Wall clock time and date at job start Tue Mar 31 2020 22:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99666 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00359 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00109 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99820 * 3 2 1 7 7 C 1.38951 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00337 * 0.02562 * 7 2 1 9 9 N 1.37095 * 119.99671 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99970 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99980 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99766 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.46949 * 179.97438 * 12 10 9 14 14 C 1.34779 * 120.00169 * 180.02562 * 13 12 10 15 15 O 1.21581 * 119.99875 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00115 * 180.02562 * 14 13 12 17 17 C 1.46499 * 120.00303 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.47549 * 179.97438 * 17 16 14 19 19 H 1.09002 * 109.87029 * 306.00621 * 18 17 16 20 20 C 1.54093 * 109.88347 * 184.99351 * 18 17 16 21 21 C 1.54806 * 104.19317 * 242.60953 * 20 18 17 22 22 C 1.54996 * 102.09121 * 20.87434 * 21 20 18 23 23 H 1.09002 * 110.61667 * 81.48319 * 22 21 20 24 24 C 1.52997 * 110.61700 * 204.31807 * 22 21 20 25 25 F 1.39898 * 109.47071 * 60.00608 * 24 22 21 26 26 F 1.39902 * 109.47233 * 180.02562 * 24 22 21 27 27 F 1.39898 * 109.47603 * 300.00623 * 24 22 21 28 28 O 1.43754 * 109.87754 * 67.16297 * 18 17 16 29 29 H 0.96996 * 120.00340 * 359.97438 * 1 2 3 30 30 H 0.97004 * 120.00502 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47240 * 299.99252 * 12 10 9 32 32 H 1.09000 * 109.47318 * 60.00368 * 12 10 9 33 33 H 0.97010 * 119.99910 * 359.97438 * 13 12 10 34 34 H 0.97010 * 119.99964 * 359.97438 * 16 14 13 35 35 H 1.09005 * 109.46517 * 299.99660 * 17 16 14 36 36 H 1.08992 * 109.46987 * 59.98856 * 17 16 14 37 37 H 1.09004 * 110.48519 * 1.28495 * 20 18 17 38 38 H 1.09001 * 110.48809 * 123.79499 * 20 18 17 39 39 H 1.08995 * 110.91073 * 139.07885 * 21 20 18 40 40 H 1.09009 * 110.90119 * 262.68183 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 1.4000 5 1 3.5456 1.4401 -0.7001 6 1 1.4455 2.6527 -0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3798 -1.2033 0.0011 10 6 4.0537 -2.3705 0.0011 11 8 3.4473 -3.4210 0.0011 12 6 5.5608 -2.3704 0.0011 13 7 6.0491 -3.7516 0.0017 14 6 7.3742 -3.9979 0.0023 15 8 8.1643 -3.0738 0.0019 16 7 7.8235 -5.2686 0.0024 17 6 9.2638 -5.5363 0.0036 18 6 9.5017 -7.0477 0.0040 19 1 8.9633 -7.5072 0.8329 20 6 11.0091 -7.3409 0.1315 21 6 11.3660 -8.0731 -1.1850 22 6 10.2064 -7.6440 -2.1197 23 1 10.3967 -6.6558 -2.5385 24 6 10.0062 -8.6710 -3.2360 25 9 9.6992 -9.9154 -2.6753 26 9 8.9562 -8.2606 -4.0644 27 9 11.1804 -8.7759 -3.9893 28 8 9.0604 -7.6123 -1.2422 29 1 -0.4850 0.8400 0.0004 30 1 3.8649 -0.3633 0.0007 31 1 5.9241 -1.8567 -0.8889 32 1 5.9241 -1.8567 0.8911 33 1 5.4187 -4.4890 0.0024 34 1 7.1931 -6.0060 0.0023 35 1 9.7157 -5.0973 -0.8859 36 1 9.7141 -5.0977 0.8940 37 1 11.5727 -6.4117 0.2161 38 1 11.2016 -7.9824 0.9915 39 1 12.3253 -7.7307 -1.5728 40 1 11.3696 -9.1535 -1.0404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001635083429.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:55 Heat of formation + Delta-G solvation = -288.440428 kcal Electronic energy + Delta-G solvation = -29077.140805 eV Core-core repulsion = 24090.033469 eV Total energy + Delta-G solvation = -4987.107336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.17092 -48.70576 -48.66810 -41.39604 -40.76056 -40.03283 -36.32625 -35.83098 -35.27329 -33.83039 -33.40150 -32.11763 -29.64370 -27.98274 -26.16430 -24.95873 -22.79828 -22.31113 -21.82154 -21.46181 -20.57553 -19.76193 -19.55895 -19.31048 -19.10245 -17.64687 -17.47806 -17.38507 -16.92834 -16.69832 -16.45178 -15.80620 -15.77629 -15.63463 -15.56280 -15.41824 -15.11192 -14.96620 -14.88507 -14.81922 -14.78855 -14.51085 -14.31018 -14.02201 -13.96143 -13.52720 -13.24868 -12.94969 -12.86946 -12.49527 -12.44253 -12.37443 -11.99730 -11.76641 -11.57539 -11.42334 -11.01576 -10.65014 -10.42925 -10.31594 -9.81392 -8.45124 -6.07235 1.31860 1.34684 1.44129 1.45238 1.61004 1.79519 2.12567 2.21159 2.29470 2.69470 2.80794 2.91133 3.11124 3.27863 3.43633 3.46885 3.60794 3.75611 3.91559 4.00626 4.12868 4.29621 4.40597 4.45582 4.45911 4.58152 4.82071 4.88253 4.97357 5.14586 5.29759 5.40993 5.49471 5.59814 5.88615 5.93382 6.49362 6.78600 7.00558 7.28928 7.52514 7.78964 8.71354 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021780 B = 0.001940 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.286505 B =14430.284768 C =14988.640057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.009 4.009 3 Si 0.960 3.040 4 H -0.256 1.256 5 H -0.232 1.232 6 H -0.274 1.274 7 C -0.331 4.331 8 H 0.063 0.937 9 N -0.578 5.578 10 C 0.445 3.555 11 O -0.615 6.615 12 C 0.139 3.861 13 N -0.729 5.729 14 C 0.706 3.294 15 O -0.630 6.630 16 N -0.732 5.732 17 C 0.119 3.881 18 C 0.067 3.933 19 H 0.125 0.875 20 C -0.134 4.134 21 C -0.143 4.143 22 C 0.025 3.975 23 H 0.125 0.875 24 C 0.460 3.540 25 F -0.182 7.182 26 F -0.191 7.191 27 F -0.174 7.174 28 O -0.367 6.367 29 H 0.281 0.719 30 H 0.392 0.608 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.409 0.591 34 H 0.409 0.591 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.060 -14.931 -1.012 33.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.209 4.209 3 Si 0.780 3.220 4 H -0.180 1.180 5 H -0.156 1.156 6 H -0.199 1.199 7 C -0.460 4.460 8 H 0.081 0.919 9 N -0.218 5.218 10 C 0.233 3.767 11 O -0.501 6.501 12 C 0.010 3.990 13 N -0.386 5.386 14 C 0.405 3.595 15 O -0.511 6.511 16 N -0.388 5.388 17 C -0.005 4.005 18 C 0.010 3.990 19 H 0.143 0.857 20 C -0.172 4.172 21 C -0.181 4.181 22 C -0.035 4.035 23 H 0.143 0.857 24 C 0.406 3.594 25 F -0.163 7.163 26 F -0.173 7.173 27 F -0.155 7.155 28 O -0.286 6.286 29 H 0.091 0.909 30 H 0.228 0.772 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.246 0.754 34 H 0.244 0.756 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.122 0.878 38 H 0.130 0.870 39 H 0.137 0.863 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 29.946 -14.777 -1.087 33.411 hybrid contribution -1.040 0.206 -0.422 1.141 sum 28.906 -14.570 -1.509 32.406 Atomic orbital electron populations 1.69783 1.08054 1.29465 1.49315 1.26090 0.96455 1.02664 0.95719 0.85427 0.79560 0.76914 0.80110 1.17988 1.15550 1.19880 1.19024 0.80985 0.95248 1.50768 0.91932 1.41917 1.06111 1.07440 1.66330 1.20543 0.90125 0.83838 0.82230 1.90527 1.70840 1.32369 1.56379 1.20689 0.89086 0.84216 1.04972 1.44742 1.05753 1.08774 1.79363 1.15906 0.81839 0.84014 0.77724 1.90874 1.55665 1.44405 1.60194 1.44929 1.09042 1.05286 1.79561 1.21940 0.79531 0.95899 1.03133 1.23311 0.97927 0.91283 0.86526 0.85702 1.22916 0.92420 1.03167 0.98665 1.23262 0.97800 1.03017 0.93990 1.24475 0.89737 0.98009 0.91240 0.85733 1.20476 0.73632 0.82007 0.83330 1.93183 1.93028 1.45248 1.84867 1.93207 1.59121 1.90217 1.74713 1.93205 1.47932 1.96342 1.78020 1.89018 1.31197 1.83604 1.24822 0.90926 0.77180 0.88182 0.87812 0.75376 0.75559 0.91907 0.89420 0.87837 0.87033 0.86338 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.62 13.96 21.66 0.30 -54.31 16 2 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 3 Si 0.96 38.11 27.74 68.60 1.90 40.01 16 4 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 5 H -0.23 -7.86 6.52 99.48 0.65 -7.21 16 6 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.33 -18.88 10.16 84.04 0.85 -18.02 16 8 H 0.06 4.21 7.39 -2.91 -0.02 4.19 16 9 N -0.58 -26.64 5.09 -306.98 -1.56 -28.20 16 10 C 0.45 19.48 7.85 87.66 0.69 20.17 16 11 O -0.62 -31.91 15.24 -3.07 -0.05 -31.96 16 12 C 0.14 4.57 6.15 85.63 0.53 5.10 16 13 N -0.73 -22.45 5.53 -482.30 -2.67 -25.12 16 14 C 0.71 20.40 8.57 179.05 1.53 21.93 16 15 O -0.63 -21.78 16.34 -3.97 -0.06 -21.85 16 16 N -0.73 -15.04 5.54 -478.56 -2.65 -17.69 16 17 C 0.12 1.75 5.08 86.38 0.44 2.18 16 18 C 0.07 0.64 3.49 30.96 0.11 0.74 16 19 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 20 C -0.13 -0.49 6.64 31.58 0.21 -0.28 16 21 C -0.14 -0.76 6.34 31.89 0.20 -0.56 16 22 C 0.02 0.28 3.22 31.28 0.10 0.39 16 23 H 0.13 1.20 8.03 -2.39 -0.02 1.18 16 24 C 0.46 7.25 2.93 71.98 0.21 7.46 16 25 F -0.18 -3.22 16.58 44.97 0.75 -2.47 16 26 F -0.19 -3.99 17.32 44.97 0.78 -3.22 16 27 F -0.17 -2.51 17.08 44.97 0.77 -1.74 16 28 O -0.37 -5.55 10.77 -148.98 -1.60 -7.15 16 29 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 30 H 0.39 15.13 5.76 -92.71 -0.53 14.60 16 31 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 32 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 33 H 0.41 12.73 7.45 -92.70 -0.69 12.04 16 34 H 0.41 7.26 8.49 -92.70 -0.79 6.47 16 35 H 0.06 1.03 7.99 -2.38 -0.02 1.01 16 36 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.10 0.17 7.70 -2.38 -0.02 0.15 16 38 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 40 H 0.09 0.53 7.55 -2.38 -0.02 0.51 16 Total: -1.00 -78.28 355.39 0.31 -77.97 By element: Atomic # 1 Polarization: 37.59 SS G_CDS: -0.93 Total: 36.66 kcal Atomic # 6 Polarization: 33.73 SS G_CDS: 5.34 Total: 39.07 kcal Atomic # 7 Polarization: -118.75 SS G_CDS: -6.58 Total: -125.33 kcal Atomic # 8 Polarization: -59.24 SS G_CDS: -1.72 Total: -60.96 kcal Atomic # 9 Polarization: -9.72 SS G_CDS: 2.29 Total: -7.43 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 1.90 Total: 40.01 kcal Total: -78.28 0.31 -77.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635083429.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -210.467 kcal (2) G-P(sol) polarization free energy of solvation -78.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -288.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -288.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds