Wall clock time and date at job start Tue Mar 31 2020 22:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99666 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00359 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00109 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99820 * 3 2 1 7 7 C 1.38951 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00337 * 0.02562 * 7 2 1 9 9 N 1.37095 * 119.99671 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99970 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99980 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99766 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.46949 * 179.97438 * 12 10 9 14 14 C 1.34779 * 120.00169 * 180.02562 * 13 12 10 15 15 O 1.21581 * 119.99875 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00115 * 180.02562 * 14 13 12 17 17 C 1.46499 * 120.00303 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.47549 * 179.97438 * 17 16 14 19 19 H 1.09002 * 109.87029 * 306.00621 * 18 17 16 20 20 C 1.54093 * 109.88347 * 184.99351 * 18 17 16 21 21 C 1.54806 * 104.19317 * 242.60953 * 20 18 17 22 22 C 1.54996 * 102.09121 * 20.87434 * 21 20 18 23 23 H 1.09002 * 110.61667 * 81.48319 * 22 21 20 24 24 C 1.52997 * 110.61700 * 204.31807 * 22 21 20 25 25 F 1.39898 * 109.47071 * 60.00608 * 24 22 21 26 26 F 1.39902 * 109.47233 * 180.02562 * 24 22 21 27 27 F 1.39898 * 109.47603 * 300.00623 * 24 22 21 28 28 O 1.43754 * 109.87754 * 67.16297 * 18 17 16 29 29 H 0.96996 * 120.00340 * 359.97438 * 1 2 3 30 30 H 0.97004 * 120.00502 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47240 * 299.99252 * 12 10 9 32 32 H 1.09000 * 109.47318 * 60.00368 * 12 10 9 33 33 H 0.97010 * 119.99910 * 359.97438 * 13 12 10 34 34 H 0.97010 * 119.99964 * 359.97438 * 16 14 13 35 35 H 1.09005 * 109.46517 * 299.99660 * 17 16 14 36 36 H 1.08992 * 109.46987 * 59.98856 * 17 16 14 37 37 H 1.09004 * 110.48519 * 1.28495 * 20 18 17 38 38 H 1.09001 * 110.48809 * 123.79499 * 20 18 17 39 39 H 1.08995 * 110.91073 * 139.07885 * 21 20 18 40 40 H 1.09009 * 110.90119 * 262.68183 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 1.4000 5 1 3.5456 1.4401 -0.7001 6 1 1.4455 2.6527 -0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3798 -1.2033 0.0011 10 6 4.0537 -2.3705 0.0011 11 8 3.4473 -3.4210 0.0011 12 6 5.5608 -2.3704 0.0011 13 7 6.0491 -3.7516 0.0017 14 6 7.3742 -3.9979 0.0023 15 8 8.1643 -3.0738 0.0019 16 7 7.8235 -5.2686 0.0024 17 6 9.2638 -5.5363 0.0036 18 6 9.5017 -7.0477 0.0040 19 1 8.9633 -7.5072 0.8329 20 6 11.0091 -7.3409 0.1315 21 6 11.3660 -8.0731 -1.1850 22 6 10.2064 -7.6440 -2.1197 23 1 10.3967 -6.6558 -2.5385 24 6 10.0062 -8.6710 -3.2360 25 9 9.6992 -9.9154 -2.6753 26 9 8.9562 -8.2606 -4.0644 27 9 11.1804 -8.7759 -3.9893 28 8 9.0604 -7.6123 -1.2422 29 1 -0.4850 0.8400 0.0004 30 1 3.8649 -0.3633 0.0007 31 1 5.9241 -1.8567 -0.8889 32 1 5.9241 -1.8567 0.8911 33 1 5.4187 -4.4890 0.0024 34 1 7.1931 -6.0060 0.0023 35 1 9.7157 -5.0973 -0.8859 36 1 9.7141 -5.0977 0.8940 37 1 11.5727 -6.4117 0.2161 38 1 11.2016 -7.9824 0.9915 39 1 12.3253 -7.7307 -1.5728 40 1 11.3696 -9.1535 -1.0404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001635083429.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:55 Heat of formation + Delta-G solvation = -260.119487 kcal Electronic energy + Delta-G solvation = -29075.912717 eV Core-core repulsion = 24090.033469 eV Total energy + Delta-G solvation = -4985.879248 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.50524 -48.05132 -47.96013 -40.62310 -39.69956 -38.36289 -35.00410 -34.44233 -33.72487 -32.99504 -31.80912 -31.46133 -28.43609 -26.95872 -24.72617 -23.98121 -22.31733 -21.77416 -20.71589 -19.64373 -19.13578 -18.86349 -18.71343 -18.51291 -18.11978 -16.95269 -16.46677 -16.11303 -15.65694 -15.47002 -15.02317 -14.94335 -14.80324 -14.73836 -14.57267 -14.40820 -14.24291 -14.14776 -14.12097 -14.07664 -13.77221 -13.14613 -13.11698 -12.80892 -12.53014 -12.47823 -12.16103 -12.08203 -12.02967 -11.87063 -11.49028 -11.23059 -10.63707 -10.49533 -10.16402 -10.05333 -9.69176 -9.28316 -8.76096 -8.70491 -8.29746 -6.40060 -3.92641 2.01528 2.62268 2.89332 3.00261 3.04856 3.13020 3.25099 3.30255 3.46159 3.58360 3.85739 3.94877 4.04160 4.05495 4.16697 4.28965 4.35451 4.51074 4.63210 4.76384 4.81611 5.04970 5.14789 5.16042 5.19004 5.34192 5.53881 5.67620 5.79735 5.85670 5.96475 6.38435 6.63139 6.99578 7.45703 8.00986 8.14772 8.45078 8.69979 8.82495 9.30580 9.64369 10.72128 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021780 B = 0.001940 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.286505 B =14430.284768 C =14988.640057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.267 1.267 6 H -0.275 1.275 7 C -0.310 4.310 8 H 0.121 0.879 9 N -0.577 5.577 10 C 0.438 3.562 11 O -0.579 6.579 12 C 0.126 3.874 13 N -0.724 5.724 14 C 0.706 3.294 15 O -0.601 6.601 16 N -0.745 5.745 17 C 0.123 3.877 18 C 0.064 3.936 19 H 0.115 0.885 20 C -0.142 4.142 21 C -0.148 4.148 22 C 0.028 3.972 23 H 0.117 0.883 24 C 0.464 3.536 25 F -0.174 7.174 26 F -0.174 7.174 27 F -0.176 7.176 28 O -0.342 6.342 29 H 0.275 0.725 30 H 0.374 0.626 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.409 0.591 34 H 0.401 0.599 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.706 -15.878 -1.563 31.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.160 4.160 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.192 1.192 6 H -0.200 1.200 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.214 5.214 10 C 0.224 3.776 11 O -0.463 6.463 12 C -0.002 4.002 13 N -0.381 5.381 14 C 0.406 3.594 15 O -0.480 6.480 16 N -0.401 5.401 17 C -0.002 4.002 18 C 0.006 3.994 19 H 0.132 0.868 20 C -0.180 4.180 21 C -0.186 4.186 22 C -0.031 4.031 23 H 0.135 0.865 24 C 0.410 3.590 25 F -0.156 7.156 26 F -0.155 7.155 27 F -0.158 7.158 28 O -0.261 6.261 29 H 0.086 0.914 30 H 0.208 0.792 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.246 0.754 34 H 0.235 0.765 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 26.552 -15.672 -1.637 30.876 hybrid contribution 0.024 0.683 -0.228 0.720 sum 26.576 -14.989 -1.865 30.569 Atomic orbital electron populations 1.69618 1.05710 1.27803 1.48233 1.25071 0.95541 0.98180 0.97166 0.86664 0.79925 0.83749 0.79120 1.19404 1.19197 1.20002 1.19440 0.78961 0.96792 1.48624 0.86090 1.42116 1.07688 1.06132 1.65509 1.19663 0.88103 0.84870 0.84933 1.90539 1.69251 1.30918 1.55589 1.20804 0.93345 0.82870 1.03211 1.44746 1.05213 1.09357 1.78823 1.15809 0.82605 0.83082 0.77909 1.90897 1.55223 1.43195 1.58692 1.44896 1.07522 1.06538 1.81187 1.21695 0.81464 0.93949 1.03101 1.23226 0.95874 0.93224 0.87041 0.86773 1.22896 0.94486 1.02259 0.98375 1.23207 0.98076 1.02880 0.94447 1.24307 0.89127 0.98238 0.91474 0.86542 1.20133 0.74079 0.81804 0.83021 1.93203 1.92948 1.44619 1.84815 1.93246 1.58157 1.90058 1.74028 1.93206 1.48286 1.96331 1.77945 1.89036 1.29883 1.83447 1.23760 0.91396 0.79234 0.89896 0.89879 0.75371 0.76456 0.91286 0.90170 0.89083 0.88841 0.88261 0.88933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.03 13.96 55.50 0.77 -24.26 16 2 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 3 Si 0.88 19.03 27.74 -169.99 -4.71 14.31 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.27 -5.28 6.52 56.52 0.37 -4.92 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 7 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 8 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 9 N -0.58 -13.45 5.09 -10.96 -0.06 -13.50 16 10 C 0.44 9.67 7.85 -10.98 -0.09 9.58 16 11 O -0.58 -14.66 15.24 5.55 0.08 -14.58 16 12 C 0.13 2.21 6.15 -5.19 -0.03 2.18 16 13 N -0.72 -11.63 5.53 -66.41 -0.37 -12.00 16 14 C 0.71 10.80 8.57 -86.92 -0.74 10.06 16 15 O -0.60 -10.99 16.34 5.29 0.09 -10.91 16 16 N -0.74 -8.25 5.54 -65.23 -0.36 -8.61 16 17 C 0.12 1.03 5.08 -4.05 -0.02 1.01 16 18 C 0.06 0.38 3.49 -26.16 -0.09 0.29 16 19 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 20 C -0.14 -0.49 6.64 -25.21 -0.17 -0.66 16 21 C -0.15 -0.59 6.34 -24.73 -0.16 -0.74 16 22 C 0.03 0.18 3.22 -25.68 -0.08 0.10 16 23 H 0.12 0.65 8.03 -51.93 -0.42 0.23 16 24 C 0.46 3.81 2.93 37.16 0.11 3.92 16 25 F -0.17 -1.59 16.58 2.25 0.04 -1.55 16 26 F -0.17 -1.81 17.32 2.25 0.04 -1.77 16 27 F -0.18 -1.35 17.08 2.25 0.04 -1.32 16 28 O -0.34 -2.83 10.77 -35.23 -0.38 -3.21 16 29 H 0.28 7.26 8.31 -40.82 -0.34 6.93 16 30 H 0.37 7.70 5.76 -40.82 -0.24 7.46 16 31 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.41 6.48 7.45 -40.82 -0.30 6.17 16 34 H 0.40 3.83 8.49 -40.82 -0.35 3.49 16 35 H 0.07 0.63 7.99 -51.93 -0.41 0.21 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.24 7.70 -51.93 -0.40 -0.16 16 38 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 39 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.09 0.37 7.55 -51.92 -0.39 -0.02 16 LS Contribution 355.39 15.07 5.36 5.36 Total: -1.00 -34.51 355.39 -5.58 -40.09 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -4.60 Total: 13.81 kcal Atomic # 6 Polarization: 19.65 SS G_CDS: -1.52 Total: 18.12 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.01 Total: -58.37 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.21 Total: -28.69 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.11 Total: -4.64 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.31 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.51 -5.58 -40.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635083429.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -220.027 kcal (2) G-P(sol) polarization free energy of solvation -34.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -260.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds