Wall clock time and date at job start Tue Mar 31 2020 22:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34638 * 117.00226 * 2 1 4 4 O 1.21507 * 120.00189 * 359.97438 * 3 2 1 5 5 N 1.34784 * 119.99962 * 179.97438 * 3 2 1 6 6 C 1.47061 * 136.05697 * 359.62803 * 5 3 2 7 7 C 1.53758 * 87.88595 * 152.96014 * 6 5 3 8 8 C 1.53004 * 114.26391 * 139.79159 * 7 6 5 9 9 N 1.46494 * 114.39469 * 272.67296 * 7 6 5 10 10 C 1.34778 * 120.00216 * 273.58585 * 9 7 6 11 11 O 1.21585 * 119.99811 * 359.97438 * 10 9 7 12 12 N 1.34776 * 120.00142 * 180.02562 * 10 9 7 13 13 C 1.46494 * 120.00142 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.47338 * 324.99422 * 13 12 10 15 15 C 1.50704 * 109.47140 * 204.99945 * 13 12 10 16 16 H 1.08000 * 119.99935 * 359.97438 * 15 13 12 17 17 C 1.37877 * 120.00428 * 179.97438 * 15 13 12 18 18 N 1.31518 * 119.99485 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00332 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47349 * 89.99800 * 19 17 15 21 21 H 1.48501 * 109.46930 * 209.99837 * 19 17 15 22 22 H 1.48496 * 109.46819 * 329.99417 * 19 17 15 23 23 C 1.52994 * 109.47607 * 84.99562 * 13 12 10 24 24 F 1.39907 * 109.46805 * 59.99939 * 23 13 12 25 25 F 1.39901 * 109.47654 * 179.97438 * 23 13 12 26 26 F 1.39896 * 109.47237 * 300.00387 * 23 13 12 27 27 C 1.47062 * 136.05762 * 179.97438 * 5 3 2 28 28 H 1.08996 * 109.47468 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47176 * 300.00245 * 1 2 3 30 30 H 1.08994 * 109.46872 * 60.00212 * 1 2 3 31 31 H 1.09001 * 113.47097 * 267.69486 * 6 5 3 32 32 H 1.09001 * 113.46791 * 38.13825 * 6 5 3 33 33 H 1.08999 * 109.47053 * 326.47675 * 8 7 6 34 34 H 1.08998 * 109.47271 * 86.47199 * 8 7 6 35 35 H 1.09001 * 109.47026 * 206.47874 * 8 7 6 36 36 H 0.97003 * 119.99808 * 93.59102 * 9 7 6 37 37 H 0.97003 * 119.99883 * 0.02562 * 12 10 9 38 38 H 0.97003 * 119.99462 * 179.97438 * 18 17 15 39 39 H 1.09008 * 113.46791 * 321.87043 * 27 5 3 40 40 H 1.09000 * 113.46348 * 92.30239 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4016 2.2187 -0.0005 5 7 3.4093 1.2701 0.0005 6 6 4.5201 0.3064 0.0078 7 6 5.3746 1.3726 -0.6973 8 6 6.8188 1.4518 -0.1982 9 7 5.2664 1.3658 -2.1582 10 6 6.0569 0.5546 -2.8887 11 8 6.8602 -0.1711 -2.3353 12 7 5.9577 0.5488 -4.2328 13 6 6.8165 -0.3333 -5.0269 14 1 7.7931 -0.4153 -4.5498 15 6 6.9804 0.2385 -6.4116 16 1 6.4932 1.1660 -6.6740 17 6 7.7523 -0.4223 -7.3435 18 7 8.3461 -1.5515 -7.0237 19 14 7.9549 0.2861 -9.0600 20 1 9.1350 1.1871 -9.0876 21 1 8.1533 -0.8195 -10.0314 22 1 6.7373 1.0536 -9.4255 23 6 6.1764 -1.7197 -5.1201 24 9 4.9229 -1.6144 -5.7325 25 9 6.9963 -2.5619 -5.8789 26 9 6.0243 -2.2505 -3.8347 27 6 4.4134 2.3446 0.0002 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 4.8736 0.0589 1.0087 32 1 4.3330 -0.5762 -0.6039 33 1 6.8483 1.2213 0.8668 34 1 7.4313 0.7331 -0.7425 35 1 7.2055 2.4575 -0.3631 36 1 4.6259 1.9452 -2.5997 37 1 5.3176 1.1287 -4.6744 38 1 8.8888 -2.0166 -7.6795 39 1 4.1353 3.1984 -0.6178 40 1 4.7386 2.6349 0.9993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650510968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:41 Heat of formation + Delta-G solvation = -213.233340 kcal Electronic energy + Delta-G solvation = -31305.330502 eV Core-core repulsion = 26321.484390 eV Total energy + Delta-G solvation = -4983.846112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.36967 -48.00461 -47.68567 -42.21550 -41.01986 -39.83453 -37.35945 -36.48134 -34.86660 -34.36335 -31.96720 -29.79260 -29.05887 -27.26320 -27.11298 -26.55027 -23.98803 -22.42426 -21.78880 -20.68196 -19.93387 -19.07000 -18.80148 -18.75177 -18.52299 -18.20072 -17.81514 -17.68269 -16.87831 -16.59113 -16.13567 -15.89151 -15.44589 -15.42917 -14.98337 -14.92291 -14.84818 -14.48483 -14.41241 -14.25580 -14.06232 -13.99038 -13.85135 -13.81669 -13.31512 -13.19938 -13.02844 -12.98336 -12.68039 -12.67408 -12.59124 -12.19196 -11.86731 -11.79086 -11.71025 -11.55505 -10.81994 -10.65393 -10.32495 -10.00555 -9.75528 -8.19086 -6.49016 0.91739 1.47404 1.49203 1.58230 1.60915 1.66948 2.14194 2.38373 2.59639 2.75746 2.97064 3.17641 3.25595 3.69824 3.83356 3.91583 4.08570 4.22521 4.23445 4.29444 4.30866 4.45357 4.51669 4.59787 4.62640 4.67295 4.92512 4.95073 5.02644 5.21060 5.39270 5.50026 5.62343 5.66610 5.74072 6.10184 6.45730 6.56043 7.06154 7.16088 7.22091 7.68819 8.73528 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016552 B = 0.003305 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.217993 B = 8470.627606 C = 8854.784714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.380 6.380 3 C 0.671 3.329 4 O -0.604 6.604 5 N -0.636 5.636 6 C 0.094 3.906 7 C 0.157 3.843 8 C -0.154 4.154 9 N -0.714 5.714 10 C 0.702 3.298 11 O -0.606 6.606 12 N -0.723 5.723 13 C 0.273 3.727 14 H 0.053 0.947 15 C -0.561 4.561 16 H 0.090 0.910 17 C 0.017 3.983 18 N -0.873 5.873 19 Si 0.980 3.020 20 H -0.269 1.269 21 H -0.286 1.286 22 H -0.261 1.261 23 C 0.412 3.588 24 F -0.207 7.207 25 F -0.152 7.152 26 F -0.217 7.217 27 C 0.138 3.862 28 H 0.131 0.869 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.128 0.872 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.407 0.593 37 H 0.407 0.593 38 H 0.268 0.732 39 H 0.095 0.905 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.478 6.913 13.205 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 O -0.294 6.294 3 C 0.428 3.572 4 O -0.496 6.496 5 N -0.377 5.377 6 C -0.030 4.030 7 C 0.069 3.931 8 C -0.212 4.212 9 N -0.370 5.370 10 C 0.403 3.597 11 O -0.486 6.486 12 N -0.376 5.376 13 C 0.165 3.835 14 H 0.070 0.930 15 C -0.598 4.598 16 H 0.108 0.892 17 C -0.189 4.189 18 N -0.507 5.507 19 Si 0.804 3.196 20 H -0.195 1.195 21 H -0.211 1.211 22 H -0.185 1.185 23 C 0.355 3.645 24 F -0.189 7.189 25 F -0.133 7.133 26 F -0.199 7.199 27 C 0.017 3.983 28 H 0.149 0.851 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.146 0.854 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.243 0.757 37 H 0.242 0.758 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.160 6.319 13.636 17.101 hybrid contribution -0.884 -0.030 -1.398 1.655 sum -9.043 6.290 12.237 16.465 Atomic orbital electron populations 1.23495 0.72627 1.05502 1.02724 1.86287 1.25901 1.30477 1.86708 1.17520 0.81650 0.82098 0.75940 1.90964 1.64262 1.36014 1.58370 1.48200 1.00264 1.14208 1.75046 1.23901 0.82274 0.94279 1.02525 1.21395 0.96419 0.96432 0.78894 1.22038 0.92428 1.03967 1.02742 1.44543 1.41888 1.45069 1.05531 1.16106 0.81325 0.80661 0.81631 1.90824 1.41272 1.45675 1.70821 1.45065 1.43067 1.45160 1.04356 1.19161 0.89271 0.81766 0.93271 0.92955 1.21213 1.33542 1.10427 0.94600 0.89220 1.25945 0.94611 0.94588 1.03721 1.70529 1.28671 1.14969 1.36520 0.85200 0.79111 0.77872 0.77387 1.19450 1.21128 1.18527 1.23411 0.76380 0.92728 0.71957 1.92982 1.45198 1.96740 1.83946 1.93372 1.70660 1.74328 1.74953 1.93060 1.95953 1.89239 1.41667 1.23603 0.80486 0.90891 1.03277 0.85066 0.91397 0.92185 0.85384 0.92232 0.88436 0.91247 0.90630 0.75699 0.75756 0.92202 0.88713 0.84016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.89 10.56 113.37 1.20 2.09 16 2 O -0.38 -9.75 10.59 -55.47 -0.59 -10.34 16 3 C 0.67 18.56 8.96 129.79 1.16 19.72 16 4 O -0.60 -19.39 16.91 19.82 0.34 -19.05 16 5 N -0.64 -14.33 3.69 -988.38 -3.64 -17.97 16 6 C 0.09 2.02 8.06 83.26 0.67 2.69 16 7 C 0.16 3.25 1.41 4.16 0.01 3.26 16 8 C -0.15 -3.00 9.18 71.98 0.66 -2.34 16 9 N -0.71 -18.65 5.39 -437.08 -2.36 -21.00 16 10 C 0.70 25.70 7.87 179.05 1.41 27.11 16 11 O -0.61 -26.30 12.33 -3.98 -0.05 -26.35 16 12 N -0.72 -28.21 4.99 -461.43 -2.30 -30.51 16 13 C 0.27 13.35 2.21 44.25 0.10 13.44 16 14 H 0.05 2.92 7.58 -2.39 -0.02 2.91 16 15 C -0.56 -27.79 8.46 25.60 0.22 -27.57 16 16 H 0.09 4.11 7.74 -2.91 -0.02 4.08 16 17 C 0.02 0.85 5.20 84.65 0.44 1.29 16 18 N -0.87 -47.67 9.51 21.45 0.20 -47.47 16 19 Si 0.98 40.04 29.54 68.60 2.03 42.07 16 20 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 21 H -0.29 -11.72 7.11 99.48 0.71 -11.02 16 22 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 23 C 0.41 21.08 2.81 71.98 0.20 21.29 16 24 F -0.21 -10.15 16.94 44.97 0.76 -9.39 16 25 F -0.15 -8.49 12.91 44.97 0.58 -7.91 16 26 F -0.22 -11.04 15.68 44.97 0.71 -10.34 16 27 C 0.14 2.15 7.91 83.16 0.66 2.81 16 28 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.13 1.97 7.94 -2.39 -0.02 1.95 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.10 1.27 7.90 -2.39 -0.02 1.25 16 34 H 0.07 2.04 5.31 -2.39 -0.01 2.02 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.41 8.96 8.68 -92.71 -0.81 8.15 16 37 H 0.41 13.57 8.55 -92.71 -0.79 12.78 16 38 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 39 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.14 1.27 8.10 -2.39 -0.02 1.25 16 Total: -1.00 -71.35 351.38 1.92 -69.43 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -0.47 Total: 25.04 kcal Atomic # 6 Polarization: 57.07 SS G_CDS: 6.72 Total: 63.79 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -8.10 Total: -116.95 kcal Atomic # 8 Polarization: -55.44 SS G_CDS: -0.30 Total: -55.74 kcal Atomic # 9 Polarization: -29.69 SS G_CDS: 2.05 Total: -27.64 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -71.35 1.92 -69.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650510968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.804 kcal (2) G-P(sol) polarization free energy of solvation -71.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds