Wall clock time and date at job start Tue Mar 31 2020 22:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34642 * 116.99964 * 2 1 4 4 O 1.21508 * 120.00132 * 359.97438 * 3 2 1 5 5 N 1.34782 * 119.99859 * 180.02562 * 3 2 1 6 6 C 1.47062 * 136.05699 * 359.62948 * 5 3 2 7 7 C 1.53753 * 87.88595 * 152.96581 * 6 5 3 8 8 C 1.53005 * 114.26947 * 139.79135 * 7 6 5 9 9 N 1.46502 * 114.39355 * 272.67019 * 7 6 5 10 10 C 1.34771 * 120.00654 * 273.59106 * 9 7 6 11 11 O 1.21591 * 119.99690 * 359.97438 * 10 9 7 12 12 N 1.34770 * 120.00801 * 179.97438 * 10 9 7 13 13 C 1.46496 * 120.00574 * 179.97438 * 12 10 9 14 14 H 1.08995 * 109.46779 * 35.00228 * 13 12 10 15 15 C 1.50703 * 109.47039 * 155.00023 * 13 12 10 16 16 H 1.08002 * 119.99592 * 116.82451 * 15 13 12 17 17 C 1.37873 * 119.99944 * 296.81771 * 15 13 12 18 18 N 1.31520 * 119.99994 * 174.11417 * 17 15 13 19 19 Si 1.86792 * 120.00170 * 354.12288 * 17 15 13 20 20 H 1.48494 * 109.47572 * 85.16621 * 19 17 15 21 21 H 1.48507 * 109.47240 * 205.16950 * 19 17 15 22 22 H 1.48498 * 109.47283 * 325.16516 * 19 17 15 23 23 C 1.53003 * 109.47056 * 275.00039 * 13 12 10 24 24 F 1.39902 * 109.47177 * 65.23736 * 23 13 12 25 25 F 1.39902 * 109.46727 * 185.23464 * 23 13 12 26 26 F 1.39894 * 109.47410 * 305.23252 * 23 13 12 27 27 C 1.47070 * 136.05293 * 179.97438 * 5 3 2 28 28 H 1.09007 * 109.47212 * 299.99981 * 1 2 3 29 29 H 1.08997 * 109.47569 * 60.00091 * 1 2 3 30 30 H 1.09002 * 109.47119 * 180.02562 * 1 2 3 31 31 H 1.09008 * 113.46525 * 267.69219 * 6 5 3 32 32 H 1.08996 * 113.47278 * 38.13453 * 6 5 3 33 33 H 1.09001 * 109.46987 * 326.47130 * 8 7 6 34 34 H 1.08997 * 109.47200 * 86.46986 * 8 7 6 35 35 H 1.09000 * 109.47118 * 206.47168 * 8 7 6 36 36 H 0.97004 * 119.99783 * 93.58860 * 9 7 6 37 37 H 0.97004 * 119.99636 * 359.97438 * 12 10 9 38 38 H 0.96994 * 120.00306 * 180.02562 * 18 17 15 39 39 H 1.08996 * 113.46957 * 321.86215 * 27 5 3 40 40 H 1.09005 * 113.46400 * 92.30862 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.5200 0.3065 0.0054 7 6 5.3740 1.3730 -0.6997 8 6 6.8186 1.4522 -0.2017 9 7 5.2648 1.3669 -2.1606 10 6 6.0546 0.5562 -2.8921 11 8 6.8583 -0.1699 -2.3396 12 7 5.9538 0.5502 -4.2360 13 6 6.8127 -0.3307 -5.0312 14 1 6.9770 -1.2628 -4.4905 15 6 6.1459 -0.6259 -6.3501 16 1 6.6073 -0.3046 -7.2722 17 6 4.9470 -1.3060 -6.3794 18 7 4.3074 -1.4626 -7.5179 19 14 4.2308 -2.0049 -4.8021 20 1 3.4496 -0.9526 -4.1041 21 1 3.3410 -3.1487 -5.1267 22 1 5.3326 -2.4694 -3.9214 23 6 8.1562 0.3573 -5.2817 24 9 8.8287 0.5236 -4.0662 25 9 8.9310 -0.4311 -6.1393 26 9 7.9374 1.6081 -5.8686 27 6 4.4132 2.3448 -0.0012 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 4.8743 0.0587 1.0061 32 1 4.3326 -0.5759 -0.6064 33 1 6.8490 1.2213 0.8632 34 1 7.4307 0.7338 -0.7468 35 1 7.2051 2.4579 -0.3665 36 1 4.6238 1.9465 -2.6014 37 1 5.3124 1.1292 -4.6769 38 1 3.4637 -1.9407 -7.5385 39 1 4.1347 3.1987 -0.6187 40 1 4.7393 2.6347 0.9977 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650510969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:43 Heat of formation + Delta-G solvation = -233.351598 kcal Electronic energy + Delta-G solvation = -31511.597037 eV Core-core repulsion = 26526.878532 eV Total energy + Delta-G solvation = -4984.718505 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.83231 -48.33713 -48.31731 -42.26298 -41.09243 -39.92822 -37.40726 -36.68935 -34.89920 -34.39755 -32.17160 -30.25085 -29.10208 -27.29961 -27.14760 -26.92220 -23.80873 -22.49663 -21.84940 -20.73387 -20.11128 -19.40466 -19.18125 -19.04155 -18.58493 -18.31670 -18.24287 -17.76513 -17.17289 -16.48093 -16.23740 -15.88248 -15.61329 -15.37148 -15.23576 -15.20103 -14.93528 -14.83413 -14.77937 -14.56971 -14.51688 -14.45781 -14.13478 -13.81832 -13.66856 -13.32484 -13.23401 -13.04707 -12.99106 -12.71298 -12.50695 -12.08345 -11.90960 -11.89062 -11.83015 -11.75652 -11.07139 -10.83214 -10.37999 -10.10336 -9.83226 -8.54663 -6.71081 0.88018 1.21861 1.31328 1.41031 1.54533 1.58836 1.92641 2.14287 2.26529 2.71362 2.79319 3.13330 3.15465 3.27170 3.43071 3.64391 3.71671 4.05397 4.19010 4.25614 4.26954 4.40495 4.47833 4.49981 4.57084 4.61905 4.65561 4.92240 4.94992 5.01342 5.17276 5.34264 5.55486 5.69100 5.82015 6.03982 6.41841 6.43483 6.99073 7.02133 7.06295 7.57741 8.57572 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012538 B = 0.004539 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.589798 B = 6167.492148 C = 7717.372083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.381 6.381 3 C 0.671 3.329 4 O -0.604 6.604 5 N -0.637 5.637 6 C 0.093 3.907 7 C 0.155 3.845 8 C -0.152 4.152 9 N -0.720 5.720 10 C 0.697 3.303 11 O -0.601 6.601 12 N -0.732 5.732 13 C 0.231 3.769 14 H 0.080 0.920 15 C -0.538 4.538 16 H 0.065 0.935 17 C 0.063 3.937 18 N -0.901 5.901 19 Si 0.936 3.064 20 H -0.263 1.263 21 H -0.288 1.288 22 H -0.265 1.265 23 C 0.445 3.555 24 F -0.186 7.186 25 F -0.188 7.188 26 F -0.187 7.187 27 C 0.137 3.863 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.406 0.594 37 H 0.405 0.595 38 H 0.278 0.722 39 H 0.092 0.908 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.932 5.695 17.413 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.295 6.295 3 C 0.427 3.573 4 O -0.496 6.496 5 N -0.379 5.379 6 C -0.030 4.030 7 C 0.066 3.934 8 C -0.210 4.210 9 N -0.375 5.375 10 C 0.398 3.602 11 O -0.480 6.480 12 N -0.389 5.389 13 C 0.125 3.875 14 H 0.098 0.902 15 C -0.576 4.576 16 H 0.083 0.917 17 C -0.142 4.142 18 N -0.537 5.537 19 Si 0.762 3.238 20 H -0.188 1.188 21 H -0.214 1.214 22 H -0.189 1.189 23 C 0.389 3.611 24 F -0.168 7.168 25 F -0.170 7.170 26 F -0.169 7.169 27 C 0.017 3.983 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.241 0.759 37 H 0.242 0.758 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.860 5.236 17.795 18.642 hybrid contribution -1.185 0.127 -0.487 1.287 sum -3.044 5.363 17.308 18.374 Atomic orbital electron populations 1.23506 0.72620 1.05550 1.02735 1.86278 1.25927 1.30542 1.86736 1.17541 0.81718 0.82089 0.75962 1.90965 1.64279 1.36013 1.58320 1.48212 1.00247 1.14333 1.75068 1.23938 0.82224 0.94183 1.02705 1.21465 0.96680 0.96466 0.78770 1.22031 0.92075 1.04035 1.02833 1.44742 1.41984 1.45012 1.05812 1.16320 0.81231 0.80851 0.81838 1.90807 1.40939 1.45389 1.70895 1.46396 1.42285 1.45885 1.04290 1.19715 0.84025 0.90234 0.93488 0.90244 1.20771 1.07582 1.38874 0.90345 0.91684 1.25427 0.96042 0.94095 0.98683 1.69950 1.16274 1.39815 1.27612 0.85893 0.78923 0.78827 0.80206 1.18780 1.21429 1.18947 1.21348 0.89151 0.77286 0.73273 1.93155 1.82953 1.95658 1.45027 1.93101 1.77650 1.74641 1.71582 1.93084 1.94988 1.44066 1.84738 1.23618 0.80483 0.90866 1.03325 0.91186 0.92391 0.84999 0.84949 0.92307 0.88286 0.90839 0.90797 0.75859 0.75837 0.91203 0.88959 0.83809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.94 10.56 113.37 1.20 2.14 16 2 O -0.38 -10.22 10.59 -55.51 -0.59 -10.80 16 3 C 0.67 19.26 8.96 129.79 1.16 20.42 16 4 O -0.60 -20.12 16.91 19.81 0.34 -19.78 16 5 N -0.64 -14.76 3.69 -988.21 -3.64 -18.40 16 6 C 0.09 1.97 8.06 83.27 0.67 2.64 16 7 C 0.15 3.18 1.41 4.16 0.01 3.18 16 8 C -0.15 -2.80 9.18 71.98 0.66 -2.14 16 9 N -0.72 -19.25 5.39 -437.08 -2.36 -21.61 16 10 C 0.70 24.61 7.73 179.06 1.38 25.99 16 11 O -0.60 -23.91 12.32 -4.00 -0.05 -23.96 16 12 N -0.73 -28.05 3.20 -461.43 -1.48 -29.53 16 13 C 0.23 10.24 1.41 44.25 0.06 10.30 16 14 H 0.08 3.76 6.29 -2.39 -0.02 3.74 16 15 C -0.54 -27.33 8.64 25.60 0.22 -27.11 16 16 H 0.06 3.67 7.91 -2.91 -0.02 3.65 16 17 C 0.06 3.28 5.46 84.65 0.46 3.74 16 18 N -0.90 -49.76 13.96 21.45 0.30 -49.47 16 19 Si 0.94 41.83 26.13 68.60 1.79 43.62 16 20 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.26 -12.12 6.55 99.48 0.65 -11.46 16 23 C 0.45 18.85 2.79 71.98 0.20 19.05 16 24 F -0.19 -7.61 15.84 44.97 0.71 -6.90 16 25 F -0.19 -8.19 16.83 44.97 0.76 -7.43 16 26 F -0.19 -7.72 16.97 44.97 0.76 -6.96 16 27 C 0.14 2.20 7.91 83.18 0.66 2.85 16 28 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.13 1.90 7.94 -2.38 -0.02 1.88 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.10 1.16 7.90 -2.39 -0.02 1.15 16 34 H 0.07 2.01 5.31 -2.39 -0.01 2.00 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.41 9.67 8.68 -92.71 -0.81 8.87 16 37 H 0.41 14.47 8.61 -92.71 -0.80 13.67 16 38 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 39 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.14 1.28 8.10 -2.38 -0.02 1.26 16 Total: -1.00 -68.95 352.61 2.70 -66.24 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: -0.53 Total: 23.89 kcal Atomic # 6 Polarization: 54.39 SS G_CDS: 6.69 Total: 61.07 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -7.17 Total: -119.00 kcal Atomic # 8 Polarization: -54.24 SS G_CDS: -0.30 Total: -54.54 kcal Atomic # 9 Polarization: -23.52 SS G_CDS: 2.23 Total: -21.29 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.79 Total: 43.62 kcal Total: -68.95 2.70 -66.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650510969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.107 kcal (2) G-P(sol) polarization free energy of solvation -68.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds