Wall clock time and date at job start Tue Mar 31 2020 22:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86805 * 119.99841 * 2 1 4 4 H 1.48500 * 109.46923 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47166 * 299.99990 * 3 2 1 6 6 H 1.48500 * 109.46952 * 60.00385 * 3 2 1 7 7 C 1.38802 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00009 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99818 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47000 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99955 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00169 * 179.97438 * 11 10 9 14 14 C 1.47471 * 125.62717 * 0.02852 * 13 11 10 15 15 C 1.54906 * 104.81210 * 204.04395 * 14 13 11 16 16 C 1.55156 * 101.61451 * 323.04512 * 15 14 13 17 17 H 1.09005 * 110.72052 * 277.11432 * 16 15 14 18 18 N 1.46903 * 110.71964 * 153.84660 * 16 15 14 19 19 C 1.46895 * 111.00277 * 154.99668 * 18 16 15 20 20 C 1.50704 * 109.47392 * 179.97438 * 19 18 16 21 21 C 1.38229 * 120.40597 * 269.72579 * 20 19 18 22 22 N 1.31846 * 120.81988 * 179.68028 * 21 20 19 23 23 C 1.31870 * 121.75004 * 0.62695 * 22 21 20 24 24 C 1.38422 * 120.72626 * 359.66366 * 23 22 21 25 25 F 1.35098 * 120.44550 * 179.97438 * 24 23 22 26 26 C 1.38591 * 120.40254 * 90.00104 * 20 19 18 27 27 C 1.47017 * 125.65312 * 179.97438 * 13 11 10 28 28 H 0.96999 * 120.00314 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47244 * 59.99951 * 10 9 7 30 30 H 1.09000 * 109.47048 * 299.99434 * 10 9 7 31 31 H 1.09008 * 110.34870 * 85.22524 * 14 13 11 32 32 H 1.09001 * 110.40581 * 322.89560 * 14 13 11 33 33 H 1.09002 * 111.00655 * 204.94912 * 15 14 13 34 34 H 1.09002 * 111.00329 * 81.13838 * 15 14 13 35 35 H 1.00898 * 110.99667 * 278.95585 * 18 16 15 36 36 H 1.09002 * 109.47366 * 300.00226 * 19 18 16 37 37 H 1.09006 * 109.46971 * 59.99689 * 19 18 16 38 38 H 1.08004 * 119.58971 * 0.02562 * 21 20 19 39 39 H 1.07991 * 119.63596 * 179.68039 * 23 22 21 40 40 H 1.08001 * 120.79648 * 359.97438 * 26 20 19 41 41 H 1.08998 * 109.88206 * 59.58080 * 27 13 11 42 42 H 1.09007 * 109.88177 * 298.41952 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0011 13 7 2.8443 -6.3431 0.0008 14 6 4.3157 -6.2442 0.0003 15 6 4.8023 -7.5822 -0.6102 16 6 3.7731 -8.5851 -0.0251 17 1 4.0591 -8.8875 0.9823 18 7 3.6332 -9.7563 -0.9008 19 6 3.1715 -10.9275 -0.1437 20 6 3.0394 -12.1064 -1.0732 21 6 1.8449 -12.3547 -1.7229 22 7 1.7222 -13.3800 -2.5426 23 6 2.7200 -14.2124 -2.7669 24 6 3.9448 -14.0315 -2.1478 25 9 4.9631 -14.8880 -2.3813 26 6 4.1125 -12.9581 -1.2826 27 6 2.4668 -7.7640 0.0018 28 1 -0.4850 0.8400 0.0004 29 1 3.1246 -3.7312 0.8905 30 1 3.1245 -3.7313 -0.8895 31 1 4.6885 -6.1341 1.0187 32 1 4.6400 -5.4057 -0.6160 33 1 5.8124 -7.8195 -0.2764 34 1 4.7485 -7.5574 -1.6986 35 1 3.0150 -9.5584 -1.6733 36 1 3.8924 -11.1610 0.6398 37 1 2.2030 -10.7101 0.3068 38 1 1.0032 -11.6974 -1.5613 39 1 2.5803 -15.0443 -3.4412 40 1 5.0565 -12.7907 -0.7853 41 1 1.8692 -7.9894 -0.8813 42 1 1.9011 -7.9966 0.9041 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662461607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:57 Heat of formation + Delta-G solvation = -37.441341 kcal Electronic energy + Delta-G solvation = -25231.975507 eV Core-core repulsion = 21252.734709 eV Total energy + Delta-G solvation = -3979.240798 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.45648 -40.71180 -39.94000 -37.84575 -35.73986 -33.12730 -32.45215 -31.79070 -30.54055 -29.69893 -27.89558 -25.81728 -25.42996 -24.27092 -23.33473 -22.38892 -21.18010 -19.41842 -18.02381 -17.79267 -17.70054 -17.31741 -16.81926 -16.66318 -16.27213 -15.76466 -15.13694 -14.98078 -14.82452 -14.48868 -14.21633 -14.10314 -13.91311 -13.75754 -13.63892 -13.37196 -12.98530 -12.78521 -12.68721 -12.55987 -12.45413 -11.90077 -11.84652 -11.73051 -11.11589 -11.08368 -11.03850 -10.77722 -10.33381 -10.12145 -9.83244 -9.54138 -9.45307 -9.09607 -8.97552 -8.56935 -8.25842 -6.53098 -6.23960 -3.94880 0.33982 0.54635 2.81893 3.00373 3.03839 3.20012 3.24127 3.29459 3.44581 3.55094 3.73420 3.91104 4.07057 4.16700 4.18915 4.27598 4.32651 4.35613 4.59216 4.70197 4.82870 4.98782 5.01899 5.06336 5.10045 5.11412 5.25949 5.31904 5.41954 5.45357 5.54849 5.56492 5.58335 5.70593 5.80470 5.90032 6.06592 6.10114 6.32618 6.44480 6.77008 7.27840 7.57280 7.59499 8.33192 8.49815 9.21455 10.83544 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032238 B = 0.001690 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.341772 B =16559.496850 C =17049.517768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.062 6.062 10 C -0.146 4.146 11 C 0.548 3.452 12 O -0.516 6.516 13 N -0.624 5.624 14 C 0.098 3.902 15 C -0.119 4.119 16 C 0.076 3.924 17 H 0.096 0.904 18 N -0.672 5.672 19 C 0.097 3.903 20 C -0.105 4.105 21 C 0.096 3.904 22 N -0.455 5.455 23 C 0.073 3.927 24 C 0.047 3.953 25 F -0.130 7.130 26 C -0.087 4.087 27 C 0.084 3.916 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.349 0.651 36 H 0.089 0.911 37 H 0.054 0.946 38 H 0.163 0.837 39 H 0.167 0.833 40 H 0.149 0.851 41 H 0.065 0.935 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.151 -27.373 -1.245 29.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.092 0.908 9 S 0.165 5.835 10 C -0.297 4.297 11 C 0.336 3.664 12 O -0.390 6.390 13 N -0.363 5.363 14 C -0.025 4.025 15 C -0.157 4.157 16 C -0.035 4.035 17 H 0.115 0.885 18 N -0.303 5.303 19 C -0.032 4.032 20 C -0.108 4.108 21 C -0.062 4.062 22 N -0.162 5.162 23 C -0.086 4.086 24 C 0.025 3.975 25 F -0.109 7.109 26 C -0.114 4.114 27 C -0.042 4.042 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.168 0.832 36 H 0.108 0.892 37 H 0.072 0.928 38 H 0.180 0.820 39 H 0.184 0.816 40 H 0.167 0.833 41 H 0.084 0.916 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.037 -27.838 -1.636 29.637 hybrid contribution 2.079 1.467 0.513 2.596 sum 12.116 -26.370 -1.122 29.043 Atomic orbital electron populations 1.70024 1.05962 1.27382 1.46881 1.24998 0.95032 0.99052 0.94511 0.86109 0.79581 0.81843 0.77922 1.19599 1.20549 1.20545 1.22897 0.94934 0.91553 1.58926 0.90846 1.85411 1.04948 0.96410 1.96715 1.23506 1.06496 0.94858 1.04829 1.20080 0.85669 0.85505 0.75114 1.90709 1.15013 1.85155 1.48106 1.48431 1.06791 1.05159 1.75871 1.22373 0.80209 0.98734 1.01217 1.22784 0.98771 0.92558 1.01604 1.22697 0.94237 0.89416 0.97110 0.88549 1.60665 1.55125 1.03342 1.11128 1.20919 1.00570 0.87507 0.94198 1.20718 0.93730 0.97142 0.99170 1.22872 0.96874 0.94475 0.91933 1.67779 1.30668 1.03332 1.14452 1.22965 0.87477 0.99273 0.98844 1.18844 0.86860 0.91310 1.00465 1.91538 1.57821 1.68311 1.93203 1.21577 1.00398 0.92670 0.96798 1.22617 0.97343 0.82107 1.02107 0.92209 0.89255 0.89245 0.91229 0.89997 0.89489 0.89993 0.83156 0.89226 0.92810 0.81966 0.81581 0.83290 0.91630 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.06 13.22 55.49 0.73 -25.32 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.27 29.55 -169.99 -5.02 16.24 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -15.16 9.50 30.94 0.29 -14.86 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -2.96 5.16 36.01 0.19 -2.78 16 11 C 0.55 10.39 7.87 -10.98 -0.09 10.31 16 12 O -0.52 -11.86 16.19 5.56 0.09 -11.77 16 13 N -0.62 -8.51 3.33 -170.49 -0.57 -9.08 16 14 C 0.10 0.96 6.69 -2.50 -0.02 0.94 16 15 C -0.12 -0.86 6.77 -24.58 -0.17 -1.02 16 16 C 0.08 0.53 3.28 -65.88 -0.22 0.32 16 17 H 0.10 0.58 7.83 -51.93 -0.41 0.18 16 18 N -0.67 -4.14 6.37 -106.05 -0.68 -4.82 16 19 C 0.10 0.49 5.70 -4.98 -0.03 0.46 16 20 C -0.11 -0.63 5.41 -104.49 -0.57 -1.19 16 21 C 0.10 0.67 10.86 -17.55 -0.19 0.48 16 22 N -0.46 -3.85 10.36 -13.20 -0.14 -3.99 16 23 C 0.07 0.53 11.17 -17.47 -0.20 0.33 16 24 C 0.05 0.33 7.35 -39.28 -0.29 0.04 16 25 F -0.13 -1.01 17.28 2.25 0.04 -0.97 16 26 C -0.09 -0.54 9.85 -39.21 -0.39 -0.93 16 27 C 0.08 0.89 6.59 -3.07 -0.02 0.87 16 28 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 30 H 0.09 1.68 7.85 -51.92 -0.41 1.27 16 31 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 32 H 0.08 0.81 7.48 -51.93 -0.39 0.42 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.35 2.29 8.04 -39.29 -0.32 1.97 16 36 H 0.09 0.38 8.04 -51.93 -0.42 -0.04 16 37 H 0.05 0.25 8.09 -51.93 -0.42 -0.17 16 38 H 0.16 0.86 8.06 -52.48 -0.42 0.44 16 39 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.07 0.73 7.49 -51.93 -0.39 0.34 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 375.70 15.07 5.66 5.66 Total: -1.00 -35.23 375.70 -9.54 -44.77 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -5.67 Total: -1.78 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -1.78 Total: -5.06 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: -0.65 Total: -43.21 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 9 Polarization: -1.01 SS G_CDS: 0.04 Total: -0.97 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.23 -9.54 -44.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662461607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.326 kcal (2) G-P(sol) polarization free energy of solvation -35.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds