 16 13 N -0.73 -24.54 5.53 -482.30 -2.67 -27.21 16 14 C 0.70 22.42 8.57 179.06 1.53 23.95 16 15 O -0.63 -24.03 16.34 -3.99 -0.07 -24.10 16 16 N -0.73 -16.73 5.47 -478.54 -2.62 -19.35 16 17 C 0.13 2.15 5.24 86.38 0.45 2.60 16 18 C 0.07 0.74 3.59 31.08 0.11 0.86 16 19 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 20 C -0.13 -0.55 6.55 31.87 0.21 -0.34 16 21 C -0.14 -0.71 6.31 32.05 0.20 -0.51 16 22 C 0.03 0.37 3.42 31.26 0.11 0.48 16 23 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 24 C 0.45 7.03 2.90 71.98 0.21 7.24 16 25 F -0.17 -2.47 17.07 44.97 0.77 -1.70 16 26 F -0.19 -3.98 17.31 44.97 0.78 -3.21 16 27 F -0.18 -3.26 16.58 44.97 0.75 -2.51 16 28 O -0.37 -5.91 10.43 -148.98 -1.55 -7.46 16 29 H 0.28 13.92 8.31 -92.71 -0.77 13.14 16 30 H 0.40 19.42 7.90 -92.71 -0.73 18.69 16 31 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 32 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 33 H 0.41 13.67 7.45 -92.71 -0.69 12.98 16 34 H 0.41 8.21 8.41 -92.71 -0.78 7.43 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.10 0.28 7.85 -2.39 -0.02 0.27 16 38 H 0.12 0.06 8.14 -2.38 -0.02 0.05 16 39 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 40 H 0.09 0.49 7.54 -2.39 -0.02 0.48 16 Total: -1.00 -72.13 358.71 0.28 -71.85 By element: Atomic # 1 Polarization: 38.98 SS G_CDS: -1.07 Total: 37.91 kcal Atomic # 6 Polarization: 37.79 SS G_CDS: 5.32 Total: 43.11 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -6.63 Total: -125.19 kcal Atomic # 8 Polarization: -62.70 SS G_CDS: -1.67 Total: -64.37 kcal Atomic # 9 Polarization: -9.71 SS G_CDS: 2.29 Total: -7.42 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -72.13 0.28 -71.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635083426.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -222.374 kcal (2) G-P(sol) polarization free energy of solvation -72.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -294.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -294.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds