Wall clock time and date at job start Tue Mar 31 2020 22:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31242 * 124.05304 * 2 1 4 4 N 1.27334 * 120.03759 * 180.36771 * 3 2 1 5 5 S 1.56636 * 109.73977 * 359.69095 * 4 3 2 6 6 C 1.38236 * 124.05902 * 179.81181 * 2 1 3 7 7 C 1.47183 * 128.47532 * 359.97438 * 6 2 1 8 8 O 1.21625 * 119.99451 * 359.70121 * 7 6 2 9 9 N 1.34772 * 119.99989 * 179.70298 * 7 6 2 10 10 C 1.46502 * 119.99689 * 180.02562 * 9 7 6 11 11 H 1.09005 * 110.87361 * 37.39504 * 10 9 7 12 12 C 1.55138 * 110.99147 * 273.54321 * 10 9 7 13 13 C 1.54312 * 103.01912 * 206.25699 * 12 10 9 14 14 N 1.47442 * 107.23644 * 22.28235 * 13 12 10 15 15 C 1.46906 * 110.99804 * 123.25772 * 14 13 12 16 16 C 1.50699 * 109.47140 * 69.87738 * 15 14 13 17 17 O 1.21289 * 119.99678 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99518 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00058 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00085 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99807 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00409 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47138 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47229 * 119.99992 * 23 21 19 26 26 H 1.48497 * 109.47429 * 239.99972 * 23 21 19 27 27 C 1.47847 * 108.56565 * 0.99394 * 14 13 12 28 28 H 1.08998 * 109.46951 * 270.18625 * 1 2 3 29 29 H 1.09002 * 109.47480 * 30.18481 * 1 2 3 30 30 H 1.09001 * 109.47035 * 150.18620 * 1 2 3 31 31 H 0.97002 * 120.00430 * 359.97438 * 9 7 6 32 32 H 1.09002 * 110.70435 * 87.87121 * 12 10 9 33 33 H 1.09005 * 110.70635 * 324.64050 * 12 10 9 34 34 H 1.09006 * 109.89034 * 262.88012 * 13 12 10 35 35 H 1.09000 * 109.89146 * 141.69417 * 13 12 10 36 36 H 1.09004 * 109.47040 * 189.87676 * 15 14 13 37 37 H 1.09000 * 109.47033 * 309.87628 * 15 14 13 38 38 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 39 39 H 0.97002 * 120.00022 * 179.97438 * 22 21 19 40 40 H 1.09000 * 110.37862 * 94.72931 * 27 14 13 41 41 H 1.08997 * 110.37468 * 217.07427 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0874 0.0000 4 7 3.5121 0.9982 -0.0071 5 16 3.9366 -0.5095 -0.0068 6 6 2.2812 -1.1452 0.0038 7 6 1.8394 -2.5492 0.0089 8 8 0.6522 -2.8130 0.0158 9 7 2.7505 -3.5423 0.0060 10 6 2.3108 -4.9397 0.0105 11 1 1.4192 -5.0683 -0.6033 12 6 2.0657 -5.4406 1.4583 13 6 2.2925 -6.9625 1.3427 14 7 3.1298 -7.1902 0.1506 15 6 4.3556 -7.9207 0.5001 16 6 4.0070 -9.3398 0.8681 17 8 2.8513 -9.7068 0.8414 18 7 4.9796 -10.2012 1.2268 19 6 4.6625 -11.4924 1.5611 20 1 3.6334 -11.8192 1.5373 21 6 5.6651 -12.3807 1.9304 22 7 6.9174 -11.9831 1.9588 23 14 5.2331 -14.1398 2.3866 24 1 3.7651 -14.3340 2.2745 25 1 5.9274 -15.0748 1.4652 26 1 5.6635 -14.4093 3.7820 27 6 3.4485 -5.8810 -0.4578 28 1 -0.3633 0.0033 1.0276 29 1 -0.3634 0.8883 -0.5167 30 1 -0.3633 -0.8917 -0.5109 31 1 3.6974 -3.3319 0.0002 32 1 1.0444 -5.2258 1.7727 33 1 2.7838 -4.9951 2.1469 34 1 1.3359 -7.4722 1.2266 35 1 2.8052 -7.3297 2.2317 36 1 5.0332 -7.9227 -0.3537 37 1 4.8395 -7.4341 1.3469 38 1 5.9038 -9.9078 1.2478 39 1 7.6173 -12.6031 2.2170 40 1 4.4120 -5.5198 -0.0982 41 1 3.4532 -5.9588 -1.5450 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660956951.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:43 Heat of formation + Delta-G solvation = -13.222626 kcal Electronic energy + Delta-G solvation = -25986.436130 eV Core-core repulsion = 22028.165496 eV Total energy + Delta-G solvation = -3958.270634 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.11171 -41.15577 -40.28196 -39.00387 -36.03305 -35.52809 -34.38223 -33.27910 -32.28646 -30.17301 -29.18980 -28.09581 -27.84160 -25.98206 -23.99101 -22.43988 -22.05314 -21.52049 -20.80705 -19.84192 -19.57983 -18.70177 -17.70309 -17.58870 -17.22156 -16.82157 -16.51441 -16.28323 -15.86754 -15.66515 -15.51406 -15.18747 -14.71642 -14.63951 -14.42140 -14.12194 -13.95643 -13.75951 -13.55283 -13.50388 -13.27507 -12.97441 -12.77396 -12.58885 -12.47842 -12.39397 -12.33031 -12.10852 -11.76977 -11.53332 -11.47941 -11.19221 -10.98236 -10.81009 -10.31750 -10.26078 -9.97539 -9.21437 -8.44806 -5.92579 -1.40525 -0.28224 0.36533 0.79022 1.37350 1.42783 1.56307 1.69015 1.78139 2.09815 2.30489 2.76386 2.88355 3.22501 3.31798 3.43808 3.50632 3.63490 3.74699 4.04267 4.22107 4.26314 4.30479 4.34835 4.46731 4.56300 4.65772 4.67143 4.75663 4.86765 4.90740 4.99150 5.13597 5.19936 5.30800 5.43562 5.86897 6.02105 6.12057 6.22013 6.53972 6.64072 6.89492 7.16461 7.60568 8.17076 8.72745 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.031294 B = 0.001877 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.529982 B =14912.312211 C =15544.345452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.098 3.902 3 N -0.276 5.276 4 N -0.285 5.285 5 S 0.507 5.493 6 C -0.313 4.313 7 C 0.609 3.391 8 O -0.539 6.539 9 N -0.697 5.697 10 C 0.148 3.852 11 H 0.096 0.904 12 C -0.142 4.142 13 C 0.061 3.939 14 N -0.526 5.526 15 C 0.055 3.945 16 C 0.439 3.561 17 O -0.617 6.617 18 N -0.576 5.576 19 C -0.329 4.329 20 H 0.077 0.923 21 C -0.014 4.014 22 N -0.920 5.920 23 Si 0.990 3.010 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.272 1.272 27 C 0.042 3.958 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.415 0.585 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.042 0.958 36 H 0.116 0.884 37 H 0.076 0.924 38 H 0.397 0.603 39 H 0.277 0.723 40 H 0.083 0.917 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.162 24.918 -4.070 25.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 N -0.141 5.141 4 N -0.265 5.265 5 S 0.643 5.357 6 C -0.454 4.454 7 C 0.393 3.607 8 O -0.417 6.417 9 N -0.349 5.349 10 C 0.043 3.957 11 H 0.114 0.886 12 C -0.182 4.182 13 C -0.068 4.068 14 N -0.251 5.251 15 C -0.076 4.076 16 C 0.227 3.773 17 O -0.503 6.503 18 N -0.214 5.214 19 C -0.459 4.459 20 H 0.095 0.905 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.814 3.186 24 H -0.200 1.200 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.086 4.086 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.252 0.748 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.134 0.866 37 H 0.094 0.906 38 H 0.230 0.770 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.220 25.205 -4.407 25.683 hybrid contribution -0.122 -1.004 0.959 1.394 sum -2.342 24.200 -3.448 24.557 Atomic orbital electron populations 1.20584 0.82931 1.05241 1.04985 1.23250 1.01040 0.85034 0.95677 1.70701 0.97155 1.28716 1.17532 1.78642 1.09584 1.18110 1.20201 1.82161 1.06897 0.98991 1.47603 1.27685 0.99922 0.99214 1.18537 1.16476 0.85636 0.82329 0.76269 1.90839 1.17075 1.83455 1.50297 1.45577 1.09920 1.05016 1.74420 1.21958 0.98493 0.78750 0.96522 0.88552 1.23138 1.03342 0.94384 0.97314 1.22543 0.98014 0.94936 0.91259 1.63122 1.16192 1.18223 1.27601 1.21958 0.92584 0.90723 1.02370 1.20889 0.85486 0.88759 0.82186 1.90505 1.21356 1.79810 1.58643 1.41928 1.09177 1.10116 1.60189 1.19654 0.94730 0.87628 1.43886 0.90543 1.25983 0.94587 1.03763 0.96986 1.69669 1.00019 1.37873 1.48574 0.84912 0.78156 0.77338 0.78189 1.19974 1.19678 1.19679 1.23331 0.97360 0.86426 1.01463 0.88525 0.88613 0.88789 0.74770 0.90494 0.89591 0.92507 0.93975 0.86641 0.90648 0.76954 0.91387 0.89935 0.88050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 9.89 71.24 0.70 -0.36 16 2 C 0.10 1.66 7.00 42.65 0.30 1.96 16 3 N -0.28 -5.34 11.54 -48.19 -0.56 -5.90 16 4 N -0.28 -4.94 12.51 37.02 0.46 -4.48 16 5 S 0.51 5.07 23.05 -56.49 -1.30 3.77 16 6 C -0.31 -4.60 6.81 24.62 0.17 -4.43 16 7 C 0.61 10.38 7.80 86.59 0.68 11.06 16 8 O -0.54 -12.77 14.64 -4.11 -0.06 -12.83 16 9 N -0.70 -8.95 5.23 -439.48 -2.30 -11.24 16 10 C 0.15 2.63 3.31 46.38 0.15 2.79 16 11 H 0.10 2.08 7.73 -2.38 -0.02 2.06 16 12 C -0.14 -2.96 6.64 31.77 0.21 -2.75 16 13 C 0.06 1.79 5.65 86.64 0.49 2.28 16 14 N -0.53 -15.17 4.85 -890.07 -4.32 -19.49 16 15 C 0.05 1.70 5.03 85.56 0.43 2.13 16 16 C 0.44 20.14 7.43 87.66 0.65 20.79 16 17 O -0.62 -33.62 15.12 -3.06 -0.05 -33.67 16 18 N -0.58 -28.67 5.29 -306.99 -1.62 -30.30 16 19 C -0.33 -18.43 9.68 84.04 0.81 -17.62 16 20 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 21 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 22 N -0.92 -48.69 13.05 21.66 0.28 -48.41 16 23 Si 0.99 42.58 29.55 68.60 2.03 44.61 16 24 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 27 C 0.04 0.74 6.31 86.77 0.55 1.29 16 28 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.47 6.48 -2.39 -0.02 1.46 16 31 H 0.41 2.69 7.94 -92.71 -0.74 1.95 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.04 1.36 7.31 -2.39 -0.02 1.34 16 36 H 0.12 3.00 8.07 -2.38 -0.02 2.98 16 37 H 0.08 1.99 7.96 -2.39 -0.02 1.97 16 38 H 0.40 18.53 7.90 -92.71 -0.73 17.79 16 39 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 40 H 0.08 0.99 7.67 -2.39 -0.02 0.97 16 41 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -74.21 362.56 -2.18 -76.39 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: -0.36 Total: 24.68 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 5.61 Total: 16.87 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -8.05 Total: -119.82 kcal Atomic # 8 Polarization: -46.40 SS G_CDS: -0.11 Total: -46.50 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: 5.07 SS G_CDS: -1.30 Total: 3.77 kcal Total: -74.21 -2.18 -76.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660956951.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.170 kcal (2) G-P(sol) polarization free energy of solvation -74.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds