Wall clock time and date at job start Tue Mar 31 2020 22:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34225 * 116.99751 * 2 1 4 4 O 1.20829 * 120.00366 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99827 * 180.02562 * 3 2 1 6 6 H 1.09006 * 109.99744 * 301.08986 * 5 3 2 7 7 C 1.54324 * 109.88689 * 62.18779 * 5 3 2 8 8 C 1.55156 * 102.94530 * 141.61039 * 7 5 3 9 9 F 1.39898 * 111.00279 * 82.57333 * 8 7 5 10 10 F 1.39894 * 111.00416 * 206.38623 * 8 7 5 11 11 C 1.55126 * 101.48473 * 324.33345 * 8 7 5 12 12 N 1.47020 * 109.88272 * 179.97438 * 5 3 2 13 13 C 1.34779 * 125.64793 * 61.60391 * 12 5 3 14 14 O 1.21588 * 120.00026 * 5.80279 * 13 12 5 15 15 C 1.47640 * 120.00210 * 185.52642 * 13 12 5 16 16 C 1.40008 * 119.89937 * 204.64631 * 15 13 12 17 17 C 1.36325 * 120.10798 * 179.75880 * 16 15 13 18 18 C 1.40885 * 119.88827 * 0.49987 * 17 16 15 19 19 C 1.41115 * 120.10091 * 179.78101 * 18 17 16 20 20 H 1.07996 * 120.00032 * 214.88346 * 19 18 17 21 21 C 1.40221 * 119.99779 * 34.88900 * 19 18 17 22 22 N 1.30652 * 120.00516 * 355.22680 * 21 19 18 23 23 Si 1.86805 * 119.99829 * 175.23075 * 21 19 18 24 24 H 1.48502 * 109.46971 * 89.99903 * 23 21 19 25 25 H 1.48497 * 109.47114 * 209.99881 * 23 21 19 26 26 H 1.48495 * 109.47134 * 330.00125 * 23 21 19 27 27 C 1.40887 * 119.79498 * 359.75877 * 18 17 16 28 28 C 1.36316 * 119.89507 * 359.97438 * 27 18 17 29 29 H 1.09008 * 109.47050 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47024 * 299.99606 * 1 2 3 31 31 H 1.08994 * 109.47475 * 60.00543 * 1 2 3 32 32 H 1.08996 * 110.71973 * 259.97715 * 7 5 3 33 33 H 1.09004 * 110.71847 * 23.06585 * 7 5 3 34 34 H 1.08995 * 110.49913 * 278.45503 * 11 8 7 35 35 H 1.09001 * 110.34361 * 156.05332 * 11 8 7 36 36 H 1.08004 * 119.94661 * 0.02562 * 16 15 13 37 37 H 1.07999 * 120.05325 * 180.25911 * 17 16 15 38 38 H 0.97000 * 120.00038 * 179.97438 * 22 21 19 39 39 H 1.07998 * 120.05179 * 180.02562 * 27 18 17 40 40 H 1.07999 * 119.94983 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9666 0.7660 0.8764 7 6 4.1254 0.6264 -1.2845 8 6 5.3110 1.5560 -1.6554 9 9 6.4569 1.2228 -0.9253 10 9 5.5670 1.5180 -3.0302 11 6 4.7601 2.9430 -1.2323 12 7 3.9932 2.6817 -0.0011 13 6 3.7233 3.5848 0.9622 14 8 3.1663 3.2349 1.9848 15 6 4.1093 4.9980 0.7785 16 6 4.3187 5.8152 1.8958 17 6 4.6801 7.1193 1.7311 18 6 4.8325 7.6471 0.4338 19 6 5.2020 8.9977 0.2581 20 1 4.8068 9.5618 -0.5737 21 6 6.0822 9.6072 1.1635 22 7 6.4871 8.9551 2.2208 23 14 6.6760 11.3519 0.8582 24 1 5.7435 12.3118 1.5017 25 1 8.0346 11.5202 1.4335 26 1 6.7218 11.6105 -0.6034 27 6 4.6154 6.8223 -0.6875 28 6 4.2596 5.5180 -0.5129 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5137 -0.8900 32 1 4.4770 -0.3856 -1.0838 33 1 3.3734 0.6225 -2.0736 34 1 4.1080 3.3471 -2.0065 35 1 5.5809 3.6309 -1.0292 36 1 4.1980 5.4107 2.8899 37 1 4.8455 7.7478 2.5937 38 1 7.0964 9.3766 2.8469 39 1 4.7315 7.2225 -1.6839 40 1 4.0934 4.8848 -1.3718 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649919041.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:22 Heat of formation + Delta-G solvation = -196.451935 kcal Electronic energy + Delta-G solvation = -29787.252527 eV Core-core repulsion = 25202.610585 eV Total energy + Delta-G solvation = -4584.641942 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.01665 -48.20117 -42.13284 -40.80530 -39.13012 -38.14958 -37.47303 -35.66459 -33.19583 -31.83964 -31.24737 -30.77620 -28.52018 -27.84516 -25.77197 -23.74101 -23.30731 -22.86765 -22.01358 -20.74934 -19.45868 -19.33637 -18.58407 -18.43460 -18.05383 -17.74219 -17.37512 -17.05878 -16.83848 -16.62361 -16.08480 -15.72569 -15.14154 -14.99828 -14.93339 -14.84561 -14.54490 -14.48337 -14.36906 -14.18064 -14.04729 -13.81268 -13.67830 -13.46910 -13.30514 -13.09806 -12.88744 -12.84187 -12.61479 -12.36519 -11.98936 -11.87053 -11.73769 -11.71090 -11.40658 -11.15532 -10.95400 -10.11869 -9.59602 -9.32525 -8.64801 -6.53652 0.35146 0.98193 1.09253 1.25421 1.40194 1.43630 1.54591 1.66048 2.05595 2.18884 2.38555 2.53935 2.75405 2.80837 3.29425 3.59676 3.61656 3.71691 3.82105 4.00920 4.22491 4.25494 4.28368 4.29027 4.35712 4.41922 4.49751 4.61202 4.67062 4.87727 4.99047 5.03563 5.14558 5.21825 5.26885 5.58706 5.70548 5.87341 6.01351 6.16711 6.24257 6.56774 6.57718 6.79363 6.87040 7.11002 8.25980 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016199 B = 0.003160 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.095827 B = 8858.986393 C = 9825.397544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.350 6.350 3 C 0.454 3.546 4 O -0.521 6.521 5 C 0.142 3.858 6 H 0.132 0.868 7 C -0.134 4.134 8 C 0.283 3.717 9 F -0.187 7.187 10 F -0.176 7.176 11 C 0.061 3.939 12 N -0.608 5.608 13 C 0.604 3.396 14 O -0.582 6.582 15 C -0.275 4.275 16 C -0.055 4.055 17 C -0.187 4.187 18 C 0.099 3.901 19 C -0.478 4.478 20 H 0.089 0.911 21 C 0.028 3.972 22 N -0.822 5.822 23 Si 0.994 3.006 24 H -0.262 1.262 25 H -0.269 1.269 26 H -0.253 1.253 27 C -0.231 4.231 28 C -0.056 4.056 29 H 0.142 0.858 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.158 0.842 33 H 0.135 0.865 34 H 0.122 0.878 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.291 0.709 39 H 0.120 0.880 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.011 -16.531 -9.565 19.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.266 6.266 3 C 0.295 3.705 4 O -0.408 6.408 5 C 0.037 3.963 6 H 0.149 0.851 7 C -0.172 4.172 8 C 0.245 3.755 9 F -0.168 7.168 10 F -0.156 7.156 11 C -0.062 4.062 12 N -0.343 5.343 13 C 0.400 3.600 14 O -0.463 6.463 15 C -0.280 4.280 16 C -0.075 4.075 17 C -0.206 4.206 18 C 0.096 3.904 19 C -0.507 4.507 20 H 0.107 0.893 21 C -0.187 4.187 22 N -0.448 5.448 23 Si 0.814 3.186 24 H -0.187 1.187 25 H -0.193 1.193 26 H -0.177 1.177 27 C -0.250 4.250 28 C -0.075 4.075 29 H 0.160 0.840 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.175 0.825 33 H 0.153 0.847 34 H 0.140 0.860 35 H 0.126 0.874 36 H 0.111 0.889 37 H 0.133 0.867 38 H 0.102 0.898 39 H 0.138 0.862 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.380 -16.358 -8.759 18.861 hybrid contribution 0.118 1.031 0.517 1.160 sum -3.262 -15.327 -8.242 17.705 Atomic orbital electron populations 1.23579 0.74611 1.06016 1.02192 1.86463 1.24989 1.31400 1.83738 1.24123 0.92377 0.81895 0.72124 1.90734 1.67264 1.37787 1.45059 1.21291 0.87307 0.84132 1.03597 0.85069 1.23672 0.96279 1.01476 0.95778 1.21719 0.83361 0.96513 0.73885 1.93063 1.53297 1.93387 1.77046 1.93058 1.95062 1.97145 1.30374 1.23697 0.98044 0.96187 0.88270 1.47898 1.55054 1.09513 1.21820 1.18147 0.76023 0.85225 0.80603 1.90647 1.45077 1.81257 1.29336 1.19078 1.21463 0.92382 0.95042 1.20585 0.96368 0.93947 0.96563 1.21210 1.05964 0.94847 0.98593 1.18213 0.86508 0.94041 0.91661 1.20059 1.23942 0.96322 1.10366 0.89312 1.26988 0.94912 1.04032 0.92807 1.69765 1.25725 1.39451 1.09810 0.85006 0.78042 0.75423 0.80110 1.18701 1.19348 1.17667 1.21088 1.11647 0.94050 0.98189 1.21083 0.95510 0.95729 0.95140 0.83993 0.93282 0.91670 0.82450 0.84726 0.86010 0.87377 0.88946 0.86734 0.89836 0.86195 0.84429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.68 16 2 O -0.35 -7.42 10.54 -51.37 -0.54 -7.96 16 3 C 0.45 12.67 6.81 71.24 0.49 13.16 16 4 O -0.52 -19.42 14.99 25.53 0.38 -19.04 16 5 C 0.14 3.46 3.34 44.59 0.15 3.61 16 6 H 0.13 3.01 8.14 -2.38 -0.02 2.99 16 7 C -0.13 -1.94 6.07 31.78 0.19 -1.75 16 8 C 0.28 5.51 2.64 32.06 0.08 5.59 16 9 F -0.19 -4.32 17.24 44.97 0.78 -3.55 16 10 F -0.18 -3.31 17.23 44.97 0.77 -2.53 16 11 C 0.06 1.54 4.62 86.94 0.40 1.94 16 12 N -0.61 -19.49 2.84 -795.45 -2.26 -21.75 16 13 C 0.60 26.04 6.67 86.73 0.58 26.62 16 14 O -0.58 -28.70 16.19 3.32 0.05 -28.65 16 15 C -0.28 -12.76 5.69 -19.93 -0.11 -12.87 16 16 C -0.06 -2.82 9.52 22.25 0.21 -2.61 16 17 C -0.19 -9.99 8.61 22.47 0.19 -9.79 16 18 C 0.10 5.13 5.55 -21.28 -0.12 5.01 16 19 C -0.48 -24.26 9.03 23.46 0.21 -24.04 16 20 H 0.09 4.23 7.85 -2.91 -0.02 4.20 16 21 C 0.03 1.35 5.43 85.35 0.46 1.81 16 22 N -0.82 -41.61 10.59 21.87 0.23 -41.38 16 23 Si 0.99 36.18 29.56 68.60 2.03 38.21 16 24 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 25 H -0.27 -9.43 7.11 99.48 0.71 -8.72 16 26 H -0.25 -8.84 7.11 99.48 0.71 -8.14 16 27 C -0.23 -10.47 9.73 22.47 0.22 -10.25 16 28 C -0.06 -2.34 7.98 22.25 0.18 -2.17 16 29 H 0.14 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.05 0.97 8.13 -2.39 -0.02 0.95 16 31 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 32 H 0.16 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.13 1.46 7.84 -2.39 -0.02 1.45 16 34 H 0.12 2.62 6.83 -2.39 -0.02 2.60 16 35 H 0.11 3.00 6.80 -2.39 -0.02 2.98 16 36 H 0.09 4.70 7.82 -2.91 -0.02 4.67 16 37 H 0.11 6.43 6.13 -2.91 -0.02 6.41 16 38 H 0.29 13.31 8.29 -92.71 -0.77 12.55 16 39 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 40 H 0.14 4.56 4.57 -2.91 -0.01 4.55 16 Total: -1.00 -71.44 347.65 6.89 -64.55 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 1.10 Total: 26.16 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 4.33 Total: -4.07 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -2.02 Total: -63.12 kcal Atomic # 8 Polarization: -55.54 SS G_CDS: -0.10 Total: -55.65 kcal Atomic # 9 Polarization: -7.63 SS G_CDS: 1.55 Total: -6.08 kcal Atomic # 14 Polarization: 36.18 SS G_CDS: 2.03 Total: 38.21 kcal Total: -71.44 6.89 -64.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649919041.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.899 kcal (2) G-P(sol) polarization free energy of solvation -71.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds