Wall clock time and date at job start Tue Mar 31 2020 22:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86795 * 120.00430 * 2 1 4 4 H 1.48491 * 109.47601 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47196 * 299.99977 * 3 2 1 6 6 H 1.48504 * 109.47065 * 59.99551 * 3 2 1 7 7 C 1.38953 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00111 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00066 * 359.97438 * 7 2 1 10 10 C 1.34769 * 120.00196 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99930 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00236 * 179.97438 * 10 9 7 13 13 S 1.80993 * 109.47461 * 180.02562 * 12 10 9 14 14 C 1.76192 * 100.00191 * 180.02562 * 13 12 10 15 15 N 1.31289 * 126.48472 * 0.02562 * 14 13 12 16 16 N 1.28522 * 109.85615 * 179.97438 * 15 14 13 17 17 C 1.30297 * 110.07886 * 359.72039 * 16 15 14 18 18 C 1.50701 * 126.34152 * 180.30825 * 17 16 15 19 19 C 1.52997 * 117.50091 * 8.78036 * 18 17 16 20 20 C 1.53003 * 60.00305 * 252.50937 * 19 18 17 21 21 N 1.36543 * 126.48656 * 180.02562 * 14 13 12 22 22 C 1.46500 * 127.13943 * 0.02562 * 21 14 13 23 23 C 1.52997 * 109.47473 * 90.02358 * 22 21 14 24 24 C 1.50701 * 109.47212 * 179.97438 * 23 22 21 25 25 N 1.34780 * 119.99795 * 179.97438 * 24 23 22 26 26 O 1.21280 * 119.99781 * 0.02562 * 24 23 22 27 27 H 0.97002 * 120.00068 * 0.02562 * 1 2 3 28 28 H 0.97008 * 119.99916 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.46550 * 60.00246 * 12 10 9 30 30 H 1.08996 * 109.47353 * 300.00559 * 12 10 9 31 31 H 1.09001 * 115.55062 * 154.48898 * 18 17 16 32 32 H 1.09005 * 117.49822 * 359.97438 * 19 18 17 33 33 H 1.09002 * 117.50163 * 145.02369 * 19 18 17 34 34 H 1.09001 * 117.50121 * 252.51378 * 20 19 18 35 35 H 1.09001 * 117.51970 * 107.47316 * 20 19 18 36 36 H 1.09002 * 109.47129 * 330.02101 * 22 21 14 37 37 H 1.08998 * 109.46845 * 210.02907 * 22 21 14 38 38 H 1.09002 * 109.47153 * 59.99757 * 23 22 21 39 39 H 1.09001 * 109.46832 * 299.99948 * 23 22 21 40 40 H 0.96995 * 120.00011 * 0.02562 * 25 24 23 41 41 H 0.96998 * 119.99539 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9971 -3.5579 0.0026 11 8 3.2101 -3.5579 0.0031 12 6 1.2436 -4.8630 0.0044 13 16 2.4197 -6.2387 0.0062 14 6 1.2996 -7.5988 0.0073 15 7 -0.0115 -7.5304 0.0063 16 7 -0.5104 -8.7148 0.0070 17 6 0.4437 -9.6022 0.0025 18 6 0.2709 -11.0992 -0.0049 19 6 -1.1424 -11.6463 -0.2146 20 6 -0.4872 -11.7287 1.1656 21 7 1.6309 -8.9235 0.0093 22 6 2.9784 -9.4982 0.0115 23 6 3.4458 -9.6971 1.4547 24 6 4.8317 -10.2889 1.4569 25 7 5.4503 -10.5519 2.6252 26 8 5.3908 -10.5276 0.4075 27 1 -0.4850 0.8401 -0.0004 28 1 0.3532 -2.3907 0.0016 29 1 0.6167 -4.9217 -0.8854 30 1 0.6172 -4.9197 0.8946 31 1 1.0987 -11.6659 -0.4313 32 1 -1.9475 -10.9233 -0.3468 33 1 -1.2448 -12.5730 -0.7792 34 1 -0.1584 -12.7096 1.5089 35 1 -0.8607 -11.0600 1.9412 36 1 3.6624 -8.8225 -0.5021 37 1 2.9641 -10.4597 -0.5016 38 1 2.7618 -10.3727 1.9683 39 1 3.4601 -8.7354 1.9677 40 1 5.0032 -10.3606 3.4644 41 1 6.3422 -10.9332 2.6265 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652593290.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:27 Heat of formation + Delta-G solvation = 23.367242 kcal Electronic energy + Delta-G solvation = -25942.135940 eV Core-core repulsion = 21985.451962 eV Total energy + Delta-G solvation = -3956.683978 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.94775 -39.95137 -38.22732 -37.46579 -35.74646 -34.14472 -34.09523 -31.46480 -31.16600 -30.58906 -29.20409 -25.61389 -24.74920 -24.16088 -22.89343 -22.46686 -21.01772 -20.25297 -19.59554 -18.25855 -17.99393 -17.76157 -16.96920 -16.68044 -16.10853 -16.00139 -15.91773 -15.50148 -14.92036 -14.56688 -14.55769 -14.14198 -14.08957 -13.87939 -13.32144 -13.11815 -12.72783 -12.52367 -12.15693 -11.91039 -11.81359 -11.62027 -11.53638 -11.41044 -11.13356 -10.95747 -10.73774 -10.63041 -10.39754 -10.31320 -10.30461 -10.16955 -10.10404 -9.64211 -9.61095 -8.68007 -8.10722 -7.43266 -6.51208 -3.93180 1.17464 1.50845 2.14692 2.28579 2.37026 2.70513 3.10806 3.13422 3.23401 3.30517 3.54825 3.71290 3.96206 4.10467 4.14959 4.20876 4.43093 4.50906 4.53983 4.66501 4.79136 4.84385 4.97887 5.14170 5.15263 5.28894 5.31385 5.47003 5.59947 5.62990 5.79130 5.79889 5.86856 5.94069 6.11476 6.28839 6.59943 6.80307 7.46885 7.75797 7.91263 8.43799 8.63452 9.04255 9.37902 9.86086 10.65736 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013726 B = 0.002577 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.378904 B =10862.223591 C =12574.595037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.303 4.303 8 H 0.107 0.893 9 N -0.545 5.545 10 C 0.450 3.550 11 O -0.586 6.586 12 C -0.125 4.125 13 S 0.076 5.924 14 C 0.149 3.851 15 N -0.294 5.294 16 N -0.282 5.282 17 C 0.205 3.795 18 C -0.087 4.087 19 C -0.148 4.148 20 C -0.159 4.159 21 N -0.462 5.462 22 C 0.123 3.877 23 C -0.163 4.163 24 C 0.528 3.472 25 N -0.853 5.853 26 O -0.540 6.540 27 H 0.274 0.726 28 H 0.397 0.603 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.404 0.596 41 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.491 -25.465 5.607 26.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.433 4.433 8 H 0.125 0.875 9 N -0.180 5.180 10 C 0.234 3.766 11 O -0.472 6.472 12 C -0.278 4.278 13 S 0.303 5.697 14 C -0.225 4.225 15 N -0.138 5.138 16 N -0.121 5.121 17 C -0.064 4.064 18 C -0.107 4.107 19 C -0.186 4.186 20 C -0.197 4.197 21 N -0.156 5.156 22 C 0.000 4.000 23 C -0.204 4.204 24 C 0.312 3.688 25 N -0.416 5.416 26 O -0.417 6.417 27 H 0.084 0.916 28 H 0.230 0.770 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.141 0.859 32 H 0.129 0.871 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.129 0.871 40 H 0.232 0.768 41 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 3.145 -24.710 4.824 25.372 hybrid contribution -0.222 0.274 0.482 0.597 sum 2.924 -24.435 5.306 25.175 Atomic orbital electron populations 1.69626 1.06025 1.28459 1.49272 1.25334 0.95674 0.99937 0.96767 0.85751 0.79718 0.80758 0.77839 1.19075 1.20577 1.20598 1.19800 0.93513 0.81812 1.48168 0.87520 1.41754 1.09507 1.04173 1.62584 1.18892 0.87812 0.83780 0.86103 1.90558 1.13215 1.86466 1.56962 1.23668 1.01226 0.94925 1.07955 1.86155 1.02356 0.89333 1.91814 1.27608 0.98206 0.89631 1.07029 1.74752 1.03177 1.15175 1.20676 1.73859 1.25392 0.94975 1.17880 1.23896 0.81274 0.95732 1.05468 1.20065 0.98531 0.85330 1.06819 1.23029 0.94049 1.02704 0.98791 1.23085 1.02647 1.01922 0.92092 1.46284 1.07942 1.04902 1.56470 1.21604 0.79826 1.01766 0.96818 1.22004 0.94908 1.04505 0.98942 1.20236 0.87486 0.77217 0.83904 1.43817 1.21609 1.67639 1.08568 1.90797 1.67159 1.52502 1.31250 0.91608 0.76962 0.87144 0.87172 0.85949 0.87093 0.87831 0.87883 0.88108 0.87172 0.87568 0.87747 0.87141 0.76763 0.76450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.02 13.05 55.50 0.72 -23.29 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 8 H 0.11 3.05 7.16 -52.49 -0.38 2.67 16 9 N -0.55 -13.72 5.29 -10.96 -0.06 -13.77 16 10 C 0.45 10.56 7.80 -10.99 -0.09 10.48 16 11 O -0.59 -15.49 15.44 5.54 0.09 -15.41 16 12 C -0.13 -2.34 5.72 36.01 0.21 -2.13 16 13 S 0.08 1.27 20.94 -107.50 -2.25 -0.98 16 14 C 0.15 2.34 8.07 -88.33 -0.71 1.63 16 15 N -0.29 -5.18 11.60 30.68 0.36 -4.82 16 16 N -0.28 -4.53 11.79 32.99 0.39 -4.14 16 17 C 0.21 2.60 7.59 -154.00 -1.17 1.43 16 18 C -0.09 -0.73 5.99 -91.77 -0.55 -1.28 16 19 C -0.15 -1.11 10.15 -26.73 -0.27 -1.38 16 20 C -0.16 -1.08 10.24 -26.73 -0.27 -1.35 16 21 N -0.46 -5.79 2.81 -113.54 -0.32 -6.11 16 22 C 0.12 1.19 5.18 -4.04 -0.02 1.17 16 23 C -0.16 -1.18 6.02 -27.88 -0.17 -1.35 16 24 C 0.53 4.25 8.10 -10.98 -0.09 4.16 16 25 N -0.85 -3.87 8.87 31.22 0.28 -3.59 16 26 O -0.54 -6.57 16.82 5.56 0.09 -6.47 16 27 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.40 9.59 7.90 -40.82 -0.32 9.27 16 29 H 0.11 1.97 8.14 -51.92 -0.42 1.54 16 30 H 0.11 1.92 8.14 -51.92 -0.42 1.50 16 31 H 0.12 0.79 7.53 -51.93 -0.39 0.40 16 32 H 0.11 1.04 7.92 -51.93 -0.41 0.63 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.11 1.20 7.82 -51.93 -0.41 0.79 16 37 H 0.11 0.87 7.39 -51.93 -0.38 0.48 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.40 0.76 8.83 -40.82 -0.36 0.40 16 41 H 0.40 1.54 8.93 -40.82 -0.36 1.18 16 LS Contribution 376.29 15.07 5.67 5.67 Total: -1.00 -35.58 376.29 -8.54 -44.12 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -5.11 Total: 9.67 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -3.37 Total: 3.50 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 1.37 Total: -55.73 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: 0.18 Total: -21.88 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.25 Total: -0.98 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.58 -8.54 -44.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652593290.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.485 kcal (2) G-P(sol) polarization free energy of solvation -35.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds