Wall clock time and date at job start Tue Mar 31 2020 22:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00070 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00131 * 3 2 1 6 6 H 1.48501 * 109.47296 * 150.00174 * 3 2 1 7 7 C 1.38956 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99687 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00028 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99763 * 180.02562 * 9 7 2 11 11 O 1.21285 * 120.00656 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99773 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47289 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00072 * 179.97438 * 13 12 10 15 15 O 1.21583 * 120.00212 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99868 * 179.97438 * 14 13 12 17 17 C 1.46498 * 120.00109 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47345 * 180.02562 * 17 16 14 19 19 H 1.08997 * 109.87013 * 58.98875 * 18 17 16 20 20 C 1.54095 * 109.88273 * 180.02562 * 18 17 16 21 21 C 1.54809 * 104.19271 * 121.44708 * 20 18 17 22 22 C 1.55000 * 102.08901 * 20.88441 * 21 20 18 23 23 H 1.08996 * 110.61700 * 81.47432 * 22 21 20 24 24 C 1.52999 * 110.61611 * 204.47234 * 22 21 20 25 25 F 1.39899 * 109.47020 * 60.00317 * 24 22 21 26 26 F 1.39903 * 109.46730 * 179.97438 * 24 22 21 27 27 F 1.39890 * 109.47262 * 299.99653 * 24 22 21 28 28 O 1.43744 * 109.87476 * 297.83125 * 18 17 16 29 29 H 0.96997 * 119.99770 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00071 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47438 * 59.99564 * 12 10 9 32 32 H 1.09004 * 109.47113 * 299.99819 * 12 10 9 33 33 H 0.97001 * 119.99251 * 0.02562 * 13 12 10 34 34 H 0.97006 * 119.99964 * 0.02562 * 16 14 13 35 35 H 1.09003 * 109.47061 * 299.99794 * 17 16 14 36 36 H 1.08995 * 109.47328 * 60.00131 * 17 16 14 37 37 H 1.08997 * 110.48912 * 240.13058 * 20 18 17 38 38 H 1.09002 * 110.48668 * 2.63957 * 20 18 17 39 39 H 1.09000 * 110.90550 * 139.07836 * 21 20 18 40 40 H 1.08993 * 110.91007 * 262.68903 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5579 -0.0011 12 6 1.2438 -4.8629 -0.0022 13 7 2.1958 -5.9765 -0.0027 14 6 1.7465 -7.2472 -0.0027 15 8 0.5511 -7.4693 -0.0019 16 7 2.6223 -8.2716 -0.0037 17 6 2.1340 -9.6528 -0.0043 18 6 3.3240 -10.6145 -0.0048 19 1 3.9441 -10.4370 0.8739 20 6 2.8208 -12.0709 -0.0061 21 6 3.4372 -12.6844 -1.2868 22 6 4.6217 -11.7251 -1.5685 23 1 5.4807 -11.9839 -0.9495 24 6 4.9966 -11.7530 -3.0516 25 9 3.8970 -11.3524 -3.8181 26 9 6.0658 -10.8799 -3.2788 27 9 5.3694 -13.0517 -3.4140 28 8 4.1008 -10.4302 -1.2001 29 1 -0.4850 0.8400 0.0004 30 1 0.3534 -2.3906 -0.0016 31 1 0.6174 -4.9205 -0.8924 32 1 0.6168 -4.9209 0.8876 33 1 3.1494 -5.7992 -0.0022 34 1 3.5760 -8.0943 -0.0040 35 1 1.5288 -9.8246 0.8859 36 1 1.5281 -9.8236 -0.8941 37 1 3.1765 -12.5983 0.8790 38 1 1.7321 -12.0984 -0.0534 39 1 3.7932 -13.6976 -1.1003 40 1 2.7213 -12.6701 -2.1085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001635083428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:52 Heat of formation + Delta-G solvation = -266.788925 kcal Electronic energy + Delta-G solvation = -28989.854185 eV Core-core repulsion = 24003.685729 eV Total energy + Delta-G solvation = -4986.168456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.48610 -48.03952 -47.93345 -40.49140 -39.60376 -38.16160 -35.00880 -34.34719 -33.61598 -32.97391 -31.53559 -31.29693 -28.22562 -26.81388 -24.66197 -23.91123 -22.44436 -21.86308 -20.64074 -19.55951 -19.04514 -18.71889 -18.56887 -18.18675 -17.84819 -17.18439 -16.51868 -16.08390 -15.57746 -15.37693 -14.91602 -14.78856 -14.68931 -14.61154 -14.42407 -14.31133 -14.17255 -14.14373 -14.09987 -14.08592 -13.71238 -13.45087 -13.01081 -12.80235 -12.45381 -12.15307 -12.05484 -11.92260 -11.77049 -11.61007 -11.44368 -11.10607 -10.48238 -10.44221 -10.30050 -10.04071 -9.61295 -9.17357 -8.59772 -8.57892 -8.07532 -6.49138 -3.90998 2.02375 2.70265 2.90853 3.13543 3.23705 3.26173 3.29269 3.42094 3.47260 3.78000 3.83830 3.98604 4.09009 4.12149 4.18666 4.40590 4.42667 4.53426 4.77770 4.86349 4.93290 5.08549 5.19600 5.21932 5.29896 5.36079 5.60250 5.94111 6.00791 6.03880 6.11167 6.47615 6.78329 7.10680 7.48306 7.94950 8.25624 8.47921 8.81049 9.07124 9.42189 9.90236 10.67832 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020724 B = 0.001896 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.788358 B =14765.854580 C =15606.525551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.105 0.895 9 N -0.550 5.550 10 C 0.429 3.571 11 O -0.597 6.597 12 C 0.129 3.871 13 N -0.724 5.724 14 C 0.706 3.294 15 O -0.600 6.600 16 N -0.746 5.746 17 C 0.144 3.856 18 C 0.065 3.935 19 H 0.088 0.912 20 C -0.144 4.144 21 C -0.149 4.149 22 C 0.031 3.969 23 H 0.117 0.883 24 C 0.463 3.537 25 F -0.172 7.172 26 F -0.175 7.175 27 F -0.177 7.177 28 O -0.345 6.345 29 H 0.274 0.726 30 H 0.396 0.604 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.407 0.593 34 H 0.400 0.600 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.946 -28.610 -0.662 29.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.185 5.185 10 C 0.215 3.785 11 O -0.484 6.484 12 C 0.000 4.000 13 N -0.381 5.381 14 C 0.405 3.595 15 O -0.479 6.479 16 N -0.403 5.403 17 C 0.019 3.981 18 C 0.007 3.993 19 H 0.106 0.894 20 C -0.182 4.182 21 C -0.187 4.187 22 C -0.029 4.029 23 H 0.134 0.866 24 C 0.408 3.592 25 F -0.153 7.153 26 F -0.156 7.156 27 F -0.159 7.159 28 O -0.264 6.264 29 H 0.084 0.916 30 H 0.230 0.770 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.245 0.755 34 H 0.235 0.765 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.527 -28.394 -0.801 29.145 hybrid contribution 0.739 0.883 -0.207 1.170 sum 7.266 -27.511 -1.007 28.472 Atomic orbital electron populations 1.69616 1.05997 1.28483 1.49426 1.25327 0.95674 0.99923 0.96863 0.85810 0.79205 0.80508 0.78479 1.20278 1.20825 1.19342 1.19724 0.93450 0.82012 1.48183 0.87701 1.41785 1.09492 1.04447 1.62754 1.19772 0.88298 0.85025 0.85434 1.90491 1.13766 1.86865 1.57276 1.20786 0.91215 0.84848 1.03130 1.44760 1.11278 1.03306 1.78744 1.15815 0.85113 0.80589 0.77947 1.90900 1.14056 1.84322 1.58642 1.44896 1.09353 1.04726 1.81327 1.21363 0.94181 0.79227 1.03299 1.23214 0.92756 0.95327 0.88007 0.89411 1.22912 1.03217 0.93870 0.98190 1.23207 0.96322 0.99414 0.99751 1.24272 1.00659 0.87447 0.90471 0.86564 1.20156 0.75182 0.73629 0.90196 1.93226 1.53518 1.90488 1.78105 1.93234 1.57056 1.69648 1.95688 1.93200 1.91692 1.37945 1.93018 1.89029 1.67951 1.25147 1.44285 0.91616 0.77012 0.90017 0.90010 0.75545 0.76549 0.89913 0.90731 0.89237 0.88729 0.88333 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.08 13.05 55.50 0.72 -23.36 16 2 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.71 29.55 -169.99 -5.02 15.68 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 8 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.55 -13.80 5.29 -10.96 -0.06 -13.86 16 10 C 0.43 9.99 7.85 -10.98 -0.09 9.90 16 11 O -0.60 -15.48 15.24 5.55 0.08 -15.39 16 12 C 0.13 2.44 6.15 -5.19 -0.03 2.41 16 13 N -0.72 -12.48 5.53 -66.41 -0.37 -12.85 16 14 C 0.71 11.63 8.57 -86.92 -0.74 10.89 16 15 O -0.60 -11.77 16.34 5.29 0.09 -11.68 16 16 N -0.75 -9.05 5.48 -65.23 -0.36 -9.40 16 17 C 0.14 1.36 5.15 -4.04 -0.02 1.34 16 18 C 0.06 0.41 3.49 -26.16 -0.09 0.32 16 19 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 20 C -0.14 -0.55 6.64 -25.21 -0.17 -0.72 16 21 C -0.15 -0.63 6.34 -24.72 -0.16 -0.79 16 22 C 0.03 0.19 3.32 -25.68 -0.09 0.11 16 23 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 24 C 0.46 3.84 2.93 37.16 0.11 3.95 16 25 F -0.17 -1.76 16.57 2.25 0.04 -1.72 16 26 F -0.17 -1.77 17.32 2.25 0.04 -1.73 16 27 F -0.18 -1.34 17.08 2.25 0.04 -1.30 16 28 O -0.34 -2.97 10.63 -35.23 -0.37 -3.35 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.40 9.55 7.90 -40.82 -0.32 9.23 16 31 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 33 H 0.41 6.87 7.45 -40.82 -0.30 6.56 16 34 H 0.40 4.20 8.43 -40.82 -0.34 3.85 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.09 0.34 7.70 -51.93 -0.40 -0.06 16 39 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.09 0.47 7.55 -51.93 -0.39 0.08 16 LS Contribution 358.67 15.07 5.41 5.41 Total: -1.00 -33.73 358.67 -5.94 -39.67 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -4.66 Total: 14.39 kcal Atomic # 6 Polarization: 21.01 SS G_CDS: -1.52 Total: 19.49 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.06 Total: -59.46 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.20 Total: -30.42 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.11 Total: -4.75 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.73 -5.94 -39.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635083428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -227.121 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds