Wall clock time and date at job start Tue Mar 31 2020 22:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 119.99726 * 2 1 4 4 H 1.48501 * 109.47244 * 269.99676 * 3 2 1 5 5 H 1.48496 * 109.47318 * 30.00022 * 3 2 1 6 6 H 1.48505 * 109.47062 * 150.00013 * 3 2 1 7 7 C 1.38951 * 120.00544 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00789 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99661 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00192 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99588 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00054 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.47197 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00196 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.47271 * 180.02562 * 14 13 12 16 16 H 1.08999 * 110.88539 * 51.11013 * 15 14 13 17 17 C 1.55156 * 111.00530 * 174.99686 * 15 14 13 18 18 C 1.54326 * 102.94326 * 153.57183 * 17 15 14 19 19 N 1.47022 * 107.26839 * 337.81019 * 18 17 15 20 20 C 1.34777 * 125.64657 * 178.90692 * 19 18 17 21 21 O 1.21573 * 119.99941 * 180.02562 * 20 19 18 22 22 C 1.47756 * 120.00007 * 0.29447 * 20 19 18 23 23 C 1.39352 * 124.11262 * 179.72701 * 22 20 19 24 24 N 1.30094 * 112.13935 * 179.97438 * 23 22 20 25 25 S 1.55924 * 108.75872 * 0.02562 * 24 23 22 26 26 N 1.31486 * 124.11397 * 359.42819 * 22 20 19 27 27 C 1.47427 * 108.70605 * 359.16243 * 19 18 17 28 28 H 0.96993 * 120.00420 * 0.02562 * 1 2 3 29 29 H 0.97007 * 120.00160 * 359.97438 * 9 7 2 30 30 H 1.09007 * 109.47501 * 60.00643 * 12 10 9 31 31 H 1.08996 * 109.47762 * 300.00252 * 12 10 9 32 32 H 1.00896 * 111.00089 * 56.04933 * 13 12 10 33 33 H 1.08999 * 109.47594 * 59.99322 * 14 13 12 34 34 H 1.09004 * 109.46515 * 299.99745 * 14 13 12 35 35 H 1.09001 * 110.72234 * 35.21017 * 17 15 14 36 36 H 1.09000 * 110.86842 * 272.00716 * 17 15 14 37 37 H 1.08999 * 109.88183 * 218.38986 * 18 17 15 38 38 H 1.09000 * 110.01007 * 97.29095 * 18 17 15 39 39 H 1.07998 * 123.93168 * 0.02562 * 23 22 20 40 40 H 1.09001 * 110.36425 * 142.74001 * 27 19 18 41 41 H 1.09000 * 110.36745 * 265.06477 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0010 12 6 1.2439 -4.8629 0.0011 13 7 2.1986 -5.9795 0.0016 14 6 1.4983 -7.2708 0.0016 15 6 2.5233 -8.4068 0.0028 16 1 3.2577 -8.2667 0.7959 17 6 1.8244 -9.7863 0.1291 18 6 2.8252 -10.7444 -0.5507 19 7 3.6623 -9.9356 -1.4489 20 6 4.6730 -10.3996 -2.2104 21 8 5.3005 -9.6361 -2.9184 22 6 5.0144 -11.8370 -2.1891 23 6 6.0366 -12.4087 -2.9443 24 7 6.1341 -13.6908 -2.7463 25 16 5.0472 -14.1231 -1.7153 26 7 4.3944 -12.7313 -1.4512 27 6 3.2171 -8.5322 -1.3742 28 1 -0.4850 0.8399 -0.0004 29 1 0.3534 -2.3907 0.0005 30 1 0.6170 -4.9209 -0.8887 31 1 0.6176 -4.9205 0.8913 32 1 2.8334 -5.9121 0.7829 33 1 0.8736 -7.3454 -0.8885 34 1 0.8732 -7.3451 0.8915 35 1 0.8713 -9.7857 -0.3998 36 1 1.6829 -10.0555 1.1758 37 1 2.2858 -11.4977 -1.1247 38 1 3.4486 -11.2277 0.2016 39 1 6.6741 -11.8521 -3.6151 40 1 4.0727 -7.8593 -1.4310 41 1 2.5092 -8.3156 -2.1742 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662602873.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:52 Heat of formation + Delta-G solvation = -0.030064 kcal Electronic energy + Delta-G solvation = -25721.523003 eV Core-core repulsion = 21763.824441 eV Total energy + Delta-G solvation = -3957.698562 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.55746 -39.82960 -38.35425 -37.78515 -35.44619 -34.12991 -33.81102 -31.99890 -31.18739 -29.57824 -28.18934 -26.97863 -25.24739 -24.04037 -22.82228 -22.40168 -20.70698 -19.89779 -19.80778 -19.18794 -17.88659 -17.54412 -16.78991 -16.32879 -16.11256 -15.95100 -15.48880 -15.29823 -14.67821 -14.47922 -14.37082 -13.86972 -13.70634 -13.44173 -13.10037 -13.00239 -12.88714 -12.60720 -12.29221 -11.87526 -11.75930 -11.68075 -11.64367 -11.54252 -11.47416 -11.12058 -11.04459 -10.98410 -10.86391 -10.38311 -10.38229 -10.20545 -9.66980 -9.49687 -8.88765 -8.46070 -8.06651 -7.94786 -6.40662 -3.81348 -0.02499 0.92999 1.13672 1.17183 2.60553 2.78649 3.19226 3.27729 3.33667 3.87903 3.92457 4.05318 4.18387 4.29070 4.35097 4.54466 4.67568 4.75699 5.01564 5.05741 5.12944 5.18219 5.24680 5.30793 5.45959 5.51693 5.61030 5.63570 5.74085 5.81168 5.85514 5.92954 5.98488 6.05277 6.15414 6.27245 7.13508 7.18522 7.56505 7.63354 7.73306 8.07643 8.62502 9.19218 9.55539 10.07080 10.77094 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030519 B = 0.001715 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.233438 B =16323.154361 C =17037.080182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.051 3.949 13 N -0.670 5.670 14 C 0.070 3.930 15 C -0.096 4.096 16 H 0.087 0.913 17 C -0.129 4.129 18 C 0.113 3.887 19 N -0.600 5.600 20 C 0.613 3.387 21 O -0.519 6.519 22 C 0.018 3.982 23 C 0.091 3.909 24 N -0.577 5.577 25 S 0.708 5.292 26 N -0.542 5.542 27 C 0.120 3.880 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.350 0.650 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.216 0.784 40 H 0.092 0.908 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.901 -30.062 -0.238 30.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.466 6.466 12 C -0.081 4.081 13 N -0.302 5.302 14 C -0.060 4.060 15 C -0.116 4.116 16 H 0.105 0.895 17 C -0.168 4.168 18 C -0.010 4.010 19 N -0.333 5.333 20 C 0.396 3.604 21 O -0.394 6.394 22 C -0.157 4.157 23 C -0.102 4.102 24 N -0.417 5.417 25 S 0.750 5.250 26 N -0.391 5.391 27 C -0.001 4.001 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.169 0.831 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.232 0.768 40 H 0.111 0.889 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.655 -31.408 -0.563 31.525 hybrid contribution -0.247 2.373 0.216 2.396 sum 2.409 -29.034 -0.347 29.136 Atomic orbital electron populations 1.69607 1.05929 1.28134 1.50705 1.25259 0.95639 0.99723 0.97353 0.85854 0.79209 0.80790 0.78417 1.20385 1.20966 1.19433 1.19709 0.93388 0.82242 1.47504 0.87912 1.41867 1.09187 1.04616 1.64433 1.19815 0.88403 0.84735 0.84475 1.90530 1.13752 1.87052 1.55292 1.21662 0.94313 0.90954 1.01200 1.60063 1.18880 0.99849 1.51431 1.21902 0.94759 0.88393 1.00911 1.22325 0.97832 0.93910 0.97526 0.89464 1.22749 0.98404 0.94108 1.01553 1.22078 0.92501 0.93545 0.92907 1.48292 1.31773 1.10788 1.42432 1.16328 0.79889 0.83843 0.80383 1.90887 1.51522 1.56088 1.40888 1.22507 0.97760 0.96617 0.98821 1.23811 0.97967 0.88171 1.00299 1.72278 1.28416 1.18300 1.22723 1.79128 1.10110 1.12276 1.23533 1.72686 1.31800 1.08096 1.26565 1.22321 1.00229 0.80479 0.97072 0.91900 0.77476 0.89573 0.93873 0.83086 0.90643 0.94789 0.90209 0.89783 0.90894 0.90790 0.76816 0.88949 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.29 5.29 -10.97 -0.06 -14.35 16 10 C 0.44 10.34 7.82 -10.99 -0.09 10.25 16 11 O -0.58 -15.84 15.78 5.55 0.09 -15.75 16 12 C 0.05 0.88 6.17 -4.98 -0.03 0.84 16 13 N -0.67 -10.19 6.07 -115.05 -0.70 -10.89 16 14 C 0.07 0.75 5.14 -3.82 -0.02 0.73 16 15 C -0.10 -0.91 3.18 -88.59 -0.28 -1.19 16 16 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 17 C -0.13 -0.90 6.42 -24.90 -0.16 -1.06 16 18 C 0.11 0.91 5.49 -3.06 -0.02 0.89 16 19 N -0.60 -6.53 3.33 -171.80 -0.57 -7.10 16 20 C 0.61 7.48 7.85 -12.37 -0.10 7.38 16 21 O -0.52 -7.92 17.06 5.30 0.09 -7.83 16 22 C 0.02 0.18 6.71 -83.71 -0.56 -0.39 16 23 C 0.09 0.79 11.22 -17.87 -0.20 0.59 16 24 N -0.58 -4.78 11.41 19.44 0.22 -4.56 16 25 S 0.71 4.18 23.69 -107.50 -2.55 1.64 16 26 N -0.54 -4.42 8.64 23.18 0.20 -4.22 16 27 C 0.12 1.39 6.32 -2.64 -0.02 1.37 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 30 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.35 5.53 8.43 -39.29 -0.33 5.20 16 33 H 0.08 0.78 7.96 -51.93 -0.41 0.37 16 34 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.50 8.04 -51.93 -0.42 0.08 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.56 7.69 -51.93 -0.40 0.16 16 38 H 0.07 0.59 7.56 -51.93 -0.39 0.20 16 39 H 0.22 1.54 8.06 -52.49 -0.42 1.11 16 40 H 0.09 1.30 8.04 -51.93 -0.42 0.88 16 41 H 0.08 0.88 7.90 -51.93 -0.41 0.47 16 LS Contribution 364.46 15.07 5.49 5.49 Total: -1.00 -33.97 364.46 -8.94 -42.92 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -5.15 Total: 10.95 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: -1.71 Total: 11.40 kcal Atomic # 7 Polarization: -64.78 SS G_CDS: -0.18 Total: -64.96 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: 0.18 Total: -23.58 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 4.18 SS G_CDS: -2.55 Total: 1.64 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.97 -8.94 -42.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662602873.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.885 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds