Wall clock time and date at job start Tue Mar 31 2020 22:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31242 * 124.05304 * 2 1 4 4 N 1.27334 * 120.03759 * 180.36771 * 3 2 1 5 5 S 1.56636 * 109.73977 * 359.69095 * 4 3 2 6 6 C 1.38236 * 124.05902 * 179.81181 * 2 1 3 7 7 C 1.47183 * 128.47532 * 359.97438 * 6 2 1 8 8 O 1.21625 * 119.99451 * 359.70121 * 7 6 2 9 9 N 1.34772 * 119.99989 * 179.70298 * 7 6 2 10 10 C 1.46502 * 119.99689 * 180.02562 * 9 7 6 11 11 H 1.09005 * 110.87361 * 37.39504 * 10 9 7 12 12 C 1.55138 * 110.99147 * 273.54321 * 10 9 7 13 13 C 1.54312 * 103.01912 * 206.25699 * 12 10 9 14 14 N 1.47442 * 107.23644 * 22.28235 * 13 12 10 15 15 C 1.46906 * 110.99804 * 123.25772 * 14 13 12 16 16 C 1.50699 * 109.47140 * 69.87738 * 15 14 13 17 17 O 1.21289 * 119.99678 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99518 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00058 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00085 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99807 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00409 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47138 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47229 * 119.99992 * 23 21 19 26 26 H 1.48497 * 109.47429 * 239.99972 * 23 21 19 27 27 C 1.47847 * 108.56565 * 0.99394 * 14 13 12 28 28 H 1.08998 * 109.46951 * 270.18625 * 1 2 3 29 29 H 1.09002 * 109.47480 * 30.18481 * 1 2 3 30 30 H 1.09001 * 109.47035 * 150.18620 * 1 2 3 31 31 H 0.97002 * 120.00430 * 359.97438 * 9 7 6 32 32 H 1.09002 * 110.70435 * 87.87121 * 12 10 9 33 33 H 1.09005 * 110.70635 * 324.64050 * 12 10 9 34 34 H 1.09006 * 109.89034 * 262.88012 * 13 12 10 35 35 H 1.09000 * 109.89146 * 141.69417 * 13 12 10 36 36 H 1.09004 * 109.47040 * 189.87676 * 15 14 13 37 37 H 1.09000 * 109.47033 * 309.87628 * 15 14 13 38 38 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 39 39 H 0.97002 * 120.00022 * 179.97438 * 22 21 19 40 40 H 1.09000 * 110.37862 * 94.72931 * 27 14 13 41 41 H 1.08997 * 110.37468 * 217.07427 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0874 0.0000 4 7 3.5121 0.9982 -0.0071 5 16 3.9366 -0.5095 -0.0068 6 6 2.2812 -1.1452 0.0038 7 6 1.8394 -2.5492 0.0089 8 8 0.6522 -2.8130 0.0158 9 7 2.7505 -3.5423 0.0060 10 6 2.3108 -4.9397 0.0105 11 1 1.4192 -5.0683 -0.6033 12 6 2.0657 -5.4406 1.4583 13 6 2.2925 -6.9625 1.3427 14 7 3.1298 -7.1902 0.1506 15 6 4.3556 -7.9207 0.5001 16 6 4.0070 -9.3398 0.8681 17 8 2.8513 -9.7068 0.8414 18 7 4.9796 -10.2012 1.2268 19 6 4.6625 -11.4924 1.5611 20 1 3.6334 -11.8192 1.5373 21 6 5.6651 -12.3807 1.9304 22 7 6.9174 -11.9831 1.9588 23 14 5.2331 -14.1398 2.3866 24 1 3.7651 -14.3340 2.2745 25 1 5.9274 -15.0748 1.4652 26 1 5.6635 -14.4093 3.7820 27 6 3.4485 -5.8810 -0.4578 28 1 -0.3633 0.0033 1.0276 29 1 -0.3634 0.8883 -0.5167 30 1 -0.3633 -0.8917 -0.5109 31 1 3.6974 -3.3319 0.0002 32 1 1.0444 -5.2258 1.7727 33 1 2.7838 -4.9951 2.1469 34 1 1.3359 -7.4722 1.2266 35 1 2.8052 -7.3297 2.2317 36 1 5.0332 -7.9227 -0.3537 37 1 4.8395 -7.4341 1.3469 38 1 5.9038 -9.9078 1.2478 39 1 7.6173 -12.6031 2.2170 40 1 4.4120 -5.5198 -0.0982 41 1 3.4532 -5.9588 -1.5450 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660956951.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:43 Heat of formation + Delta-G solvation = 13.820799 kcal Electronic energy + Delta-G solvation = -25985.263439 eV Core-core repulsion = 22028.165496 eV Total energy + Delta-G solvation = -3957.097943 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.45872 -40.27958 -38.96834 -37.56676 -34.82145 -33.86819 -33.74457 -31.48613 -31.01920 -29.34591 -28.28658 -27.41099 -26.48171 -24.29106 -23.24264 -21.37808 -21.19277 -20.66245 -19.17401 -18.95522 -18.00160 -17.85404 -16.75301 -16.54339 -16.06019 -15.67335 -15.36087 -15.05603 -14.60035 -14.54227 -14.23751 -13.95572 -13.56500 -13.52611 -13.41208 -13.38947 -13.15530 -12.87628 -12.40637 -12.03077 -11.97947 -11.79764 -11.55729 -11.51148 -11.31755 -11.07482 -10.84257 -10.70605 -10.49467 -10.35696 -10.34982 -10.24154 -10.20788 -9.54766 -9.49996 -8.51058 -8.01375 -7.96748 -6.43645 -3.84273 -0.77246 0.30170 0.96191 1.45312 2.43281 2.49392 3.14939 3.25770 3.32931 3.39165 3.87613 3.94828 4.06003 4.14548 4.28139 4.38598 4.57676 4.81925 4.92167 5.08042 5.16757 5.18102 5.21855 5.27962 5.28982 5.47779 5.64788 5.68528 5.71388 5.79953 5.86573 5.97387 6.05718 6.25223 6.39374 6.84556 7.11571 7.12800 7.16388 7.53837 7.57109 8.04566 8.59884 9.16750 9.52534 10.04340 10.74219 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.031294 B = 0.001877 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.529982 B =14912.312211 C =15544.345452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.105 3.895 3 N -0.250 5.250 4 N -0.250 5.250 5 S 0.416 5.584 6 C -0.296 4.296 7 C 0.605 3.395 8 O -0.508 6.508 9 N -0.712 5.712 10 C 0.137 3.863 11 H 0.111 0.889 12 C -0.155 4.155 13 C 0.058 3.942 14 N -0.501 5.501 15 C 0.041 3.959 16 C 0.443 3.557 17 O -0.575 6.575 18 N -0.566 5.566 19 C -0.297 4.297 20 H 0.104 0.896 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.037 3.963 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.399 0.601 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.391 0.609 39 H 0.271 0.729 40 H 0.051 0.949 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.942 23.828 -3.829 24.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.042 4.042 3 N -0.116 5.116 4 N -0.230 5.230 5 S 0.552 5.448 6 C -0.436 4.436 7 C 0.389 3.611 8 O -0.383 6.383 9 N -0.363 5.363 10 C 0.033 3.967 11 H 0.129 0.871 12 C -0.194 4.194 13 C -0.070 4.070 14 N -0.225 5.225 15 C -0.091 4.091 16 C 0.228 3.772 17 O -0.458 6.458 18 N -0.203 5.203 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.091 4.091 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.121 0.879 31 H 0.234 0.766 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.224 0.776 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.052 24.070 -4.158 24.760 hybrid contribution 0.399 -0.664 0.907 1.193 sum -3.653 23.405 -3.251 23.910 Atomic orbital electron populations 1.20568 0.83581 1.05175 1.04560 1.23005 1.00329 0.84954 0.95913 1.70643 0.96873 1.27956 1.16178 1.78909 1.09486 1.15532 1.19091 1.82574 1.09689 1.01714 1.50783 1.27754 0.98197 0.99958 1.17724 1.16388 0.85994 0.81833 0.76931 1.90844 1.15644 1.82920 1.48888 1.45812 1.09223 1.06224 1.75051 1.22250 0.98920 0.77796 0.97759 0.87093 1.23266 1.03080 0.97037 0.96045 1.22717 0.99618 0.92737 0.91924 1.63255 1.16449 1.15351 1.27430 1.22106 0.91603 0.94951 1.00436 1.19702 0.86520 0.86564 0.84375 1.90531 1.19526 1.78343 1.57438 1.41864 1.08542 1.10479 1.59435 1.19745 0.95517 0.85685 1.41707 0.87856 1.25259 0.94765 1.00419 0.97595 1.69619 0.99550 1.36614 1.48641 0.85805 0.78886 0.81744 0.77945 1.19206 1.20762 1.20805 1.23276 0.95977 0.88787 1.01100 0.89134 0.89735 0.87902 0.76647 0.89990 0.91349 0.89404 0.92205 0.89278 0.93194 0.77555 0.91956 0.93118 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 9.89 36.01 0.36 -0.20 16 2 C 0.11 0.94 7.00 -82.84 -0.58 0.36 16 3 N -0.25 -2.55 11.54 33.42 0.39 -2.16 16 4 N -0.25 -2.38 12.51 60.35 0.75 -1.62 16 5 S 0.42 2.67 23.05 -107.50 -2.48 0.20 16 6 C -0.30 -2.46 6.81 -35.95 -0.24 -2.70 16 7 C 0.61 5.72 7.80 -12.63 -0.10 5.62 16 8 O -0.51 -6.20 14.64 5.26 0.08 -6.13 16 9 N -0.71 -5.61 5.23 -52.88 -0.28 -5.89 16 10 C 0.14 1.37 3.31 -65.79 -0.22 1.15 16 11 H 0.11 1.26 7.73 -51.93 -0.40 0.85 16 12 C -0.15 -1.72 6.64 -24.91 -0.17 -1.88 16 13 C 0.06 0.85 5.65 -2.84 -0.02 0.84 16 14 N -0.50 -7.57 4.85 -232.68 -1.13 -8.70 16 15 C 0.04 0.67 5.03 -4.97 -0.03 0.64 16 16 C 0.44 10.09 7.43 -10.99 -0.08 10.01 16 17 O -0.58 -15.17 15.12 5.55 0.08 -15.08 16 18 N -0.57 -13.94 5.29 -10.96 -0.06 -14.00 16 19 C -0.30 -8.13 9.68 -14.93 -0.14 -8.28 16 20 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 21 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 22 N -0.90 -24.15 13.05 55.50 0.72 -23.42 16 23 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 27 C 0.04 0.39 6.31 -2.29 -0.01 0.38 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.10 0.81 6.48 -51.93 -0.34 0.47 16 31 H 0.40 2.13 7.94 -40.82 -0.32 1.81 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.06 0.96 7.31 -51.93 -0.38 0.58 16 36 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 37 H 0.05 0.73 7.96 -51.93 -0.41 0.32 16 38 H 0.39 9.17 7.90 -40.82 -0.32 8.85 16 39 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 40 H 0.05 0.44 7.67 -51.93 -0.40 0.04 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 362.56 15.07 5.46 5.46 Total: -1.00 -33.19 362.56 -7.84 -41.03 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -5.04 Total: 8.15 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -1.33 Total: 6.40 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: 0.40 Total: -55.80 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: 0.16 Total: -21.21 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -2.48 Total: 0.20 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.19 -7.84 -41.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660956951.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.852 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds