Wall clock time and date at job start Tue Mar 31 2020 22:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 119.99726 * 2 1 4 4 H 1.48501 * 109.47244 * 269.99676 * 3 2 1 5 5 H 1.48496 * 109.47318 * 30.00022 * 3 2 1 6 6 H 1.48505 * 109.47062 * 150.00013 * 3 2 1 7 7 C 1.38951 * 120.00544 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00789 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99661 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00192 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99588 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00054 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.47197 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00196 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.47271 * 180.02562 * 14 13 12 16 16 H 1.08999 * 110.88539 * 51.11013 * 15 14 13 17 17 C 1.55156 * 111.00530 * 174.99686 * 15 14 13 18 18 C 1.54326 * 102.94326 * 153.57183 * 17 15 14 19 19 N 1.47022 * 107.26839 * 337.81019 * 18 17 15 20 20 C 1.34777 * 125.64657 * 178.90692 * 19 18 17 21 21 O 1.21573 * 119.99941 * 180.02562 * 20 19 18 22 22 C 1.47756 * 120.00007 * 0.29447 * 20 19 18 23 23 C 1.39352 * 124.11262 * 179.72701 * 22 20 19 24 24 N 1.30094 * 112.13935 * 179.97438 * 23 22 20 25 25 S 1.55924 * 108.75872 * 0.02562 * 24 23 22 26 26 N 1.31486 * 124.11397 * 359.42819 * 22 20 19 27 27 C 1.47427 * 108.70605 * 359.16243 * 19 18 17 28 28 H 0.96993 * 120.00420 * 0.02562 * 1 2 3 29 29 H 0.97007 * 120.00160 * 359.97438 * 9 7 2 30 30 H 1.09007 * 109.47501 * 60.00643 * 12 10 9 31 31 H 1.08996 * 109.47762 * 300.00252 * 12 10 9 32 32 H 1.00896 * 111.00089 * 56.04933 * 13 12 10 33 33 H 1.08999 * 109.47594 * 59.99322 * 14 13 12 34 34 H 1.09004 * 109.46515 * 299.99745 * 14 13 12 35 35 H 1.09001 * 110.72234 * 35.21017 * 17 15 14 36 36 H 1.09000 * 110.86842 * 272.00716 * 17 15 14 37 37 H 1.08999 * 109.88183 * 218.38986 * 18 17 15 38 38 H 1.09000 * 110.01007 * 97.29095 * 18 17 15 39 39 H 1.07998 * 123.93168 * 0.02562 * 23 22 20 40 40 H 1.09001 * 110.36425 * 142.74001 * 27 19 18 41 41 H 1.09000 * 110.36745 * 265.06477 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0010 12 6 1.2439 -4.8629 0.0011 13 7 2.1986 -5.9795 0.0016 14 6 1.4983 -7.2708 0.0016 15 6 2.5233 -8.4068 0.0028 16 1 3.2577 -8.2667 0.7959 17 6 1.8244 -9.7863 0.1291 18 6 2.8252 -10.7444 -0.5507 19 7 3.6623 -9.9356 -1.4489 20 6 4.6730 -10.3996 -2.2104 21 8 5.3005 -9.6361 -2.9184 22 6 5.0144 -11.8370 -2.1891 23 6 6.0366 -12.4087 -2.9443 24 7 6.1341 -13.6908 -2.7463 25 16 5.0472 -14.1231 -1.7153 26 7 4.3944 -12.7313 -1.4512 27 6 3.2171 -8.5322 -1.3742 28 1 -0.4850 0.8399 -0.0004 29 1 0.3534 -2.3907 0.0005 30 1 0.6170 -4.9209 -0.8887 31 1 0.6176 -4.9205 0.8913 32 1 2.8334 -5.9121 0.7829 33 1 0.8736 -7.3454 -0.8885 34 1 0.8732 -7.3451 0.8915 35 1 0.8713 -9.7857 -0.3998 36 1 1.6829 -10.0555 1.1758 37 1 2.2858 -11.4977 -1.1247 38 1 3.4486 -11.2277 0.2016 39 1 6.6741 -11.8521 -3.6151 40 1 4.0727 -7.8593 -1.4310 41 1 2.5092 -8.3156 -2.1742 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662602873.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:51 Heat of formation + Delta-G solvation = -27.356909 kcal Electronic energy + Delta-G solvation = -25722.707984 eV Core-core repulsion = 21763.824441 eV Total energy + Delta-G solvation = -3958.883543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.25692 -40.64190 -40.10375 -38.79429 -36.66076 -35.82077 -34.76812 -33.29928 -32.85931 -30.41159 -29.09208 -28.18597 -26.63729 -25.34587 -23.76169 -23.13729 -21.59257 -20.93798 -20.66786 -20.40429 -19.88559 -18.35943 -17.91272 -17.40025 -17.09854 -16.94456 -16.70811 -16.36627 -16.04109 -15.95379 -15.55029 -15.23255 -15.04053 -14.53741 -14.21907 -13.99302 -13.86801 -13.58666 -13.47255 -13.23063 -13.06200 -12.81944 -12.69177 -12.49619 -12.41844 -12.29003 -12.24566 -12.12079 -11.92937 -11.77201 -11.56788 -11.50177 -11.26270 -10.33305 -10.28321 -10.00591 -9.73097 -9.25750 -8.46271 -5.94750 -0.67835 0.32032 0.40938 0.62081 1.38142 1.41841 1.54415 1.81135 1.93193 2.07067 2.29679 2.92049 3.21210 3.24674 3.45029 3.56490 3.64834 3.79080 3.94559 4.00102 4.32644 4.33814 4.41251 4.45048 4.47794 4.56850 4.62664 4.69997 4.80647 4.82975 4.94576 5.01108 5.09201 5.19778 5.33920 5.41405 5.41992 5.90913 6.13389 6.30990 6.44490 6.61415 6.84523 7.13688 7.57742 8.13636 8.71060 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030519 B = 0.001715 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.233438 B =16323.154361 C =17037.080182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.334 4.334 8 H 0.077 0.923 9 N -0.574 5.574 10 C 0.436 3.564 11 O -0.625 6.625 12 C 0.067 3.933 13 N -0.689 5.689 14 C 0.074 3.926 15 C -0.088 4.088 16 H 0.082 0.918 17 C -0.116 4.116 18 C 0.112 3.888 19 N -0.601 5.601 20 C 0.606 3.394 21 O -0.565 6.565 22 C -0.002 4.002 23 C 0.087 3.913 24 N -0.601 5.601 25 S 0.799 5.201 26 N -0.551 5.551 27 C 0.119 3.881 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.344 0.656 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.218 0.782 40 H 0.056 0.944 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.270 -32.125 0.775 32.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.464 4.464 8 H 0.095 0.905 9 N -0.211 5.211 10 C 0.223 3.777 11 O -0.512 6.512 12 C -0.065 4.065 13 N -0.322 5.322 14 C -0.055 4.055 15 C -0.108 4.108 16 H 0.101 0.899 17 C -0.154 4.154 18 C -0.010 4.010 19 N -0.333 5.333 20 C 0.390 3.610 21 O -0.444 6.444 22 C -0.174 4.174 23 C -0.105 4.105 24 N -0.443 5.443 25 S 0.840 5.160 26 N -0.403 5.403 27 C -0.003 4.003 28 H 0.087 0.913 29 H 0.231 0.769 30 H 0.122 0.878 31 H 0.088 0.912 32 H 0.162 0.838 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.126 0.874 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.235 0.765 40 H 0.075 0.925 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.977 -33.485 0.456 33.503 hybrid contribution 0.257 2.813 -0.064 2.825 sum 1.234 -30.672 0.393 30.700 Atomic orbital electron populations 1.69660 1.06736 1.29270 1.50357 1.26017 0.96567 1.02340 0.96325 0.84943 0.77890 0.76994 0.78595 1.19790 1.19382 1.19876 1.19654 0.92664 0.84154 1.49933 0.90507 1.41937 1.09344 1.04703 1.65141 1.21003 0.88285 0.86343 0.82044 1.90499 1.16046 1.88017 1.56620 1.21513 0.93925 0.87826 1.03247 1.60057 1.19306 1.01204 1.51591 1.21984 0.94939 0.86200 1.02338 1.22236 0.97612 0.95232 0.95714 0.89944 1.22753 0.98157 0.91395 1.03087 1.22255 0.92446 0.93687 0.92598 1.48420 1.31659 1.10846 1.42331 1.16719 0.79620 0.84792 0.79840 1.90846 1.53122 1.57569 1.42835 1.22051 0.99166 0.95575 1.00656 1.23784 0.97916 0.88377 1.00385 1.72150 1.29936 1.18124 1.24092 1.78789 1.07206 1.09595 1.20371 1.72456 1.32289 1.09057 1.26511 1.22241 0.98924 0.80580 0.98593 0.91297 0.76900 0.87771 0.91159 0.83776 0.89805 0.92412 0.88764 0.87431 0.90001 0.90350 0.76549 0.92528 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.68 13.05 21.66 0.28 -49.40 16 2 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 3 Si 0.99 43.42 29.55 68.60 2.03 45.44 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.33 -19.22 9.68 84.04 0.81 -18.40 16 8 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 9 N -0.57 -29.55 5.29 -306.99 -1.62 -31.17 16 10 C 0.44 20.75 7.82 87.65 0.69 21.44 16 11 O -0.63 -35.19 15.78 -3.06 -0.05 -35.24 16 12 C 0.07 2.20 6.17 85.55 0.53 2.73 16 13 N -0.69 -20.46 6.07 -517.92 -3.14 -23.60 16 14 C 0.07 1.42 5.14 86.30 0.44 1.87 16 15 C -0.09 -1.54 3.18 -9.48 -0.03 -1.57 16 16 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 17 C -0.12 -1.24 6.42 31.78 0.20 -1.03 16 18 C 0.11 1.59 5.49 86.73 0.48 2.06 16 19 N -0.60 -13.12 3.33 -815.71 -2.71 -15.84 16 20 C 0.61 15.41 7.85 86.76 0.68 16.09 16 21 O -0.56 -18.59 17.06 -3.95 -0.07 -18.65 16 22 C 0.00 -0.04 6.71 41.98 0.28 0.24 16 23 C 0.09 1.50 11.22 85.22 0.96 2.46 16 24 N -0.60 -9.17 11.41 -92.42 -1.05 -10.22 16 25 S 0.80 7.51 23.69 -56.49 -1.34 6.17 16 26 N -0.55 -8.04 8.64 -80.59 -0.70 -8.74 16 27 C 0.12 2.80 6.32 86.78 0.55 3.35 16 28 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 29 H 0.40 19.24 7.90 -92.70 -0.73 18.51 16 30 H 0.10 3.08 8.14 -2.38 -0.02 3.06 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.34 10.86 8.43 -89.70 -0.76 10.11 16 33 H 0.08 1.50 7.96 -2.39 -0.02 1.48 16 34 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.09 0.80 8.04 -2.39 -0.02 0.78 16 36 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.08 1.05 7.69 -2.39 -0.02 1.03 16 38 H 0.08 1.07 7.56 -2.39 -0.02 1.05 16 39 H 0.22 3.34 8.06 -2.91 -0.02 3.31 16 40 H 0.06 1.73 8.04 -2.39 -0.02 1.71 16 41 H 0.07 1.72 7.90 -2.39 -0.02 1.71 16 Total: -1.00 -76.44 364.46 -2.71 -79.15 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: -0.39 Total: 33.10 kcal Atomic # 6 Polarization: 22.94 SS G_CDS: 6.06 Total: 29.00 kcal Atomic # 7 Polarization: -130.02 SS G_CDS: -8.95 Total: -138.97 kcal Atomic # 8 Polarization: -53.77 SS G_CDS: -0.12 Total: -53.89 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: 7.51 SS G_CDS: -1.34 Total: 6.17 kcal Total: -76.44 -2.71 -79.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662602873.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.791 kcal (2) G-P(sol) polarization free energy of solvation -76.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds