Wall clock time and date at job start Tue Mar 31 2020 22:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86799 * 119.99870 * 2 1 4 4 H 1.48500 * 109.46831 * 269.99315 * 3 2 1 5 5 H 1.48499 * 109.47355 * 29.99478 * 3 2 1 6 6 H 1.48500 * 109.46919 * 150.00007 * 3 2 1 7 7 C 1.38950 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00379 * 0.02562 * 7 2 1 9 9 N 1.37104 * 119.99462 * 180.02562 * 7 2 1 10 10 C 1.34779 * 119.99723 * 180.02562 * 9 7 2 11 11 O 1.21299 * 120.00006 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99917 * 180.02562 * 10 9 7 13 13 N 1.46502 * 109.47130 * 179.97438 * 12 10 9 14 14 C 1.34776 * 120.00249 * 180.02562 * 13 12 10 15 15 O 1.21589 * 119.99883 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00366 * 179.97438 * 14 13 12 17 17 C 1.46499 * 120.00160 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47012 * 179.97438 * 17 16 14 19 19 H 1.08998 * 109.87222 * 306.00691 * 18 17 16 20 20 C 1.54096 * 109.87660 * 184.99649 * 18 17 16 21 21 C 1.54817 * 104.18822 * 238.54762 * 20 18 17 22 22 C 1.54991 * 102.09285 * 339.11830 * 21 20 18 23 23 H 1.08998 * 110.62229 * 278.52472 * 22 21 20 24 24 C 1.52998 * 110.61844 * 155.52077 * 22 21 20 25 25 F 1.39905 * 109.46941 * 60.00571 * 24 22 21 26 26 F 1.39899 * 109.47175 * 180.02562 * 24 22 21 27 27 F 1.39896 * 109.47462 * 300.00332 * 24 22 21 28 28 O 1.43749 * 109.87535 * 67.16618 * 18 17 16 29 29 H 0.96999 * 119.99999 * 0.02562 * 1 2 3 30 30 H 0.96992 * 120.00109 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47466 * 59.99477 * 12 10 9 32 32 H 1.09005 * 109.46867 * 299.99480 * 12 10 9 33 33 H 0.97004 * 120.00128 * 359.97438 * 13 12 10 34 34 H 0.96999 * 119.99628 * 359.97438 * 16 14 13 35 35 H 1.08999 * 109.47076 * 59.99677 * 17 16 14 36 36 H 1.09000 * 109.46632 * 299.99794 * 17 16 14 37 37 H 1.09004 * 110.48850 * 119.87028 * 20 18 17 38 38 H 1.08996 * 110.48992 * 357.22609 * 20 18 17 39 39 H 1.08996 * 110.90849 * 97.31959 * 21 20 18 40 40 H 1.09004 * 110.90250 * 220.92384 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2033 0.0011 10 6 4.0538 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0011 12 6 5.5607 -2.3706 0.0022 13 7 6.0491 -3.7518 0.0026 14 6 7.3741 -3.9981 0.0042 15 8 8.1643 -3.0740 0.0048 16 7 7.8234 -5.2688 0.0050 17 6 9.2637 -5.5365 0.0061 18 6 9.5015 -7.0479 0.0076 19 1 8.9633 -7.5068 0.8369 20 6 11.0090 -7.3409 0.1350 21 6 11.3436 -8.1657 -1.1317 22 6 9.9511 -8.7076 -1.5436 23 1 9.6928 -9.5884 -0.9558 24 6 9.9183 -9.0275 -3.0394 25 9 10.8854 -9.9957 -3.3305 26 9 8.6527 -9.5134 -3.3847 27 9 10.1868 -7.8655 -3.7708 28 8 9.0600 -7.6133 -1.2381 29 1 -0.4850 0.8400 -0.0004 30 1 3.8648 -0.3633 0.0014 31 1 5.9234 -1.8571 0.8926 32 1 5.9247 -1.8564 -0.8873 33 1 5.4187 -4.4891 0.0025 34 1 7.1931 -6.0060 0.0049 35 1 9.7142 -5.0973 0.8962 36 1 9.7154 -5.0981 -0.8838 37 1 11.2097 -7.9239 1.0339 38 1 11.5787 -6.4118 0.1468 39 1 11.7594 -7.5285 -1.9121 40 1 12.0246 -8.9832 -0.8949 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001635083427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:49 Heat of formation + Delta-G solvation = -288.377295 kcal Electronic energy + Delta-G solvation = -28998.590081 eV Core-core repulsion = 24011.485483 eV Total energy + Delta-G solvation = -4987.104598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.15885 -48.69150 -48.66520 -41.34949 -40.71480 -40.04396 -36.34271 -35.92350 -35.27800 -33.83105 -33.39730 -32.18482 -29.60138 -27.94380 -26.16161 -24.72650 -22.95206 -22.41016 -21.84991 -21.46513 -20.57791 -19.71835 -19.55101 -19.35583 -18.83792 -17.85193 -17.41951 -17.35751 -17.01049 -16.66551 -16.63983 -15.76015 -15.73377 -15.60813 -15.56084 -15.39312 -15.09756 -14.90628 -14.84892 -14.80598 -14.69165 -14.57336 -14.31372 -14.10328 -13.98476 -13.45069 -13.31269 -12.95719 -12.82635 -12.53816 -12.44203 -12.33901 -11.99584 -11.76254 -11.57795 -11.42063 -10.98934 -10.65138 -10.43546 -10.31677 -9.81987 -8.45213 -6.07245 1.31581 1.34785 1.44275 1.46895 1.60258 1.79317 2.11998 2.21029 2.27289 2.70370 2.80179 2.92342 3.10999 3.28554 3.36313 3.46513 3.73279 3.78136 3.96578 4.00453 4.06426 4.30483 4.40674 4.44401 4.46314 4.62998 4.83778 4.87051 4.97553 5.09929 5.29632 5.43189 5.49465 5.60159 5.88516 5.93178 6.49285 6.78426 7.00422 7.28834 7.52020 7.78708 8.71217 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022147 B = 0.001915 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.998971 B =14619.094195 C =15240.106218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.009 4.009 3 Si 0.960 3.040 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.232 1.232 7 C -0.331 4.331 8 H 0.063 0.937 9 N -0.578 5.578 10 C 0.446 3.554 11 O -0.615 6.615 12 C 0.138 3.862 13 N -0.728 5.728 14 C 0.705 3.295 15 O -0.630 6.630 16 N -0.733 5.733 17 C 0.139 3.861 18 C 0.067 3.933 19 H 0.107 0.893 20 C -0.136 4.136 21 C -0.146 4.146 22 C 0.031 3.969 23 H 0.144 0.856 24 C 0.456 3.544 25 F -0.173 7.173 26 F -0.190 7.190 27 F -0.188 7.188 28 O -0.375 6.375 29 H 0.281 0.719 30 H 0.392 0.608 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.409 0.591 34 H 0.409 0.591 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.323 -17.624 0.584 34.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.209 4.209 3 Si 0.779 3.221 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.155 1.155 7 C -0.460 4.460 8 H 0.081 0.919 9 N -0.218 5.218 10 C 0.233 3.767 11 O -0.501 6.501 12 C 0.010 3.990 13 N -0.386 5.386 14 C 0.405 3.595 15 O -0.512 6.512 16 N -0.389 5.389 17 C 0.015 3.985 18 C 0.010 3.990 19 H 0.125 0.875 20 C -0.174 4.174 21 C -0.184 4.184 22 C -0.028 4.028 23 H 0.161 0.839 24 C 0.402 3.598 25 F -0.155 7.155 26 F -0.171 7.171 27 F -0.169 7.169 28 O -0.295 6.295 29 H 0.091 0.909 30 H 0.228 0.772 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.247 0.753 34 H 0.245 0.755 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.135 0.865 38 H 0.115 0.885 39 H 0.099 0.901 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 29.249 -17.299 0.426 33.984 hybrid contribution -0.970 0.285 -0.538 1.145 sum 28.279 -17.014 -0.112 33.003 Atomic orbital electron populations 1.69783 1.08028 1.29454 1.49312 1.26085 0.96460 1.02642 0.95732 0.85434 0.79609 0.76967 0.80050 1.18176 1.19781 1.15484 1.19028 0.80964 0.95262 1.50752 0.91884 1.41918 1.06125 1.07427 1.66327 1.20526 0.90084 0.83851 0.82235 1.90526 1.70823 1.32350 1.56381 1.20692 0.89142 0.84204 1.04966 1.44726 1.05693 1.08790 1.79365 1.15910 0.81871 0.84003 0.77717 1.90877 1.55697 1.44436 1.60182 1.44937 1.09024 1.05334 1.79583 1.21588 0.79497 0.94463 1.02949 1.23298 0.97257 0.92028 0.86418 0.87521 1.22946 0.92735 1.02531 0.99185 1.23265 0.94235 1.01824 0.99072 1.24523 0.94103 0.95521 0.88633 0.83883 1.20619 0.73319 0.74182 0.91715 1.93205 1.63570 1.64035 1.94649 1.93201 1.41710 1.88301 1.93895 1.93187 1.93584 1.49638 1.80539 1.89011 1.52238 1.46666 1.41597 0.90925 0.77192 0.87857 0.88179 0.75342 0.75487 0.88936 0.92362 0.86455 0.88491 0.90058 0.85774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.69 13.96 21.66 0.30 -54.39 16 2 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 3 Si 0.96 38.33 27.74 68.60 1.90 40.23 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.23 -7.87 6.52 99.48 0.65 -7.23 16 7 C -0.33 -18.93 10.16 84.04 0.85 -18.07 16 8 H 0.06 4.25 7.39 -2.91 -0.02 4.23 16 9 N -0.58 -26.81 5.09 -306.98 -1.56 -28.37 16 10 C 0.45 19.65 7.85 87.66 0.69 20.33 16 11 O -0.61 -32.01 15.24 -3.09 -0.05 -32.06 16 12 C 0.14 4.64 6.15 85.63 0.53 5.16 16 13 N -0.73 -22.88 5.53 -482.29 -2.67 -25.55 16 14 C 0.71 21.10 8.57 179.05 1.53 22.63 16 15 O -0.63 -22.58 16.34 -4.00 -0.07 -22.65 16 16 N -0.73 -15.79 5.54 -478.54 -2.65 -18.44 16 17 C 0.14 2.27 5.13 86.38 0.44 2.71 16 18 C 0.07 0.65 3.46 30.96 0.11 0.76 16 19 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 20 C -0.14 -0.53 6.64 31.59 0.21 -0.32 16 21 C -0.15 -0.78 6.34 31.90 0.20 -0.58 16 22 C 0.03 0.31 3.32 31.27 0.10 0.41 16 23 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 24 C 0.46 7.04 2.93 71.98 0.21 7.25 16 25 F -0.17 -2.36 17.08 44.97 0.77 -1.60 16 26 F -0.19 -3.72 17.32 44.97 0.78 -2.95 16 27 F -0.19 -3.74 16.58 44.97 0.75 -3.00 16 28 O -0.38 -5.70 10.76 -148.98 -1.60 -7.31 16 29 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 30 H 0.39 15.26 5.76 -92.71 -0.53 14.73 16 31 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 32 H 0.10 3.09 8.14 -2.38 -0.02 3.07 16 33 H 0.41 12.89 7.45 -92.71 -0.69 12.20 16 34 H 0.41 7.45 8.49 -92.71 -0.79 6.67 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 38 H 0.10 0.37 7.70 -2.39 -0.02 0.35 16 39 H 0.08 0.65 7.55 -2.39 -0.02 0.63 16 40 H 0.12 0.05 8.14 -2.38 -0.02 0.03 16 Total: -1.00 -79.54 355.73 0.31 -79.23 By element: Atomic # 1 Polarization: 37.51 SS G_CDS: -0.93 Total: 36.58 kcal Atomic # 6 Polarization: 34.91 SS G_CDS: 5.35 Total: 40.25 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -6.58 Total: -126.74 kcal Atomic # 8 Polarization: -60.30 SS G_CDS: -1.72 Total: -62.01 kcal Atomic # 9 Polarization: -9.83 SS G_CDS: 2.29 Total: -7.54 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 1.90 Total: 40.23 kcal Total: -79.54 0.31 -79.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635083427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -209.149 kcal (2) G-P(sol) polarization free energy of solvation -79.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -288.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -288.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds