Wall clock time and date at job start Tue Mar 31 2020 22:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34642 * 116.99964 * 2 1 4 4 O 1.21508 * 120.00132 * 359.97438 * 3 2 1 5 5 N 1.34782 * 119.99859 * 180.02562 * 3 2 1 6 6 C 1.47062 * 136.05699 * 359.62948 * 5 3 2 7 7 C 1.53753 * 87.88595 * 152.96581 * 6 5 3 8 8 C 1.53005 * 114.26947 * 139.79135 * 7 6 5 9 9 N 1.46502 * 114.39355 * 272.67019 * 7 6 5 10 10 C 1.34771 * 120.00654 * 273.59106 * 9 7 6 11 11 O 1.21591 * 119.99690 * 359.97438 * 10 9 7 12 12 N 1.34770 * 120.00801 * 179.97438 * 10 9 7 13 13 C 1.46496 * 120.00574 * 179.97438 * 12 10 9 14 14 H 1.08995 * 109.46779 * 35.00228 * 13 12 10 15 15 C 1.50703 * 109.47039 * 155.00023 * 13 12 10 16 16 H 1.08002 * 119.99592 * 116.82451 * 15 13 12 17 17 C 1.37873 * 119.99944 * 296.81771 * 15 13 12 18 18 N 1.31520 * 119.99994 * 174.11417 * 17 15 13 19 19 Si 1.86792 * 120.00170 * 354.12288 * 17 15 13 20 20 H 1.48494 * 109.47572 * 85.16621 * 19 17 15 21 21 H 1.48507 * 109.47240 * 205.16950 * 19 17 15 22 22 H 1.48498 * 109.47283 * 325.16516 * 19 17 15 23 23 C 1.53003 * 109.47056 * 275.00039 * 13 12 10 24 24 F 1.39902 * 109.47177 * 65.23736 * 23 13 12 25 25 F 1.39902 * 109.46727 * 185.23464 * 23 13 12 26 26 F 1.39894 * 109.47410 * 305.23252 * 23 13 12 27 27 C 1.47070 * 136.05293 * 179.97438 * 5 3 2 28 28 H 1.09007 * 109.47212 * 299.99981 * 1 2 3 29 29 H 1.08997 * 109.47569 * 60.00091 * 1 2 3 30 30 H 1.09002 * 109.47119 * 180.02562 * 1 2 3 31 31 H 1.09008 * 113.46525 * 267.69219 * 6 5 3 32 32 H 1.08996 * 113.47278 * 38.13453 * 6 5 3 33 33 H 1.09001 * 109.46987 * 326.47130 * 8 7 6 34 34 H 1.08997 * 109.47200 * 86.46986 * 8 7 6 35 35 H 1.09000 * 109.47118 * 206.47168 * 8 7 6 36 36 H 0.97004 * 119.99783 * 93.58860 * 9 7 6 37 37 H 0.97004 * 119.99636 * 359.97438 * 12 10 9 38 38 H 0.96994 * 120.00306 * 180.02562 * 18 17 15 39 39 H 1.08996 * 113.46957 * 321.86215 * 27 5 3 40 40 H 1.09005 * 113.46400 * 92.30862 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.5200 0.3065 0.0054 7 6 5.3740 1.3730 -0.6997 8 6 6.8186 1.4522 -0.2017 9 7 5.2648 1.3669 -2.1606 10 6 6.0546 0.5562 -2.8921 11 8 6.8583 -0.1699 -2.3396 12 7 5.9538 0.5502 -4.2360 13 6 6.8127 -0.3307 -5.0312 14 1 6.9770 -1.2628 -4.4905 15 6 6.1459 -0.6259 -6.3501 16 1 6.6073 -0.3046 -7.2722 17 6 4.9470 -1.3060 -6.3794 18 7 4.3074 -1.4626 -7.5179 19 14 4.2308 -2.0049 -4.8021 20 1 3.4496 -0.9526 -4.1041 21 1 3.3410 -3.1487 -5.1267 22 1 5.3326 -2.4694 -3.9214 23 6 8.1562 0.3573 -5.2817 24 9 8.8287 0.5236 -4.0662 25 9 8.9310 -0.4311 -6.1393 26 9 7.9374 1.6081 -5.8686 27 6 4.4132 2.3448 -0.0012 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 4.8743 0.0587 1.0061 32 1 4.3326 -0.5759 -0.6064 33 1 6.8490 1.2213 0.8632 34 1 7.4307 0.7338 -0.7468 35 1 7.2051 2.4579 -0.3665 36 1 4.6238 1.9465 -2.6014 37 1 5.3124 1.1292 -4.6769 38 1 3.4637 -1.9407 -7.5385 39 1 4.1347 3.1987 -0.6187 40 1 4.7393 2.6347 0.9977 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650510969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:44 Heat of formation + Delta-G solvation = -209.471753 kcal Electronic energy + Delta-G solvation = -31510.561529 eV Core-core repulsion = 26526.878532 eV Total energy + Delta-G solvation = -4983.682997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.08840 -46.59439 -46.58045 -41.22078 -39.88822 -38.67647 -36.30441 -35.00523 -33.61916 -32.55135 -30.96810 -28.68516 -28.20043 -26.40003 -26.29804 -25.02761 -22.31900 -21.10025 -20.55532 -19.54635 -18.51117 -18.13920 -17.73961 -17.46721 -17.19846 -16.84839 -16.75080 -16.44722 -15.88152 -15.23741 -14.84297 -14.44587 -14.37788 -14.22783 -13.96333 -13.52157 -13.47639 -13.18532 -13.11963 -13.04350 -12.90700 -12.77761 -12.69274 -12.68465 -12.47917 -12.29440 -12.10037 -11.83710 -11.76541 -11.19754 -10.92588 -10.81542 -10.71194 -10.65604 -10.22056 -9.89222 -9.51757 -9.20713 -9.02431 -8.87265 -8.41226 -6.54485 -4.67765 1.79782 2.66084 2.84261 3.10622 3.18962 3.28386 3.45747 3.64833 3.87669 4.07489 4.12857 4.38593 4.60522 4.91539 4.95263 4.96764 5.00634 5.02054 5.05145 5.15925 5.20176 5.28659 5.32912 5.37192 5.51195 5.57583 5.69941 5.84773 6.14508 6.34148 6.43001 6.71012 6.85404 7.10280 7.32772 7.43711 7.87669 8.08668 8.48844 8.50640 8.98972 9.03687 10.53605 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012538 B = 0.004539 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.589798 B = 6167.492148 C = 7717.372083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.368 6.368 3 C 0.679 3.321 4 O -0.574 6.574 5 N -0.633 5.633 6 C 0.092 3.908 7 C 0.164 3.836 8 C -0.160 4.160 9 N -0.730 5.730 10 C 0.697 3.303 11 O -0.581 6.581 12 N -0.729 5.729 13 C 0.220 3.780 14 H 0.092 0.908 15 C -0.536 4.536 16 H 0.095 0.905 17 C 0.097 3.903 18 N -0.861 5.861 19 Si 0.882 3.118 20 H -0.273 1.273 21 H -0.288 1.288 22 H -0.257 1.257 23 C 0.441 3.559 24 F -0.192 7.192 25 F -0.185 7.185 26 F -0.191 7.191 27 C 0.128 3.872 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.062 0.938 36 H 0.398 0.602 37 H 0.398 0.602 38 H 0.275 0.725 39 H 0.088 0.912 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.772 4.944 14.813 15.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.281 6.281 3 C 0.435 3.565 4 O -0.464 6.464 5 N -0.375 5.375 6 C -0.032 4.032 7 C 0.074 3.926 8 C -0.218 4.218 9 N -0.386 5.386 10 C 0.398 3.602 11 O -0.459 6.459 12 N -0.385 5.385 13 C 0.117 3.883 14 H 0.110 0.890 15 C -0.574 4.574 16 H 0.113 0.887 17 C -0.113 4.113 18 N -0.494 5.494 19 Si 0.708 3.292 20 H -0.199 1.199 21 H -0.214 1.214 22 H -0.181 1.181 23 C 0.386 3.614 24 F -0.174 7.174 25 F -0.166 7.166 26 F -0.172 7.172 27 C 0.007 3.993 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.081 0.919 36 H 0.233 0.767 37 H 0.234 0.766 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.695 4.459 15.167 15.899 hybrid contribution -1.292 0.339 0.290 1.367 sum -2.987 4.797 15.457 16.458 Atomic orbital electron populations 1.23215 0.74317 1.03563 1.02669 1.86279 1.24091 1.30842 1.86916 1.17297 0.81072 0.82175 0.75952 1.90995 1.63489 1.35163 1.56737 1.48013 1.00611 1.12907 1.75988 1.23777 0.82704 0.95400 1.01312 1.21195 0.95501 0.95293 0.80591 1.22120 0.93812 1.04467 1.01393 1.44805 1.43032 1.46207 1.04520 1.16353 0.80914 0.80508 0.82432 1.90795 1.39972 1.44437 1.70716 1.46911 1.42225 1.45906 1.03494 1.20139 0.83505 0.89950 0.94751 0.89040 1.20829 1.07653 1.38829 0.90127 0.88660 1.24918 0.95769 0.93926 0.96679 1.69876 1.15418 1.38213 1.25905 0.86734 0.79864 0.79290 0.83263 1.19854 1.21414 1.18118 1.21525 0.89499 0.77259 0.73159 1.93145 1.83135 1.95694 1.45406 1.93108 1.77618 1.74488 1.71422 1.93079 1.95009 1.44382 1.84768 1.23403 0.82500 0.91895 1.01532 0.91913 0.91744 0.87901 0.88372 0.89533 0.91593 0.87155 0.91934 0.76747 0.76642 0.91532 0.89410 0.87691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.58 10.56 101.05 1.07 1.65 16 2 O -0.37 -5.19 10.59 -40.33 -0.43 -5.62 16 3 C 0.68 10.31 8.96 54.06 0.48 10.80 16 4 O -0.57 -9.93 16.91 -19.28 -0.33 -10.26 16 5 N -0.63 -8.18 3.69 -190.88 -0.70 -8.89 16 6 C 0.09 1.11 8.06 -8.36 -0.07 1.04 16 7 C 0.16 1.93 1.41 -131.58 -0.19 1.75 16 8 C -0.16 -1.74 9.18 37.16 0.34 -1.40 16 9 N -0.73 -10.50 5.39 -52.12 -0.28 -10.78 16 10 C 0.70 12.79 7.73 -86.93 -0.67 12.11 16 11 O -0.58 -11.89 12.32 5.29 0.07 -11.83 16 12 N -0.73 -14.28 3.20 -59.82 -0.19 -14.47 16 13 C 0.22 4.90 1.41 -69.08 -0.10 4.80 16 14 H 0.09 2.17 6.29 -51.93 -0.33 1.84 16 15 C -0.54 -13.45 8.64 -34.44 -0.30 -13.75 16 16 H 0.10 2.61 7.91 -52.49 -0.42 2.20 16 17 C 0.10 2.48 5.46 -17.82 -0.10 2.38 16 18 N -0.86 -23.44 13.96 55.43 0.77 -22.67 16 19 Si 0.88 20.23 26.13 -169.99 -4.44 15.79 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.26 -6.03 6.55 56.52 0.37 -5.66 16 23 C 0.44 9.42 2.79 37.16 0.10 9.52 16 24 F -0.19 -4.01 15.84 2.25 0.04 -3.98 16 25 F -0.18 -4.02 16.83 2.25 0.04 -3.98 16 26 F -0.19 -3.99 16.97 2.25 0.04 -3.95 16 27 C 0.13 1.27 7.91 -8.50 -0.07 1.20 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.10 0.91 7.94 -51.92 -0.41 0.50 16 32 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.07 0.54 7.90 -51.93 -0.41 0.13 16 34 H 0.11 1.63 5.31 -51.93 -0.28 1.35 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.40 5.16 8.68 -40.82 -0.35 4.80 16 37 H 0.40 7.28 8.61 -40.82 -0.35 6.93 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.11 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 352.61 15.07 5.31 5.31 Total: -1.00 -31.64 352.61 -4.26 -35.90 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -4.67 Total: 9.32 kcal Atomic # 6 Polarization: 29.59 SS G_CDS: 0.51 Total: 30.10 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.40 Total: -56.81 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.69 Total: -27.70 kcal Atomic # 9 Polarization: -12.02 SS G_CDS: 0.11 Total: -11.91 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.44 Total: 15.79 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.64 -4.26 -35.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650510969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.573 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds