Wall clock time and date at job start Tue Mar 31 2020 22:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00070 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00131 * 3 2 1 6 6 H 1.48501 * 109.47296 * 150.00174 * 3 2 1 7 7 C 1.38956 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99687 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00028 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99763 * 180.02562 * 9 7 2 11 11 O 1.21285 * 120.00656 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99773 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47289 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00072 * 179.97438 * 13 12 10 15 15 O 1.21583 * 120.00212 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99868 * 179.97438 * 14 13 12 17 17 C 1.46498 * 120.00109 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47345 * 180.02562 * 17 16 14 19 19 H 1.08997 * 109.87013 * 58.98875 * 18 17 16 20 20 C 1.54095 * 109.88273 * 180.02562 * 18 17 16 21 21 C 1.54809 * 104.19271 * 121.44708 * 20 18 17 22 22 C 1.55000 * 102.08901 * 20.88441 * 21 20 18 23 23 H 1.08996 * 110.61700 * 81.47432 * 22 21 20 24 24 C 1.52999 * 110.61611 * 204.47234 * 22 21 20 25 25 F 1.39899 * 109.47020 * 60.00317 * 24 22 21 26 26 F 1.39903 * 109.46730 * 179.97438 * 24 22 21 27 27 F 1.39890 * 109.47262 * 299.99653 * 24 22 21 28 28 O 1.43744 * 109.87476 * 297.83125 * 18 17 16 29 29 H 0.96997 * 119.99770 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00071 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47438 * 59.99564 * 12 10 9 32 32 H 1.09004 * 109.47113 * 299.99819 * 12 10 9 33 33 H 0.97001 * 119.99251 * 0.02562 * 13 12 10 34 34 H 0.97006 * 119.99964 * 0.02562 * 16 14 13 35 35 H 1.09003 * 109.47061 * 299.99794 * 17 16 14 36 36 H 1.08995 * 109.47328 * 60.00131 * 17 16 14 37 37 H 1.08997 * 110.48912 * 240.13058 * 20 18 17 38 38 H 1.09002 * 110.48668 * 2.63957 * 20 18 17 39 39 H 1.09000 * 110.90550 * 139.07836 * 21 20 18 40 40 H 1.08993 * 110.91007 * 262.68903 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5579 -0.0011 12 6 1.2438 -4.8629 -0.0022 13 7 2.1958 -5.9765 -0.0027 14 6 1.7465 -7.2472 -0.0027 15 8 0.5511 -7.4693 -0.0019 16 7 2.6223 -8.2716 -0.0037 17 6 2.1340 -9.6528 -0.0043 18 6 3.3240 -10.6145 -0.0048 19 1 3.9441 -10.4370 0.8739 20 6 2.8208 -12.0709 -0.0061 21 6 3.4372 -12.6844 -1.2868 22 6 4.6217 -11.7251 -1.5685 23 1 5.4807 -11.9839 -0.9495 24 6 4.9966 -11.7530 -3.0516 25 9 3.8970 -11.3524 -3.8181 26 9 6.0658 -10.8799 -3.2788 27 9 5.3694 -13.0517 -3.4140 28 8 4.1008 -10.4302 -1.2001 29 1 -0.4850 0.8400 0.0004 30 1 0.3534 -2.3906 -0.0016 31 1 0.6174 -4.9205 -0.8924 32 1 0.6168 -4.9209 0.8876 33 1 3.1494 -5.7992 -0.0022 34 1 3.5760 -8.0943 -0.0040 35 1 1.5288 -9.8246 0.8859 36 1 1.5281 -9.8236 -0.8941 37 1 3.1765 -12.5983 0.8790 38 1 1.7321 -12.0984 -0.0534 39 1 3.7932 -13.6976 -1.1003 40 1 2.7213 -12.6701 -2.1085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001635083428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:52 Heat of formation + Delta-G solvation = -293.428017 kcal Electronic energy + Delta-G solvation = -28991.009343 eV Core-core repulsion = 24003.685729 eV Total energy + Delta-G solvation = -4987.323614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.15765 -48.69071 -48.66304 -41.33655 -40.68006 -39.93959 -36.30446 -35.90585 -35.25537 -33.41206 -33.36232 -32.17106 -29.48126 -27.90654 -26.31506 -24.75090 -22.95322 -22.40876 -21.86360 -21.36008 -20.11287 -19.71814 -19.58121 -19.35774 -18.83799 -17.83022 -17.41733 -17.35243 -16.98768 -16.62414 -16.46210 -15.93902 -15.69512 -15.60773 -15.55208 -15.39246 -15.10707 -15.09529 -14.84801 -14.80405 -14.69003 -14.56794 -14.06369 -13.94245 -13.54022 -13.43176 -13.30192 -12.90299 -12.82458 -12.53941 -12.45288 -12.33453 -12.12217 -11.76705 -11.56759 -11.42475 -10.98479 -10.55343 -10.43547 -10.09925 -9.81372 -8.50569 -6.00740 1.36836 1.42603 1.46470 1.54668 1.63048 1.90298 2.12138 2.26522 2.30286 2.70714 2.92518 3.05399 3.16591 3.31132 3.36634 3.47306 3.72545 3.78714 3.96810 4.06614 4.21806 4.29315 4.43320 4.45696 4.47583 4.63412 4.84282 4.86845 4.97459 5.10102 5.31517 5.38999 5.42399 5.60969 5.91110 5.95172 6.48709 7.01818 7.03936 7.43073 7.53229 7.95127 8.66398 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020724 B = 0.001896 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.788358 B =14765.854580 C =15606.525551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.012 4.012 3 Si 0.998 3.002 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.560 5.560 10 C 0.434 3.566 11 O -0.624 6.624 12 C 0.142 3.858 13 N -0.725 5.725 14 C 0.704 3.296 15 O -0.632 6.632 16 N -0.731 5.731 17 C 0.138 3.862 18 C 0.068 3.932 19 H 0.108 0.892 20 C -0.136 4.136 21 C -0.146 4.146 22 C 0.032 3.968 23 H 0.145 0.855 24 C 0.456 3.544 25 F -0.188 7.188 26 F -0.189 7.189 27 F -0.173 7.173 28 O -0.375 6.375 29 H 0.280 0.720 30 H 0.399 0.601 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.409 0.591 34 H 0.410 0.590 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.118 0.882 38 H 0.095 0.905 39 H 0.125 0.875 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.503 -29.876 0.245 30.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.221 3.779 11 O -0.512 6.512 12 C 0.013 3.987 13 N -0.383 5.383 14 C 0.404 3.596 15 O -0.514 6.514 16 N -0.387 5.387 17 C 0.014 3.986 18 C 0.011 3.989 19 H 0.126 0.874 20 C -0.174 4.174 21 C -0.184 4.184 22 C -0.027 4.027 23 H 0.162 0.838 24 C 0.402 3.598 25 F -0.170 7.170 26 F -0.171 7.171 27 F -0.154 7.154 28 O -0.295 6.295 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.247 0.753 34 H 0.246 0.754 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.136 0.864 38 H 0.114 0.886 39 H 0.143 0.857 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.098 -29.707 0.105 30.544 hybrid contribution 0.582 1.185 -0.532 1.423 sum 7.680 -28.523 -0.427 29.542 Atomic orbital electron populations 1.69682 1.06995 1.29630 1.49297 1.26144 0.96564 1.02706 0.95817 0.84858 0.77914 0.76457 0.78687 1.19621 1.19592 1.19428 1.19733 0.92953 0.83542 1.50385 0.89601 1.41833 1.09607 1.04582 1.63485 1.20426 0.88114 0.85925 0.83477 1.90467 1.15211 1.87559 1.57991 1.20584 0.90987 0.83053 1.04040 1.44701 1.10991 1.03361 1.79233 1.15946 0.85137 0.80813 0.77746 1.90875 1.15588 1.84737 1.60240 1.44897 1.09336 1.04914 1.79587 1.21606 0.95828 0.78233 1.02889 1.23300 0.91710 0.95924 0.87969 0.87416 1.22943 1.03354 0.92051 0.99075 1.23262 0.95282 1.00333 0.99510 1.24519 1.02369 0.87031 0.88810 0.83781 1.20620 0.74390 0.73403 0.91429 1.93189 1.54301 1.90709 1.78801 1.93201 1.57740 1.70240 1.95893 1.93201 1.91611 1.37483 1.93149 1.88993 1.68457 1.26795 1.45252 0.91064 0.76669 0.89246 0.88828 0.75302 0.75448 0.89066 0.92418 0.86387 0.88603 0.85715 0.90153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.05 13.05 21.66 0.28 -48.76 16 2 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 3 Si 1.00 42.10 29.55 68.60 2.03 44.13 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.34 -18.74 9.68 84.04 0.81 -17.93 16 8 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 9 N -0.56 -28.48 5.29 -306.99 -1.62 -30.10 16 10 C 0.43 20.36 7.85 87.66 0.69 21.05 16 11 O -0.62 -32.73 15.24 -3.05 -0.05 -32.77 16 12 C 0.14 5.35 6.15 85.63 0.53 5.88 16 13 N -0.73 -24.72 5.53 -482.28 -2.67 -27.39 16 14 C 0.70 22.80 8.57 179.06 1.53 24.34 16 15 O -0.63 -24.58 16.34 -3.98 -0.07 -24.64 16 16 N -0.73 -17.02 5.48 -478.55 -2.62 -19.64 16 17 C 0.14 2.44 5.15 86.38 0.44 2.89 16 18 C 0.07 0.71 3.49 30.96 0.11 0.82 16 19 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 20 C -0.14 -0.63 6.64 31.58 0.21 -0.42 16 21 C -0.15 -0.87 6.34 31.90 0.20 -0.67 16 22 C 0.03 0.33 3.32 31.28 0.10 0.43 16 23 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 24 C 0.46 7.25 2.93 71.98 0.21 7.47 16 25 F -0.19 -3.89 16.57 44.97 0.75 -3.15 16 26 F -0.19 -3.78 17.32 44.97 0.78 -3.00 16 27 F -0.17 -2.43 17.08 44.97 0.77 -1.66 16 28 O -0.38 -5.91 10.63 -148.98 -1.58 -7.49 16 29 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 30 H 0.40 19.51 7.90 -92.71 -0.73 18.78 16 31 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 32 H 0.09 3.34 8.14 -2.38 -0.02 3.32 16 33 H 0.41 13.69 7.45 -92.71 -0.69 12.99 16 34 H 0.41 8.10 8.43 -92.70 -0.78 7.32 16 35 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 38 H 0.10 0.46 7.70 -2.39 -0.02 0.44 16 39 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 40 H 0.08 0.71 7.55 -2.39 -0.02 0.69 16 Total: -1.00 -73.14 358.67 0.23 -72.91 By element: Atomic # 1 Polarization: 38.94 SS G_CDS: -1.07 Total: 37.87 kcal Atomic # 6 Polarization: 38.40 SS G_CDS: 5.31 Total: 43.71 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -6.63 Total: -125.90 kcal Atomic # 8 Polarization: -63.21 SS G_CDS: -1.70 Total: -64.91 kcal Atomic # 9 Polarization: -10.11 SS G_CDS: 2.29 Total: -7.81 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -73.14 0.23 -72.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635083428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -220.521 kcal (2) G-P(sol) polarization free energy of solvation -73.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -293.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -293.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds