Wall clock time and date at job start Tue Mar 31 2020 22:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86795 * 120.00430 * 2 1 4 4 H 1.48491 * 109.47601 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47196 * 299.99977 * 3 2 1 6 6 H 1.48504 * 109.47065 * 59.99551 * 3 2 1 7 7 C 1.38953 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00111 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00066 * 359.97438 * 7 2 1 10 10 C 1.34769 * 120.00196 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99930 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00236 * 179.97438 * 10 9 7 13 13 S 1.80993 * 109.47461 * 180.02562 * 12 10 9 14 14 C 1.76192 * 100.00191 * 180.02562 * 13 12 10 15 15 N 1.31289 * 126.48472 * 0.02562 * 14 13 12 16 16 N 1.28522 * 109.85615 * 179.97438 * 15 14 13 17 17 C 1.30297 * 110.07886 * 359.72039 * 16 15 14 18 18 C 1.50701 * 126.34152 * 180.30825 * 17 16 15 19 19 C 1.52997 * 117.50091 * 8.78036 * 18 17 16 20 20 C 1.53003 * 60.00305 * 252.50937 * 19 18 17 21 21 N 1.36543 * 126.48656 * 180.02562 * 14 13 12 22 22 C 1.46500 * 127.13943 * 0.02562 * 21 14 13 23 23 C 1.52997 * 109.47473 * 90.02358 * 22 21 14 24 24 C 1.50701 * 109.47212 * 179.97438 * 23 22 21 25 25 N 1.34780 * 119.99795 * 179.97438 * 24 23 22 26 26 O 1.21280 * 119.99781 * 0.02562 * 24 23 22 27 27 H 0.97002 * 120.00068 * 0.02562 * 1 2 3 28 28 H 0.97008 * 119.99916 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.46550 * 60.00246 * 12 10 9 30 30 H 1.08996 * 109.47353 * 300.00559 * 12 10 9 31 31 H 1.09001 * 115.55062 * 154.48898 * 18 17 16 32 32 H 1.09005 * 117.49822 * 359.97438 * 19 18 17 33 33 H 1.09002 * 117.50163 * 145.02369 * 19 18 17 34 34 H 1.09001 * 117.50121 * 252.51378 * 20 19 18 35 35 H 1.09001 * 117.51970 * 107.47316 * 20 19 18 36 36 H 1.09002 * 109.47129 * 330.02101 * 22 21 14 37 37 H 1.08998 * 109.46845 * 210.02907 * 22 21 14 38 38 H 1.09002 * 109.47153 * 59.99757 * 23 22 21 39 39 H 1.09001 * 109.46832 * 299.99948 * 23 22 21 40 40 H 0.96995 * 120.00011 * 0.02562 * 25 24 23 41 41 H 0.96998 * 119.99539 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9971 -3.5579 0.0026 11 8 3.2101 -3.5579 0.0031 12 6 1.2436 -4.8630 0.0044 13 16 2.4197 -6.2387 0.0062 14 6 1.2996 -7.5988 0.0073 15 7 -0.0115 -7.5304 0.0063 16 7 -0.5104 -8.7148 0.0070 17 6 0.4437 -9.6022 0.0025 18 6 0.2709 -11.0992 -0.0049 19 6 -1.1424 -11.6463 -0.2146 20 6 -0.4872 -11.7287 1.1656 21 7 1.6309 -8.9235 0.0093 22 6 2.9784 -9.4982 0.0115 23 6 3.4458 -9.6971 1.4547 24 6 4.8317 -10.2889 1.4569 25 7 5.4503 -10.5519 2.6252 26 8 5.3908 -10.5276 0.4075 27 1 -0.4850 0.8401 -0.0004 28 1 0.3532 -2.3907 0.0016 29 1 0.6167 -4.9217 -0.8854 30 1 0.6172 -4.9197 0.8946 31 1 1.0987 -11.6659 -0.4313 32 1 -1.9475 -10.9233 -0.3468 33 1 -1.2448 -12.5730 -0.7792 34 1 -0.1584 -12.7096 1.5089 35 1 -0.8607 -11.0600 1.9412 36 1 3.6624 -8.8225 -0.5021 37 1 2.9641 -10.4597 -0.5016 38 1 2.7618 -10.3727 1.9683 39 1 3.4601 -8.7354 1.9677 40 1 5.0032 -10.3606 3.4644 41 1 6.3422 -10.9332 2.6265 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652593290.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:26 Heat of formation + Delta-G solvation = -2.443850 kcal Electronic energy + Delta-G solvation = -25943.255193 eV Core-core repulsion = 21985.451962 eV Total energy + Delta-G solvation = -3957.803231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.04107 -40.61402 -40.18151 -38.10397 -36.67846 -36.11220 -34.71360 -33.46255 -31.96158 -31.79112 -30.80520 -26.76862 -26.38267 -25.04720 -23.83579 -23.17567 -21.65604 -21.54778 -20.99367 -20.09347 -19.03653 -18.45360 -18.01139 -17.77062 -17.37416 -17.10786 -16.65051 -16.54131 -16.35064 -16.28043 -15.98323 -15.48870 -14.87279 -14.74700 -14.58898 -14.41104 -13.93249 -13.82347 -13.53684 -13.35571 -12.93053 -12.79825 -12.50958 -12.46167 -12.36957 -12.24219 -12.10975 -11.97318 -11.60043 -11.55166 -11.48107 -11.29628 -11.14165 -10.69173 -10.65349 -10.61861 -10.12818 -8.73257 -8.52936 -6.03461 -0.11854 0.46264 0.90832 1.33744 1.39005 1.42659 1.53694 1.57192 1.59217 1.85478 2.26985 2.57577 2.90860 2.99473 3.13085 3.19599 3.42375 3.49092 3.74173 3.91716 4.01828 4.06101 4.07091 4.10642 4.15626 4.24836 4.33639 4.37559 4.63286 4.73326 4.81300 4.86722 4.95834 5.16246 5.30321 5.36840 5.64722 5.85377 5.87546 6.37502 6.43694 7.00605 7.26760 7.38707 7.49962 7.90093 8.64321 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013726 B = 0.002577 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.378904 B =10862.223591 C =12574.595037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.336 4.336 8 H 0.087 0.913 9 N -0.555 5.555 10 C 0.453 3.547 11 O -0.617 6.617 12 C -0.117 4.117 13 S 0.081 5.919 14 C 0.138 3.862 15 N -0.325 5.325 16 N -0.321 5.321 17 C 0.224 3.776 18 C -0.101 4.101 19 C -0.150 4.150 20 C -0.140 4.140 21 N -0.453 5.453 22 C 0.117 3.883 23 C -0.153 4.153 24 C 0.529 3.471 25 N -0.834 5.834 26 O -0.586 6.586 27 H 0.281 0.719 28 H 0.399 0.601 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.151 0.849 32 H 0.086 0.914 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.107 0.893 40 H 0.419 0.581 41 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.711 -27.532 6.483 28.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.465 4.465 8 H 0.105 0.895 9 N -0.190 5.190 10 C 0.239 3.761 11 O -0.505 6.505 12 C -0.269 4.269 13 S 0.308 5.692 14 C -0.237 4.237 15 N -0.169 5.169 16 N -0.160 5.160 17 C -0.046 4.046 18 C -0.122 4.122 19 C -0.188 4.188 20 C -0.178 4.178 21 N -0.146 5.146 22 C -0.005 4.005 23 C -0.194 4.194 24 C 0.313 3.687 25 N -0.398 5.398 26 O -0.467 6.467 27 H 0.090 0.910 28 H 0.233 0.767 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.168 0.832 32 H 0.105 0.895 33 H 0.149 0.851 34 H 0.155 0.845 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.126 0.874 40 H 0.250 0.750 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 3.349 -26.798 5.751 27.612 hybrid contribution -0.307 0.747 0.242 0.843 sum 3.043 -26.050 5.993 26.903 Atomic orbital electron populations 1.69689 1.07050 1.29666 1.49143 1.26154 0.96547 1.02705 0.95658 0.84800 0.78129 0.76585 0.78401 1.19407 1.19568 1.19444 1.19791 0.92973 0.83348 1.50427 0.89518 1.41811 1.09587 1.04385 1.63250 1.19549 0.87626 0.84850 0.84104 1.90530 1.14832 1.87321 1.57816 1.23423 1.01251 0.93340 1.08905 1.86044 1.01743 0.88931 1.92478 1.27295 0.97617 0.90531 1.08278 1.74655 1.04131 1.16552 1.21521 1.73799 1.26767 0.95111 1.20294 1.24698 0.80467 0.97255 1.02186 1.20424 1.00108 0.82675 1.08958 1.23098 0.92559 1.03059 1.00034 1.23161 1.00872 1.02711 0.91033 1.46430 1.09046 1.03721 1.55441 1.21832 0.78004 1.01980 0.98677 1.21930 0.95096 1.04984 0.97413 1.20302 0.87552 0.76812 0.84007 1.43686 1.21690 1.66063 1.08332 1.90785 1.68174 1.54780 1.32958 0.90988 0.76659 0.86356 0.85993 0.83186 0.89534 0.85149 0.84547 0.89646 0.88724 0.85607 0.85136 0.87434 0.74976 0.75743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.30 13.05 21.66 0.28 -49.02 16 2 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 3 Si 1.00 42.28 29.55 68.60 2.03 44.30 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.34 -18.86 9.68 84.04 0.81 -18.05 16 8 H 0.09 5.13 7.16 -2.91 -0.02 5.11 16 9 N -0.55 -28.70 5.29 -306.99 -1.62 -30.32 16 10 C 0.45 21.81 7.80 87.66 0.68 22.49 16 11 O -0.62 -33.51 15.44 -3.07 -0.05 -33.56 16 12 C -0.12 -4.44 5.72 71.24 0.41 -4.03 16 13 S 0.08 2.74 20.94 -56.49 -1.18 1.56 16 14 C 0.14 4.33 8.07 179.55 1.45 5.78 16 15 N -0.32 -11.54 11.60 -56.85 -0.66 -12.20 16 16 N -0.32 -10.29 11.79 -49.53 -0.58 -10.87 16 17 C 0.22 5.37 7.59 137.63 1.04 6.42 16 18 C -0.10 -1.42 5.99 -11.54 -0.07 -1.49 16 19 C -0.15 -1.89 10.15 30.59 0.31 -1.58 16 20 C -0.14 -1.43 10.24 30.60 0.31 -1.12 16 21 N -0.45 -10.89 2.81 -513.13 -1.44 -12.34 16 22 C 0.12 2.10 5.18 86.38 0.45 2.54 16 23 C -0.15 -1.92 6.02 29.85 0.18 -1.74 16 24 C 0.53 7.59 8.10 87.66 0.71 8.30 16 25 N -0.83 -5.68 8.87 -173.53 -1.54 -7.22 16 26 O -0.59 -13.70 16.82 -3.03 -0.05 -13.76 16 27 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 28 H 0.40 19.85 7.90 -92.70 -0.73 19.12 16 29 H 0.12 4.30 8.14 -2.39 -0.02 4.28 16 30 H 0.12 4.32 8.14 -2.40 -0.02 4.30 16 31 H 0.15 1.30 7.53 -2.39 -0.02 1.29 16 32 H 0.09 1.56 7.92 -2.38 -0.02 1.54 16 33 H 0.13 0.94 8.14 -2.39 -0.02 0.93 16 34 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.09 2.03 7.82 -2.39 -0.02 2.01 16 37 H 0.13 1.76 7.39 -2.39 -0.02 1.75 16 38 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.11 1.46 8.14 -2.39 -0.02 1.45 16 40 H 0.42 0.42 8.83 -92.71 -0.82 -0.39 16 41 H 0.41 2.29 8.93 -92.71 -0.83 1.46 16 Total: -1.00 -79.13 376.29 0.68 -78.45 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: -1.26 Total: 27.49 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 6.76 Total: 17.47 kcal Atomic # 7 Polarization: -116.40 SS G_CDS: -5.57 Total: -121.97 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: -0.10 Total: -47.31 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -1.18 Total: 1.56 kcal Total: -79.13 0.68 -78.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652593290.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.010 kcal (2) G-P(sol) polarization free energy of solvation -79.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds