Wall clock time and date at job start Tue Mar 31 2020 22:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86799 * 119.99870 * 2 1 4 4 H 1.48500 * 109.46831 * 269.99315 * 3 2 1 5 5 H 1.48499 * 109.47355 * 29.99478 * 3 2 1 6 6 H 1.48500 * 109.46919 * 150.00007 * 3 2 1 7 7 C 1.38950 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00379 * 0.02562 * 7 2 1 9 9 N 1.37104 * 119.99462 * 180.02562 * 7 2 1 10 10 C 1.34779 * 119.99723 * 180.02562 * 9 7 2 11 11 O 1.21299 * 120.00006 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99917 * 180.02562 * 10 9 7 13 13 N 1.46502 * 109.47130 * 179.97438 * 12 10 9 14 14 C 1.34776 * 120.00249 * 180.02562 * 13 12 10 15 15 O 1.21589 * 119.99883 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00366 * 179.97438 * 14 13 12 17 17 C 1.46499 * 120.00160 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47012 * 179.97438 * 17 16 14 19 19 H 1.08998 * 109.87222 * 306.00691 * 18 17 16 20 20 C 1.54096 * 109.87660 * 184.99649 * 18 17 16 21 21 C 1.54817 * 104.18822 * 238.54762 * 20 18 17 22 22 C 1.54991 * 102.09285 * 339.11830 * 21 20 18 23 23 H 1.08998 * 110.62229 * 278.52472 * 22 21 20 24 24 C 1.52998 * 110.61844 * 155.52077 * 22 21 20 25 25 F 1.39905 * 109.46941 * 60.00571 * 24 22 21 26 26 F 1.39899 * 109.47175 * 180.02562 * 24 22 21 27 27 F 1.39896 * 109.47462 * 300.00332 * 24 22 21 28 28 O 1.43749 * 109.87535 * 67.16618 * 18 17 16 29 29 H 0.96999 * 119.99999 * 0.02562 * 1 2 3 30 30 H 0.96992 * 120.00109 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47466 * 59.99477 * 12 10 9 32 32 H 1.09005 * 109.46867 * 299.99480 * 12 10 9 33 33 H 0.97004 * 120.00128 * 359.97438 * 13 12 10 34 34 H 0.96999 * 119.99628 * 359.97438 * 16 14 13 35 35 H 1.08999 * 109.47076 * 59.99677 * 17 16 14 36 36 H 1.09000 * 109.46632 * 299.99794 * 17 16 14 37 37 H 1.09004 * 110.48850 * 119.87028 * 20 18 17 38 38 H 1.08996 * 110.48992 * 357.22609 * 20 18 17 39 39 H 1.08996 * 110.90849 * 97.31959 * 21 20 18 40 40 H 1.09004 * 110.90250 * 220.92384 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2033 0.0011 10 6 4.0538 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0011 12 6 5.5607 -2.3706 0.0022 13 7 6.0491 -3.7518 0.0026 14 6 7.3741 -3.9981 0.0042 15 8 8.1643 -3.0740 0.0048 16 7 7.8234 -5.2688 0.0050 17 6 9.2637 -5.5365 0.0061 18 6 9.5015 -7.0479 0.0076 19 1 8.9633 -7.5068 0.8369 20 6 11.0090 -7.3409 0.1350 21 6 11.3436 -8.1657 -1.1317 22 6 9.9511 -8.7076 -1.5436 23 1 9.6928 -9.5884 -0.9558 24 6 9.9183 -9.0275 -3.0394 25 9 10.8854 -9.9957 -3.3305 26 9 8.6527 -9.5134 -3.3847 27 9 10.1868 -7.8655 -3.7708 28 8 9.0600 -7.6133 -1.2381 29 1 -0.4850 0.8400 -0.0004 30 1 3.8648 -0.3633 0.0014 31 1 5.9234 -1.8571 0.8926 32 1 5.9247 -1.8564 -0.8873 33 1 5.4187 -4.4891 0.0025 34 1 7.1931 -6.0060 0.0049 35 1 9.7142 -5.0973 0.8962 36 1 9.7154 -5.0981 -0.8838 37 1 11.2097 -7.9239 1.0339 38 1 11.5787 -6.4118 0.1468 39 1 11.7594 -7.5285 -1.9121 40 1 12.0246 -8.9832 -0.8949 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001635083427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:50 Heat of formation + Delta-G solvation = -259.667952 kcal Electronic energy + Delta-G solvation = -28997.345151 eV Core-core repulsion = 24011.485483 eV Total energy + Delta-G solvation = -4985.859668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.50687 -48.05863 -47.95696 -40.52557 -39.69608 -38.35528 -35.08674 -34.43013 -33.70853 -32.99803 -31.80553 -31.50696 -28.35983 -26.93580 -24.61893 -23.84110 -22.47008 -21.89985 -20.70764 -19.63262 -19.07075 -18.85044 -18.72921 -18.45019 -17.91638 -17.21433 -16.52746 -16.16339 -15.62642 -15.47894 -14.95235 -14.93738 -14.79857 -14.68790 -14.44601 -14.33684 -14.28253 -14.16424 -14.12154 -14.11099 -13.78498 -13.13642 -13.07091 -12.84791 -12.49157 -12.47423 -12.15280 -12.08312 -12.04859 -11.83002 -11.46597 -11.22083 -10.62865 -10.51531 -10.13804 -10.04515 -9.68230 -9.25100 -8.74999 -8.68066 -8.28822 -6.39306 -3.91829 2.00270 2.65928 2.84022 3.01036 3.05849 3.13800 3.23854 3.33256 3.44835 3.59529 3.81268 3.95976 4.04892 4.07376 4.13995 4.33251 4.39787 4.43203 4.63580 4.75452 4.83529 5.05876 5.15717 5.18949 5.25752 5.31993 5.55460 5.69603 5.81633 5.87449 5.98781 6.40427 6.65324 7.01791 7.46636 8.01911 8.17017 8.46036 8.72565 8.83317 9.31490 9.65355 10.72883 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022147 B = 0.001915 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.998971 B =14619.094195 C =15240.106218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.044 3.956 3 Si 0.880 3.120 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.309 4.309 8 H 0.121 0.879 9 N -0.577 5.577 10 C 0.439 3.561 11 O -0.579 6.579 12 C 0.126 3.874 13 N -0.724 5.724 14 C 0.707 3.293 15 O -0.600 6.600 16 N -0.746 5.746 17 C 0.144 3.856 18 C 0.064 3.936 19 H 0.088 0.912 20 C -0.144 4.144 21 C -0.150 4.150 22 C 0.031 3.969 23 H 0.117 0.883 24 C 0.463 3.537 25 F -0.177 7.177 26 F -0.175 7.175 27 F -0.172 7.172 28 O -0.345 6.345 29 H 0.275 0.725 30 H 0.374 0.626 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.408 0.592 34 H 0.401 0.599 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.214 -17.957 -0.419 31.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.160 4.160 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.215 5.215 10 C 0.225 3.775 11 O -0.463 6.463 12 C -0.002 4.002 13 N -0.382 5.382 14 C 0.406 3.594 15 O -0.479 6.479 16 N -0.403 5.403 17 C 0.019 3.981 18 C 0.007 3.993 19 H 0.106 0.894 20 C -0.182 4.182 21 C -0.187 4.187 22 C -0.029 4.029 23 H 0.135 0.865 24 C 0.408 3.592 25 F -0.158 7.158 26 F -0.156 7.156 27 F -0.154 7.154 28 O -0.264 6.264 29 H 0.086 0.914 30 H 0.208 0.792 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.246 0.754 34 H 0.235 0.765 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 26.104 -17.581 -0.579 31.477 hybrid contribution 0.011 0.561 -0.179 0.589 sum 26.115 -17.019 -0.757 31.180 Atomic orbital electron populations 1.69621 1.05707 1.27789 1.48272 1.25071 0.95544 0.98182 0.97173 0.86664 0.79906 0.83740 0.79146 1.19392 1.20012 1.19200 1.19440 0.78966 0.96786 1.48607 0.86094 1.42116 1.07685 1.06136 1.65526 1.19669 0.88114 0.84862 0.84888 1.90539 1.69266 1.30924 1.55596 1.20803 0.93312 0.82889 1.03231 1.44738 1.05212 1.09334 1.78880 1.15798 0.82597 0.83072 0.77898 1.90901 1.55205 1.43179 1.58646 1.44917 1.07584 1.06543 1.81227 1.21367 0.81361 0.92018 1.03359 1.23206 0.95127 0.94318 0.86671 0.89379 1.22916 0.94885 1.02015 0.98360 1.23211 0.95060 1.01176 0.99268 1.24283 0.93197 0.95031 0.90367 0.86534 1.20155 0.73890 0.74650 0.90461 1.93205 1.63862 1.64247 1.94527 1.93235 1.40621 1.88138 1.93614 1.93223 1.93524 1.48721 1.79899 1.89047 1.51194 1.45654 1.40512 0.91407 0.79228 0.89883 0.89867 0.75405 0.76526 0.89872 0.90620 0.89194 0.88742 0.88856 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.10 13.96 55.50 0.77 -24.32 16 2 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 3 Si 0.88 19.12 27.74 -169.99 -4.72 14.40 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.30 6.52 56.52 0.37 -4.94 16 7 C -0.31 -8.58 10.16 -14.93 -0.15 -8.73 16 8 H 0.12 3.81 7.39 -52.49 -0.39 3.43 16 9 N -0.58 -13.52 5.09 -10.96 -0.06 -13.58 16 10 C 0.44 9.74 7.85 -10.98 -0.09 9.65 16 11 O -0.58 -14.73 15.24 5.54 0.08 -14.65 16 12 C 0.13 2.23 6.15 -5.19 -0.03 2.20 16 13 N -0.72 -11.81 5.53 -66.41 -0.37 -12.18 16 14 C 0.71 11.05 8.57 -86.92 -0.74 10.31 16 15 O -0.60 -11.21 16.34 5.29 0.09 -11.12 16 16 N -0.75 -8.55 5.54 -65.23 -0.36 -8.91 16 17 C 0.14 1.29 5.13 -4.04 -0.02 1.27 16 18 C 0.06 0.39 3.46 -26.16 -0.09 0.30 16 19 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 20 C -0.14 -0.51 6.64 -25.20 -0.17 -0.68 16 21 C -0.15 -0.59 6.34 -24.72 -0.16 -0.75 16 22 C 0.03 0.18 3.32 -25.68 -0.09 0.10 16 23 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 24 C 0.46 3.73 2.93 37.16 0.11 3.84 16 25 F -0.18 -1.30 17.08 2.25 0.04 -1.26 16 26 F -0.17 -1.73 17.32 2.25 0.04 -1.69 16 27 F -0.17 -1.71 16.58 2.25 0.04 -1.67 16 28 O -0.34 -2.88 10.76 -35.23 -0.38 -3.26 16 29 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.37 7.75 5.76 -40.82 -0.24 7.51 16 31 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.41 6.54 7.45 -40.82 -0.30 6.24 16 34 H 0.40 3.92 8.49 -40.82 -0.35 3.57 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.09 0.31 7.70 -51.93 -0.40 -0.09 16 39 H 0.09 0.44 7.55 -51.93 -0.39 0.05 16 40 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 355.73 15.07 5.36 5.36 Total: -1.00 -34.79 355.73 -5.60 -40.39 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -4.62 Total: 13.87 kcal Atomic # 6 Polarization: 20.13 SS G_CDS: -1.52 Total: 18.61 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.01 Total: -58.99 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.21 Total: -29.03 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.11 Total: -4.62 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.72 Total: 14.40 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.79 -5.60 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635083427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -219.279 kcal (2) G-P(sol) polarization free energy of solvation -34.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds