Wall clock time and date at job start Tue Mar 31 2020 22:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34225 * 116.99751 * 2 1 4 4 O 1.20829 * 120.00366 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99827 * 180.02562 * 3 2 1 6 6 H 1.09006 * 109.99744 * 301.08986 * 5 3 2 7 7 C 1.54324 * 109.88689 * 62.18779 * 5 3 2 8 8 C 1.55156 * 102.94530 * 141.61039 * 7 5 3 9 9 F 1.39898 * 111.00279 * 82.57333 * 8 7 5 10 10 F 1.39894 * 111.00416 * 206.38623 * 8 7 5 11 11 C 1.55126 * 101.48473 * 324.33345 * 8 7 5 12 12 N 1.47020 * 109.88272 * 179.97438 * 5 3 2 13 13 C 1.34779 * 125.64793 * 61.60391 * 12 5 3 14 14 O 1.21588 * 120.00026 * 5.80279 * 13 12 5 15 15 C 1.47640 * 120.00210 * 185.52642 * 13 12 5 16 16 C 1.40008 * 119.89937 * 204.64631 * 15 13 12 17 17 C 1.36325 * 120.10798 * 179.75880 * 16 15 13 18 18 C 1.40885 * 119.88827 * 0.49987 * 17 16 15 19 19 C 1.41115 * 120.10091 * 179.78101 * 18 17 16 20 20 H 1.07996 * 120.00032 * 214.88346 * 19 18 17 21 21 C 1.40221 * 119.99779 * 34.88900 * 19 18 17 22 22 N 1.30652 * 120.00516 * 355.22680 * 21 19 18 23 23 Si 1.86805 * 119.99829 * 175.23075 * 21 19 18 24 24 H 1.48502 * 109.46971 * 89.99903 * 23 21 19 25 25 H 1.48497 * 109.47114 * 209.99881 * 23 21 19 26 26 H 1.48495 * 109.47134 * 330.00125 * 23 21 19 27 27 C 1.40887 * 119.79498 * 359.75877 * 18 17 16 28 28 C 1.36316 * 119.89507 * 359.97438 * 27 18 17 29 29 H 1.09008 * 109.47050 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47024 * 299.99606 * 1 2 3 31 31 H 1.08994 * 109.47475 * 60.00543 * 1 2 3 32 32 H 1.08996 * 110.71973 * 259.97715 * 7 5 3 33 33 H 1.09004 * 110.71847 * 23.06585 * 7 5 3 34 34 H 1.08995 * 110.49913 * 278.45503 * 11 8 7 35 35 H 1.09001 * 110.34361 * 156.05332 * 11 8 7 36 36 H 1.08004 * 119.94661 * 0.02562 * 16 15 13 37 37 H 1.07999 * 120.05325 * 180.25911 * 17 16 15 38 38 H 0.97000 * 120.00038 * 179.97438 * 22 21 19 39 39 H 1.07998 * 120.05179 * 180.02562 * 27 18 17 40 40 H 1.07999 * 119.94983 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9666 0.7660 0.8764 7 6 4.1254 0.6264 -1.2845 8 6 5.3110 1.5560 -1.6554 9 9 6.4569 1.2228 -0.9253 10 9 5.5670 1.5180 -3.0302 11 6 4.7601 2.9430 -1.2323 12 7 3.9932 2.6817 -0.0011 13 6 3.7233 3.5848 0.9622 14 8 3.1663 3.2349 1.9848 15 6 4.1093 4.9980 0.7785 16 6 4.3187 5.8152 1.8958 17 6 4.6801 7.1193 1.7311 18 6 4.8325 7.6471 0.4338 19 6 5.2020 8.9977 0.2581 20 1 4.8068 9.5618 -0.5737 21 6 6.0822 9.6072 1.1635 22 7 6.4871 8.9551 2.2208 23 14 6.6760 11.3519 0.8582 24 1 5.7435 12.3118 1.5017 25 1 8.0346 11.5202 1.4335 26 1 6.7218 11.6105 -0.6034 27 6 4.6154 6.8223 -0.6875 28 6 4.2596 5.5180 -0.5129 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5137 -0.8900 32 1 4.4770 -0.3856 -1.0838 33 1 3.3734 0.6225 -2.0736 34 1 4.1080 3.3471 -2.0065 35 1 5.5809 3.6309 -1.0292 36 1 4.1980 5.4107 2.8899 37 1 4.8455 7.7478 2.5937 38 1 7.0964 9.3766 2.8469 39 1 4.7315 7.2225 -1.6839 40 1 4.0934 4.8848 -1.3718 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649919041.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:23 Heat of formation + Delta-G solvation = -179.101556 kcal Electronic energy + Delta-G solvation = -29786.500158 eV Core-core repulsion = 25202.610585 eV Total energy + Delta-G solvation = -4583.889573 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.08526 -47.26863 -40.93363 -39.40066 -37.51657 -36.64564 -36.33003 -33.87935 -31.88095 -30.03475 -29.89568 -29.33841 -27.66012 -26.13348 -24.53099 -22.40247 -22.04445 -21.24408 -20.59063 -19.35166 -18.34218 -17.68358 -17.38832 -17.22068 -16.81338 -16.59360 -16.33640 -15.74300 -15.36198 -15.29444 -14.65723 -14.21557 -14.15022 -13.79993 -13.59609 -13.51558 -13.42527 -13.16531 -13.12933 -12.93687 -12.59521 -12.56657 -12.27984 -12.11895 -12.02450 -11.81204 -11.50441 -11.30849 -10.97392 -10.96310 -10.90472 -10.60652 -10.54170 -10.03616 -9.59193 -9.40913 -9.23822 -8.75823 -7.74545 -7.47392 -6.87367 -4.65133 2.05911 2.11085 2.41219 2.85067 2.91211 2.97000 2.98005 3.02715 3.38352 3.42989 3.71471 3.78402 3.81070 4.16770 4.54909 4.61170 4.63278 4.84042 4.95970 5.04484 5.12292 5.28612 5.32764 5.37808 5.41594 5.48570 5.58671 5.94620 6.16678 6.21897 6.27722 6.79406 6.84566 6.97455 7.08548 7.43517 7.49359 7.57243 7.68602 7.85999 7.91217 8.07982 8.44211 8.65097 8.71235 8.75510 10.00972 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016199 B = 0.003160 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.095827 B = 8858.986393 C = 9825.397544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.361 6.361 3 C 0.450 3.550 4 O -0.473 6.473 5 C 0.151 3.849 6 H 0.123 0.877 7 C -0.153 4.153 8 C 0.272 3.728 9 F -0.178 7.178 10 F -0.181 7.181 11 C 0.074 3.926 12 N -0.609 5.609 13 C 0.604 3.396 14 O -0.545 6.545 15 C -0.266 4.266 16 C -0.042 4.042 17 C -0.167 4.167 18 C 0.126 3.874 19 C -0.449 4.449 20 H 0.082 0.918 21 C 0.069 3.931 22 N -0.789 5.789 23 Si 0.920 3.080 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.260 1.260 27 C -0.223 4.223 28 C -0.069 4.069 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.099 0.901 37 H 0.133 0.867 38 H 0.284 0.716 39 H 0.100 0.900 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.205 -14.826 -7.164 16.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.278 6.278 3 C 0.288 3.712 4 O -0.357 6.357 5 C 0.045 3.955 6 H 0.141 0.859 7 C -0.192 4.192 8 C 0.235 3.765 9 F -0.159 7.159 10 F -0.162 7.162 11 C -0.050 4.050 12 N -0.347 5.347 13 C 0.402 3.598 14 O -0.423 6.423 15 C -0.270 4.270 16 C -0.061 4.061 17 C -0.186 4.186 18 C 0.123 3.877 19 C -0.478 4.478 20 H 0.100 0.900 21 C -0.149 4.149 22 N -0.414 5.414 23 Si 0.744 3.256 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.184 1.184 27 C -0.242 4.242 28 C -0.087 4.087 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.139 0.861 33 H 0.131 0.869 34 H 0.121 0.879 35 H 0.138 0.862 36 H 0.118 0.882 37 H 0.151 0.849 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.582 -14.586 -6.315 16.293 hybrid contribution 0.244 0.676 -0.222 0.752 sum -3.338 -13.910 -6.536 15.728 Atomic orbital electron populations 1.23260 0.76223 1.03510 1.02753 1.86467 1.23518 1.33223 1.84586 1.23908 0.91927 0.81843 0.73480 1.90743 1.66211 1.36140 1.42561 1.20923 0.87746 0.86010 1.00808 0.85947 1.23584 0.97186 1.00806 0.97577 1.21932 0.83141 0.97592 0.73871 1.93068 1.52622 1.93481 1.76759 1.93037 1.95060 1.97250 1.30864 1.23509 0.98197 0.94220 0.89097 1.48174 1.55808 1.08555 1.22122 1.18460 0.76244 0.85040 0.80082 1.90679 1.43385 1.80628 1.27643 1.18785 1.22210 0.91156 0.94832 1.20522 0.95779 0.93834 0.95974 1.21313 1.04231 0.94484 0.98616 1.17863 0.85755 0.92994 0.91126 1.19763 1.22790 0.95933 1.09271 0.89959 1.26060 0.95371 0.99989 0.93510 1.69681 1.25207 1.37592 1.08949 0.86103 0.78531 0.80931 0.79999 1.19194 1.19997 1.18426 1.20830 1.11802 0.93606 0.97973 1.20770 0.97422 0.95924 0.94613 0.88079 0.91767 0.91943 0.86106 0.86877 0.87864 0.86215 0.88240 0.84911 0.90462 0.88214 0.88197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.29 10.54 -39.24 -0.41 -4.71 16 3 C 0.45 6.66 6.81 36.00 0.25 6.90 16 4 O -0.47 -8.92 14.99 -22.49 -0.34 -9.25 16 5 C 0.15 2.02 3.34 -68.11 -0.23 1.79 16 6 H 0.12 1.53 8.14 -51.93 -0.42 1.11 16 7 C -0.15 -1.43 6.07 -24.90 -0.15 -1.58 16 8 C 0.27 3.10 2.64 -24.47 -0.06 3.03 16 9 F -0.18 -2.30 17.24 2.25 0.04 -2.26 16 10 F -0.18 -2.04 17.23 2.25 0.04 -2.01 16 11 C 0.07 1.01 4.62 -2.43 -0.01 1.00 16 12 N -0.61 -10.13 2.84 -165.40 -0.47 -10.60 16 13 C 0.60 12.89 6.67 -12.42 -0.08 12.81 16 14 O -0.55 -13.09 16.19 -2.36 -0.04 -13.13 16 15 C -0.27 -6.02 5.69 -104.73 -0.60 -6.62 16 16 C -0.04 -1.01 9.52 -39.61 -0.38 -1.39 16 17 C -0.17 -4.23 8.61 -39.27 -0.34 -4.57 16 18 C 0.13 3.17 5.55 -106.80 -0.59 2.57 16 19 C -0.45 -11.13 9.03 -37.75 -0.34 -11.48 16 20 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 21 C 0.07 1.64 5.43 -17.31 -0.09 1.54 16 22 N -0.79 -19.32 10.59 55.56 0.59 -18.73 16 23 Si 0.92 17.66 29.56 -169.99 -5.03 12.64 16 24 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 25 H -0.28 -5.20 7.11 56.52 0.40 -4.79 16 26 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 27 C -0.22 -5.05 9.73 -39.27 -0.38 -5.44 16 28 C -0.07 -1.44 7.98 -39.61 -0.32 -1.76 16 29 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 31 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 32 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.11 0.90 7.84 -51.93 -0.41 0.49 16 34 H 0.10 1.27 6.83 -51.93 -0.35 0.92 16 35 H 0.12 1.75 6.80 -51.93 -0.35 1.39 16 36 H 0.10 2.35 7.82 -52.48 -0.41 1.94 16 37 H 0.13 3.48 6.13 -52.49 -0.32 3.15 16 38 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 39 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 40 H 0.10 1.76 4.57 -52.49 -0.24 1.52 16 LS Contribution 347.65 15.07 5.24 5.24 Total: -1.00 -31.13 347.65 -6.81 -37.94 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -4.17 Total: 6.64 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -2.26 Total: -1.77 kcal Atomic # 7 Polarization: -29.45 SS G_CDS: 0.12 Total: -29.33 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.79 Total: -27.09 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.08 Total: -4.26 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.64 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.13 -6.81 -37.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649919041.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.158 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds