Wall clock time and date at job start Tue Mar 31 2020 22:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34638 * 117.00226 * 2 1 4 4 O 1.21507 * 120.00189 * 359.97438 * 3 2 1 5 5 N 1.34784 * 119.99962 * 179.97438 * 3 2 1 6 6 C 1.47061 * 136.05697 * 359.62803 * 5 3 2 7 7 C 1.53758 * 87.88595 * 152.96014 * 6 5 3 8 8 C 1.53004 * 114.26391 * 139.79159 * 7 6 5 9 9 N 1.46494 * 114.39469 * 272.67296 * 7 6 5 10 10 C 1.34778 * 120.00216 * 273.58585 * 9 7 6 11 11 O 1.21585 * 119.99811 * 359.97438 * 10 9 7 12 12 N 1.34776 * 120.00142 * 180.02562 * 10 9 7 13 13 C 1.46494 * 120.00142 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.47338 * 324.99422 * 13 12 10 15 15 C 1.50704 * 109.47140 * 204.99945 * 13 12 10 16 16 H 1.08000 * 119.99935 * 359.97438 * 15 13 12 17 17 C 1.37877 * 120.00428 * 179.97438 * 15 13 12 18 18 N 1.31518 * 119.99485 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00332 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47349 * 89.99800 * 19 17 15 21 21 H 1.48501 * 109.46930 * 209.99837 * 19 17 15 22 22 H 1.48496 * 109.46819 * 329.99417 * 19 17 15 23 23 C 1.52994 * 109.47607 * 84.99562 * 13 12 10 24 24 F 1.39907 * 109.46805 * 59.99939 * 23 13 12 25 25 F 1.39901 * 109.47654 * 179.97438 * 23 13 12 26 26 F 1.39896 * 109.47237 * 300.00387 * 23 13 12 27 27 C 1.47062 * 136.05762 * 179.97438 * 5 3 2 28 28 H 1.08996 * 109.47468 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47176 * 300.00245 * 1 2 3 30 30 H 1.08994 * 109.46872 * 60.00212 * 1 2 3 31 31 H 1.09001 * 113.47097 * 267.69486 * 6 5 3 32 32 H 1.09001 * 113.46791 * 38.13825 * 6 5 3 33 33 H 1.08999 * 109.47053 * 326.47675 * 8 7 6 34 34 H 1.08998 * 109.47271 * 86.47199 * 8 7 6 35 35 H 1.09001 * 109.47026 * 206.47874 * 8 7 6 36 36 H 0.97003 * 119.99808 * 93.59102 * 9 7 6 37 37 H 0.97003 * 119.99883 * 0.02562 * 12 10 9 38 38 H 0.97003 * 119.99462 * 179.97438 * 18 17 15 39 39 H 1.09008 * 113.46791 * 321.87043 * 27 5 3 40 40 H 1.09000 * 113.46348 * 92.30239 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4016 2.2187 -0.0005 5 7 3.4093 1.2701 0.0005 6 6 4.5201 0.3064 0.0078 7 6 5.3746 1.3726 -0.6973 8 6 6.8188 1.4518 -0.1982 9 7 5.2664 1.3658 -2.1582 10 6 6.0569 0.5546 -2.8887 11 8 6.8602 -0.1711 -2.3353 12 7 5.9577 0.5488 -4.2328 13 6 6.8165 -0.3333 -5.0269 14 1 7.7931 -0.4153 -4.5498 15 6 6.9804 0.2385 -6.4116 16 1 6.4932 1.1660 -6.6740 17 6 7.7523 -0.4223 -7.3435 18 7 8.3461 -1.5515 -7.0237 19 14 7.9549 0.2861 -9.0600 20 1 9.1350 1.1871 -9.0876 21 1 8.1533 -0.8195 -10.0314 22 1 6.7373 1.0536 -9.4255 23 6 6.1764 -1.7197 -5.1201 24 9 4.9229 -1.6144 -5.7325 25 9 6.9963 -2.5619 -5.8789 26 9 6.0243 -2.2505 -3.8347 27 6 4.4134 2.3446 0.0002 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 4.8736 0.0589 1.0087 32 1 4.3330 -0.5762 -0.6039 33 1 6.8483 1.2213 0.8668 34 1 7.4313 0.7331 -0.7425 35 1 7.2055 2.4575 -0.3631 36 1 4.6259 1.9452 -2.5997 37 1 5.3176 1.1287 -4.6744 38 1 8.8888 -2.0166 -7.6795 39 1 4.1353 3.1984 -0.6178 40 1 4.7386 2.6349 0.9993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650510968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:41 Heat of formation + Delta-G solvation = -188.762210 kcal Electronic energy + Delta-G solvation = -31304.269354 eV Core-core repulsion = 26321.484390 eV Total energy + Delta-G solvation = -4982.784964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.33185 -45.98428 -45.60272 -41.19758 -39.85459 -38.57905 -36.30018 -34.76993 -33.57191 -32.61455 -30.80876 -28.33795 -27.95065 -26.37109 -26.28790 -24.57269 -22.38830 -21.09638 -20.40997 -19.53229 -18.44028 -18.08926 -17.20648 -16.89341 -16.81118 -16.73443 -16.59445 -16.12290 -15.51937 -15.00929 -14.91805 -14.44131 -14.36958 -14.23586 -13.84925 -13.32786 -13.07388 -12.96107 -12.89134 -12.54406 -12.42911 -12.38120 -12.29121 -12.24541 -12.04874 -11.96912 -11.81383 -11.78980 -11.19431 -10.93283 -10.91602 -10.85653 -10.70656 -10.64924 -10.39560 -9.69445 -9.39575 -9.17757 -8.83352 -8.72941 -8.22125 -6.25377 -4.49021 1.80283 2.66275 2.93368 3.17466 3.24528 3.27526 3.57543 3.66980 4.13160 4.17410 4.51335 4.61723 4.70675 4.92236 4.94407 4.96203 5.02841 5.04094 5.16827 5.29710 5.34061 5.51779 5.61768 5.73407 5.84106 5.87399 5.88742 6.14505 6.21133 6.47245 6.74758 6.79060 7.18722 7.32021 7.44270 7.59576 7.64067 8.08800 8.47096 8.58617 9.09499 9.21142 10.66265 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016552 B = 0.003305 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.217993 B = 8470.627606 C = 8854.784714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.367 6.367 3 C 0.679 3.321 4 O -0.576 6.576 5 N -0.633 5.633 6 C 0.093 3.907 7 C 0.167 3.833 8 C -0.161 4.161 9 N -0.730 5.730 10 C 0.704 3.296 11 O -0.575 6.575 12 N -0.724 5.724 13 C 0.263 3.737 14 H 0.087 0.913 15 C -0.552 4.552 16 H 0.077 0.923 17 C 0.065 3.935 18 N -0.839 5.839 19 Si 0.915 3.085 20 H -0.276 1.276 21 H -0.283 1.283 22 H -0.271 1.271 23 C 0.415 3.585 24 F -0.211 7.211 25 F -0.138 7.138 26 F -0.216 7.216 27 C 0.128 3.872 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.062 0.938 36 H 0.396 0.604 37 H 0.395 0.605 38 H 0.268 0.732 39 H 0.087 0.913 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.785 5.287 12.549 15.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.280 6.280 3 C 0.435 3.565 4 O -0.466 6.466 5 N -0.375 5.375 6 C -0.031 4.031 7 C 0.077 3.923 8 C -0.219 4.219 9 N -0.386 5.386 10 C 0.405 3.595 11 O -0.453 6.453 12 N -0.377 5.377 13 C 0.157 3.843 14 H 0.104 0.896 15 C -0.590 4.590 16 H 0.095 0.905 17 C -0.144 4.144 18 N -0.472 5.472 19 Si 0.742 3.258 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.196 1.196 23 C 0.359 3.641 24 F -0.193 7.193 25 F -0.119 7.119 26 F -0.198 7.198 27 C 0.006 3.994 28 H 0.121 0.879 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.081 0.919 36 H 0.231 0.769 37 H 0.228 0.772 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.434 4.654 12.946 15.637 hybrid contribution -1.067 0.521 -1.278 1.745 sum -8.501 5.175 11.668 15.336 Atomic orbital electron populations 1.23203 0.74380 1.03536 1.02611 1.86286 1.24017 1.30806 1.86912 1.17301 0.81089 0.82160 0.75972 1.90994 1.63536 1.35190 1.56832 1.48031 1.00606 1.12969 1.75890 1.23783 0.82546 0.95465 1.01348 1.21143 0.95440 0.95212 0.80503 1.22133 0.93901 1.04428 1.01448 1.44659 1.43052 1.46400 1.04475 1.15982 0.81147 0.80366 0.82017 1.90821 1.39854 1.44243 1.70365 1.45303 1.43139 1.45391 1.03823 1.19612 0.90049 0.81577 0.93054 0.89564 1.20874 1.33678 1.10055 0.94343 0.90522 1.25069 0.95004 0.94375 0.99903 1.70403 1.27843 1.13612 1.35354 0.86215 0.78762 0.78680 0.82189 1.20189 1.20803 1.19567 1.23187 0.76360 0.92362 0.72184 1.92989 1.45515 1.96755 1.83997 1.93402 1.70154 1.73787 1.74531 1.93069 1.95951 1.89148 1.41668 1.23412 0.82557 0.91887 1.01554 0.87906 0.91976 0.91797 0.88454 0.89256 0.91586 0.87151 0.91948 0.76933 0.77206 0.92108 0.89474 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 10.56 101.05 1.07 1.61 16 2 O -0.37 -4.86 10.59 -40.32 -0.43 -5.29 16 3 C 0.68 9.78 8.96 54.06 0.48 10.26 16 4 O -0.58 -9.54 16.91 -19.28 -0.33 -9.87 16 5 N -0.63 -7.77 3.69 -190.93 -0.70 -8.48 16 6 C 0.09 1.08 8.06 -8.38 -0.07 1.01 16 7 C 0.17 1.89 1.41 -131.58 -0.19 1.71 16 8 C -0.16 -1.74 9.18 37.16 0.34 -1.40 16 9 N -0.73 -9.93 5.39 -52.12 -0.28 -10.21 16 10 C 0.70 12.89 7.87 -86.92 -0.68 12.20 16 11 O -0.58 -12.23 12.33 5.29 0.07 -12.16 16 12 N -0.72 -14.14 4.99 -59.82 -0.30 -14.43 16 13 C 0.26 6.33 2.21 -69.09 -0.15 6.17 16 14 H 0.09 2.31 7.58 -51.93 -0.39 1.92 16 15 C -0.55 -13.74 8.46 -34.44 -0.29 -14.03 16 16 H 0.08 1.80 7.74 -52.49 -0.41 1.40 16 17 C 0.07 1.67 5.20 -17.82 -0.09 1.57 16 18 N -0.84 -22.57 9.51 55.43 0.53 -22.04 16 19 Si 0.92 19.78 29.54 -169.99 -5.02 14.76 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 C 0.42 10.47 2.81 37.15 0.10 10.57 16 24 F -0.21 -5.17 16.94 2.25 0.04 -5.13 16 25 F -0.14 -3.76 12.91 2.25 0.03 -3.73 16 26 F -0.22 -5.39 15.68 2.25 0.04 -5.35 16 27 C 0.13 1.20 7.91 -8.53 -0.07 1.14 16 28 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.89 7.94 -51.93 -0.41 0.48 16 32 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.07 0.54 7.90 -51.93 -0.41 0.13 16 34 H 0.11 1.64 5.31 -51.93 -0.28 1.37 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.40 4.67 8.68 -40.82 -0.35 4.32 16 37 H 0.39 6.73 8.55 -40.82 -0.35 6.38 16 38 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.09 0.79 8.14 -51.92 -0.42 0.36 16 40 H 0.10 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 351.38 15.07 5.30 5.30 Total: -1.00 -32.36 351.38 -5.30 -37.66 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -4.69 Total: 8.16 kcal Atomic # 6 Polarization: 30.36 SS G_CDS: 0.46 Total: 30.82 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.76 Total: -55.16 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.69 Total: -27.32 kcal Atomic # 9 Polarization: -14.32 SS G_CDS: 0.10 Total: -14.21 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.36 -5.30 -37.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650510968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.099 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds