Wall clock time and date at job start Tue Mar 31 2020 22:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86805 * 119.99841 * 2 1 4 4 H 1.48500 * 109.46923 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47166 * 299.99990 * 3 2 1 6 6 H 1.48500 * 109.46952 * 60.00385 * 3 2 1 7 7 C 1.38802 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00009 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99818 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47000 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99955 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00169 * 179.97438 * 11 10 9 14 14 C 1.47471 * 125.62717 * 0.02852 * 13 11 10 15 15 C 1.54906 * 104.81210 * 204.04395 * 14 13 11 16 16 C 1.55156 * 101.61451 * 323.04512 * 15 14 13 17 17 H 1.09005 * 110.72052 * 277.11432 * 16 15 14 18 18 N 1.46903 * 110.71964 * 153.84660 * 16 15 14 19 19 C 1.46895 * 111.00277 * 154.99668 * 18 16 15 20 20 C 1.50704 * 109.47392 * 179.97438 * 19 18 16 21 21 C 1.38229 * 120.40597 * 269.72579 * 20 19 18 22 22 N 1.31846 * 120.81988 * 179.68028 * 21 20 19 23 23 C 1.31870 * 121.75004 * 0.62695 * 22 21 20 24 24 C 1.38422 * 120.72626 * 359.66366 * 23 22 21 25 25 F 1.35098 * 120.44550 * 179.97438 * 24 23 22 26 26 C 1.38591 * 120.40254 * 90.00104 * 20 19 18 27 27 C 1.47017 * 125.65312 * 179.97438 * 13 11 10 28 28 H 0.96999 * 120.00314 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47244 * 59.99951 * 10 9 7 30 30 H 1.09000 * 109.47048 * 299.99434 * 10 9 7 31 31 H 1.09008 * 110.34870 * 85.22524 * 14 13 11 32 32 H 1.09001 * 110.40581 * 322.89560 * 14 13 11 33 33 H 1.09002 * 111.00655 * 204.94912 * 15 14 13 34 34 H 1.09002 * 111.00329 * 81.13838 * 15 14 13 35 35 H 1.00898 * 110.99667 * 278.95585 * 18 16 15 36 36 H 1.09002 * 109.47366 * 300.00226 * 19 18 16 37 37 H 1.09006 * 109.46971 * 59.99689 * 19 18 16 38 38 H 1.08004 * 119.58971 * 0.02562 * 21 20 19 39 39 H 1.07991 * 119.63596 * 179.68039 * 23 22 21 40 40 H 1.08001 * 120.79648 * 359.97438 * 26 20 19 41 41 H 1.08998 * 109.88206 * 59.58080 * 27 13 11 42 42 H 1.09007 * 109.88177 * 298.41952 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0011 13 7 2.8443 -6.3431 0.0008 14 6 4.3157 -6.2442 0.0003 15 6 4.8023 -7.5822 -0.6102 16 6 3.7731 -8.5851 -0.0251 17 1 4.0591 -8.8875 0.9823 18 7 3.6332 -9.7563 -0.9008 19 6 3.1715 -10.9275 -0.1437 20 6 3.0394 -12.1064 -1.0732 21 6 1.8449 -12.3547 -1.7229 22 7 1.7222 -13.3800 -2.5426 23 6 2.7200 -14.2124 -2.7669 24 6 3.9448 -14.0315 -2.1478 25 9 4.9631 -14.8880 -2.3813 26 6 4.1125 -12.9581 -1.2826 27 6 2.4668 -7.7640 0.0018 28 1 -0.4850 0.8400 0.0004 29 1 3.1246 -3.7312 0.8905 30 1 3.1245 -3.7313 -0.8895 31 1 4.6885 -6.1341 1.0187 32 1 4.6400 -5.4057 -0.6160 33 1 5.8124 -7.8195 -0.2764 34 1 4.7485 -7.5574 -1.6986 35 1 3.0150 -9.5584 -1.6733 36 1 3.8924 -11.1610 0.6398 37 1 2.2030 -10.7101 0.3068 38 1 1.0032 -11.6974 -1.5613 39 1 2.5803 -15.0443 -3.4412 40 1 5.0565 -12.7907 -0.7853 41 1 1.8692 -7.9894 -0.8813 42 1 1.9011 -7.9966 0.9041 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662461607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:56 Heat of formation + Delta-G solvation = -62.134822 kcal Electronic energy + Delta-G solvation = -25233.046297 eV Core-core repulsion = 21252.734709 eV Total energy + Delta-G solvation = -3980.311588 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.00826 -41.28493 -40.98444 -38.92472 -36.48595 -34.59802 -33.80817 -32.44614 -31.45490 -30.82273 -28.80934 -27.67313 -26.35627 -24.78080 -24.24287 -22.87927 -21.83483 -20.74790 -19.60024 -18.51960 -18.27723 -18.08866 -17.81000 -17.61704 -16.89623 -16.84781 -16.74179 -16.20196 -16.03079 -15.66724 -15.08830 -14.99952 -14.70597 -14.52599 -14.40817 -14.27972 -14.11817 -13.74793 -13.62759 -13.39603 -13.20767 -13.18681 -13.10914 -12.91858 -12.61630 -12.56572 -12.31416 -11.78227 -11.66318 -11.16804 -11.02215 -10.83386 -10.63986 -10.29222 -10.01314 -9.76508 -9.45012 -8.69452 -8.35813 -6.14646 -0.16475 0.04987 1.23195 1.41352 1.44620 1.53907 1.56748 2.06533 2.26237 2.51216 2.94996 2.98554 3.13726 3.26101 3.41678 3.51533 3.63605 3.68286 3.75998 3.88580 3.90623 4.06995 4.18623 4.22037 4.29037 4.37357 4.42467 4.43648 4.63586 4.66259 4.77522 4.81724 4.83126 4.86285 5.09357 5.11342 5.22705 5.34993 5.41084 5.57961 5.92291 6.18991 6.23155 6.35867 6.76709 7.05469 7.09207 8.73749 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032238 B = 0.001690 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.341772 B =16559.496850 C =17049.517768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.153 6.153 10 C -0.119 4.119 11 C 0.544 3.456 12 O -0.569 6.569 13 N -0.615 5.615 14 C 0.087 3.913 15 C -0.108 4.108 16 C 0.093 3.907 17 H 0.118 0.882 18 N -0.669 5.669 19 C 0.100 3.900 20 C -0.101 4.101 21 C 0.087 3.913 22 N -0.483 5.483 23 C 0.065 3.935 24 C 0.036 3.964 25 F -0.135 7.135 26 C -0.085 4.085 27 C 0.077 3.923 28 H 0.271 0.729 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.346 0.654 36 H 0.106 0.894 37 H 0.058 0.942 38 H 0.173 0.827 39 H 0.181 0.819 40 H 0.167 0.833 41 H 0.057 0.943 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.380 -27.859 -0.706 31.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.271 4.271 11 C 0.332 3.668 12 O -0.448 6.448 13 N -0.350 5.350 14 C -0.035 4.035 15 C -0.146 4.146 16 C -0.018 4.018 17 H 0.135 0.865 18 N -0.299 5.299 19 C -0.029 4.029 20 C -0.103 4.103 21 C -0.070 4.070 22 N -0.190 5.190 23 C -0.093 4.093 24 C 0.015 3.985 25 F -0.114 7.114 26 C -0.112 4.112 27 C -0.047 4.047 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.095 0.905 35 H 0.166 0.834 36 H 0.125 0.875 37 H 0.077 0.923 38 H 0.190 0.810 39 H 0.198 0.802 40 H 0.184 0.816 41 H 0.075 0.925 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.329 -28.378 -1.099 31.372 hybrid contribution 1.123 1.457 0.337 1.871 sum 14.453 -26.921 -0.762 30.564 Atomic orbital electron populations 1.70189 1.08014 1.28589 1.48008 1.26147 0.95976 1.03364 0.93686 0.84888 0.78654 0.76213 0.78085 1.17896 1.19959 1.19892 1.23227 0.95357 0.91829 1.58879 0.89824 1.85598 1.10606 0.99362 1.97038 1.23301 1.03375 0.93976 1.06399 1.19814 0.85456 0.86100 0.75430 1.90684 1.17214 1.85824 1.51113 1.48378 1.08219 1.05321 1.73098 1.22753 0.77422 1.00520 1.02767 1.22767 0.99962 0.90724 1.01160 1.22648 0.91751 0.89033 0.98377 0.86458 1.60705 1.55081 1.03201 1.10939 1.20979 1.01383 0.86508 0.94056 1.20760 0.93208 0.97370 0.98970 1.23139 0.97779 0.94320 0.91761 1.67782 1.31476 1.04245 1.15527 1.23212 0.87454 0.99539 0.99091 1.18943 0.86750 0.91738 1.01068 1.91523 1.57982 1.68578 1.93332 1.21810 1.01110 0.92060 0.96236 1.22913 0.99629 0.80686 1.01511 0.91970 0.87456 0.87559 0.89293 0.89962 0.86732 0.90542 0.83443 0.87547 0.92346 0.81040 0.80246 0.81559 0.92480 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.00 13.22 21.65 0.29 -55.72 16 2 C 0.01 0.74 5.49 84.86 0.47 1.20 16 3 Si 1.00 43.33 29.55 68.60 2.03 45.36 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 7 C -0.55 -31.09 9.50 67.95 0.65 -30.45 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 10 C -0.12 -4.80 5.16 71.24 0.37 -4.44 16 11 C 0.54 20.69 7.87 87.66 0.69 21.38 16 12 O -0.57 -27.14 16.19 -3.02 -0.05 -27.18 16 13 N -0.62 -15.89 3.33 -811.69 -2.70 -18.59 16 14 C 0.09 1.43 6.69 86.85 0.58 2.01 16 15 C -0.11 -1.15 6.77 31.98 0.22 -0.93 16 16 C 0.09 0.99 3.28 46.10 0.15 1.14 16 17 H 0.12 0.87 7.83 -2.38 -0.02 0.85 16 18 N -0.67 -6.28 6.37 -489.45 -3.12 -9.40 16 19 C 0.10 0.71 5.70 85.56 0.49 1.20 16 20 C -0.10 -1.01 5.41 -19.78 -0.11 -1.12 16 21 C 0.09 1.13 10.86 84.69 0.92 2.05 16 22 N -0.48 -7.98 10.36 -195.67 -2.03 -10.01 16 23 C 0.07 0.91 11.17 84.73 0.95 1.85 16 24 C 0.04 0.48 7.35 22.47 0.17 0.64 16 25 F -0.14 -1.96 17.28 44.97 0.78 -1.18 16 26 C -0.09 -0.89 9.85 22.51 0.22 -0.67 16 27 C 0.08 1.52 6.59 86.73 0.57 2.10 16 28 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 29 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 30 H 0.11 3.88 7.85 -2.40 -0.02 3.86 16 31 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.08 1.38 7.48 -2.39 -0.02 1.36 16 33 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.35 3.83 8.04 -89.70 -0.72 3.11 16 36 H 0.11 0.47 8.04 -2.39 -0.02 0.45 16 37 H 0.06 0.40 8.09 -2.38 -0.02 0.38 16 38 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 39 H 0.18 1.74 8.06 -2.92 -0.02 1.72 16 40 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.06 1.24 7.49 -2.39 -0.02 1.22 16 42 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -79.68 375.70 0.68 -79.00 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.33 Total: 11.48 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 6.32 Total: -4.02 kcal Atomic # 7 Polarization: -86.15 SS G_CDS: -7.56 Total: -93.71 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.05 Total: -27.18 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.78 Total: -1.18 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -79.68 0.68 -79.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662461607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.866 kcal (2) G-P(sol) polarization free energy of solvation -79.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds