Wall clock time and date at job start Tue Mar 31 2020 22:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 120.00089 * 2 1 4 4 H 1.48503 * 109.47179 * 240.00489 * 3 2 1 5 5 H 1.48501 * 109.46882 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47215 * 120.00408 * 3 2 1 7 7 C 1.38950 * 119.99837 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99857 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00066 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99924 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99964 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99876 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.46955 * 179.97438 * 12 10 9 14 14 C 1.46900 * 110.99639 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.46652 * 179.97438 * 14 13 12 16 16 H 1.09002 * 110.88909 * 305.70416 * 15 14 13 17 17 C 1.55157 * 111.03508 * 181.80020 * 15 14 13 18 18 C 1.54332 * 102.94104 * 206.41168 * 17 15 14 19 19 N 1.47019 * 107.26809 * 22.19421 * 18 17 15 20 20 C 1.34786 * 125.64350 * 181.02963 * 19 18 17 21 21 O 1.21563 * 119.99597 * 180.02562 * 20 19 18 22 22 C 1.47753 * 119.99846 * 0.03133 * 20 19 18 23 23 C 1.39351 * 124.11100 * 179.72910 * 22 20 19 24 24 N 1.30096 * 112.14038 * 179.85288 * 23 22 20 25 25 S 1.55915 * 108.75599 * 0.39853 * 24 23 22 26 26 N 1.31488 * 124.11943 * 0.03022 * 22 20 19 27 27 C 1.47418 * 108.70625 * 1.05636 * 19 18 17 28 28 H 0.97001 * 120.00044 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00188 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.46662 * 60.00322 * 12 10 9 31 31 H 1.08994 * 109.47312 * 299.99759 * 12 10 9 32 32 H 1.00895 * 110.99641 * 303.95751 * 13 12 10 33 33 H 1.08999 * 109.46814 * 60.00419 * 14 13 12 34 34 H 1.08996 * 109.47501 * 299.99910 * 14 13 12 35 35 H 1.09000 * 110.71794 * 324.77408 * 17 15 14 36 36 H 1.08996 * 110.72326 * 88.04394 * 17 15 14 37 37 H 1.08993 * 109.88239 * 262.77257 * 18 17 15 38 38 H 1.09003 * 110.01003 * 141.68082 * 18 17 15 39 39 H 1.07999 * 123.92846 * 0.02562 * 23 22 20 40 40 H 1.09003 * 110.36673 * 217.03608 * 27 19 18 41 41 H 1.09000 * 110.46196 * 94.76525 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1018 1.6965 -1.2126 5 1 1.2831 2.7464 0.0006 6 1 3.1020 1.6964 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2437 -4.8629 0.0000 13 7 2.1983 -5.9795 -0.0007 14 6 1.4980 -7.2708 0.0005 15 6 2.5229 -8.4068 -0.0010 16 1 3.2233 -8.2973 -0.8290 17 6 1.8212 -9.7899 -0.0453 18 6 2.8515 -10.7219 0.6270 19 7 3.7247 -9.8799 1.4577 20 6 4.7668 -10.3151 2.1935 21 8 5.4221 -9.5258 2.8456 22 6 5.1125 -11.7516 2.2074 23 6 6.1728 -12.2932 2.9315 24 7 6.2636 -13.5819 2.7782 25 16 5.1339 -14.0527 1.8122 26 7 4.4608 -12.6736 1.5336 27 6 3.2714 -8.4811 1.3532 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3906 0.0002 30 1 0.6168 -4.9208 -0.8897 31 1 0.6174 -4.9205 0.8902 32 1 2.8326 -5.9124 -0.7825 33 1 0.8722 -7.3455 -0.8888 34 1 0.8741 -7.3451 0.8911 35 1 0.8915 -9.7691 0.5231 36 1 1.6380 -10.0967 -1.0751 37 1 3.4425 -11.2314 -0.1340 38 1 2.3401 -11.4546 1.2512 39 1 6.8398 -11.7112 3.5502 40 1 4.1260 -7.8044 1.3519 41 1 2.5965 -8.2369 2.1736 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662602874.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:55 Heat of formation + Delta-G solvation = 0.112525 kcal Electronic energy + Delta-G solvation = -25738.876046 eV Core-core repulsion = 21781.183667 eV Total energy + Delta-G solvation = -3957.692379 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.55293 -39.82051 -38.35084 -37.77810 -35.44267 -34.12543 -33.80841 -31.99293 -31.18513 -29.56285 -28.18472 -26.96639 -25.25161 -24.03890 -22.82823 -22.38566 -20.69477 -19.88952 -19.80310 -19.18624 -17.88483 -17.54077 -16.77970 -16.32787 -16.10250 -15.95930 -15.48402 -15.29424 -14.67559 -14.46094 -14.37892 -13.86992 -13.70193 -13.44288 -13.09363 -13.00215 -12.87873 -12.60264 -12.28584 -11.86540 -11.74576 -11.67827 -11.63704 -11.54410 -11.46993 -11.10435 -11.04561 -10.96807 -10.86280 -10.42866 -10.37619 -10.19801 -9.66571 -9.48562 -8.87912 -8.45873 -8.06546 -7.94600 -6.40362 -3.81083 -0.02097 0.93394 1.14077 1.17631 2.61365 2.79339 3.21659 3.27095 3.31809 3.88069 3.92715 4.05375 4.18875 4.29204 4.35651 4.55405 4.67965 4.76178 5.01886 5.06174 5.13120 5.18309 5.24707 5.30899 5.46581 5.51792 5.61470 5.63753 5.74921 5.81540 5.85952 5.94110 5.98928 6.05757 6.16148 6.27374 7.14210 7.18643 7.56532 7.63433 7.74105 8.07605 8.62773 9.19344 9.55711 10.07340 10.77297 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029944 B = 0.001728 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.867172 B =16202.861142 C =16951.192014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.051 3.949 13 N -0.670 5.670 14 C 0.070 3.930 15 C -0.097 4.097 16 H 0.087 0.913 17 C -0.129 4.129 18 C 0.113 3.887 19 N -0.600 5.600 20 C 0.613 3.387 21 O -0.519 6.519 22 C 0.018 3.982 23 C 0.091 3.909 24 N -0.577 5.577 25 S 0.707 5.293 26 N -0.542 5.542 27 C 0.121 3.879 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.350 0.650 33 H 0.034 0.966 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.216 0.784 40 H 0.092 0.908 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.965 -29.979 0.483 30.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.225 3.775 11 O -0.466 6.466 12 C -0.081 4.081 13 N -0.302 5.302 14 C -0.060 4.060 15 C -0.116 4.116 16 H 0.105 0.895 17 C -0.168 4.168 18 C -0.010 4.010 19 N -0.333 5.333 20 C 0.395 3.605 21 O -0.394 6.394 22 C -0.157 4.157 23 C -0.103 4.103 24 N -0.417 5.417 25 S 0.749 5.251 26 N -0.392 5.392 27 C -0.001 4.001 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.169 0.831 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.232 0.768 40 H 0.110 0.890 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.702 -31.333 0.873 31.461 hybrid contribution -0.216 2.392 -0.296 2.420 sum 2.486 -28.941 0.577 29.053 Atomic orbital electron populations 1.69604 1.05923 1.28234 1.50624 1.25260 0.95641 0.99718 0.97333 0.85914 0.78751 0.80442 0.79088 1.19937 1.21002 1.19867 1.19658 0.93362 0.82259 1.47628 0.87968 1.41856 1.09181 1.04606 1.64425 1.19818 0.88405 0.84734 0.84497 1.90531 1.13749 1.87049 1.55302 1.21662 0.94308 0.90955 1.01195 1.60064 1.18913 0.99849 1.51388 1.21901 0.94760 0.88405 1.00907 1.22366 0.97552 0.93910 0.97784 0.89503 1.22749 0.98182 0.94271 1.01597 1.22076 0.91684 0.93104 0.94161 1.48294 1.29107 1.10395 1.45512 1.16327 0.80108 0.84012 0.80009 1.90885 1.51178 1.54349 1.42942 1.22509 0.96780 0.96291 1.00118 1.23812 0.98057 0.88452 0.99932 1.72277 1.28793 1.17437 1.23218 1.79121 1.07354 1.12804 1.25774 1.72685 1.32547 1.07661 1.26264 1.22344 0.99932 0.80653 0.97122 0.91850 0.77475 0.93880 0.89575 0.83086 0.94802 0.90653 0.90189 0.89799 0.90829 0.90877 0.76816 0.88955 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.57 13.05 55.50 0.72 -23.84 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.40 9.68 -14.94 -0.14 -8.54 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 10 C 0.44 10.34 7.82 -10.98 -0.09 10.25 16 11 O -0.58 -15.85 15.78 5.55 0.09 -15.76 16 12 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 13 N -0.67 -10.19 6.01 -115.05 -0.69 -10.88 16 14 C 0.07 0.75 5.14 -3.82 -0.02 0.73 16 15 C -0.10 -0.91 3.21 -88.47 -0.28 -1.20 16 16 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 17 C -0.13 -0.90 6.42 -24.89 -0.16 -1.06 16 18 C 0.11 0.91 5.49 -3.06 -0.02 0.90 16 19 N -0.60 -6.57 3.33 -171.67 -0.57 -7.14 16 20 C 0.61 7.52 7.85 -12.37 -0.10 7.42 16 21 O -0.52 -7.96 17.06 5.31 0.09 -7.87 16 22 C 0.02 0.18 6.71 -83.71 -0.56 -0.38 16 23 C 0.09 0.80 11.22 -17.87 -0.20 0.59 16 24 N -0.58 -4.80 11.41 19.42 0.22 -4.58 16 25 S 0.71 4.20 23.69 -107.50 -2.55 1.66 16 26 N -0.54 -4.44 8.64 23.17 0.20 -4.24 16 27 C 0.12 1.40 6.27 -2.53 -0.02 1.39 16 28 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.35 5.54 8.43 -39.29 -0.33 5.21 16 33 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 35 H 0.08 0.50 8.04 -51.93 -0.42 0.09 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.59 7.57 -51.93 -0.39 0.19 16 38 H 0.07 0.57 7.68 -51.93 -0.40 0.17 16 39 H 0.22 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.09 1.31 8.04 -51.93 -0.42 0.89 16 41 H 0.08 0.91 7.96 -51.93 -0.41 0.49 16 LS Contribution 364.50 15.07 5.49 5.49 Total: -1.00 -33.95 364.50 -8.94 -42.89 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -5.16 Total: 11.01 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: -1.71 Total: 11.45 kcal Atomic # 7 Polarization: -64.86 SS G_CDS: -0.17 Total: -65.04 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: 0.18 Total: -23.63 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 4.20 SS G_CDS: -2.55 Total: 1.66 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.95 -8.94 -42.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662602874.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.007 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds