Wall clock time and date at job start Tue Mar 31 2020 22:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 120.00089 * 2 1 4 4 H 1.48503 * 109.47179 * 240.00489 * 3 2 1 5 5 H 1.48501 * 109.46882 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47215 * 120.00408 * 3 2 1 7 7 C 1.38950 * 119.99837 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99857 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00066 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99924 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99964 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99876 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.46955 * 179.97438 * 12 10 9 14 14 C 1.46900 * 110.99639 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.46652 * 179.97438 * 14 13 12 16 16 H 1.09002 * 110.88909 * 305.70416 * 15 14 13 17 17 C 1.55157 * 111.03508 * 181.80020 * 15 14 13 18 18 C 1.54332 * 102.94104 * 206.41168 * 17 15 14 19 19 N 1.47019 * 107.26809 * 22.19421 * 18 17 15 20 20 C 1.34786 * 125.64350 * 181.02963 * 19 18 17 21 21 O 1.21563 * 119.99597 * 180.02562 * 20 19 18 22 22 C 1.47753 * 119.99846 * 0.03133 * 20 19 18 23 23 C 1.39351 * 124.11100 * 179.72910 * 22 20 19 24 24 N 1.30096 * 112.14038 * 179.85288 * 23 22 20 25 25 S 1.55915 * 108.75599 * 0.39853 * 24 23 22 26 26 N 1.31488 * 124.11943 * 0.03022 * 22 20 19 27 27 C 1.47418 * 108.70625 * 1.05636 * 19 18 17 28 28 H 0.97001 * 120.00044 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00188 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.46662 * 60.00322 * 12 10 9 31 31 H 1.08994 * 109.47312 * 299.99759 * 12 10 9 32 32 H 1.00895 * 110.99641 * 303.95751 * 13 12 10 33 33 H 1.08999 * 109.46814 * 60.00419 * 14 13 12 34 34 H 1.08996 * 109.47501 * 299.99910 * 14 13 12 35 35 H 1.09000 * 110.71794 * 324.77408 * 17 15 14 36 36 H 1.08996 * 110.72326 * 88.04394 * 17 15 14 37 37 H 1.08993 * 109.88239 * 262.77257 * 18 17 15 38 38 H 1.09003 * 110.01003 * 141.68082 * 18 17 15 39 39 H 1.07999 * 123.92846 * 0.02562 * 23 22 20 40 40 H 1.09003 * 110.36673 * 217.03608 * 27 19 18 41 41 H 1.09000 * 110.46196 * 94.76525 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1018 1.6965 -1.2126 5 1 1.2831 2.7464 0.0006 6 1 3.1020 1.6964 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2437 -4.8629 0.0000 13 7 2.1983 -5.9795 -0.0007 14 6 1.4980 -7.2708 0.0005 15 6 2.5229 -8.4068 -0.0010 16 1 3.2233 -8.2973 -0.8290 17 6 1.8212 -9.7899 -0.0453 18 6 2.8515 -10.7219 0.6270 19 7 3.7247 -9.8799 1.4577 20 6 4.7668 -10.3151 2.1935 21 8 5.4221 -9.5258 2.8456 22 6 5.1125 -11.7516 2.2074 23 6 6.1728 -12.2932 2.9315 24 7 6.2636 -13.5819 2.7782 25 16 5.1339 -14.0527 1.8122 26 7 4.4608 -12.6736 1.5336 27 6 3.2714 -8.4811 1.3532 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3906 0.0002 30 1 0.6168 -4.9208 -0.8897 31 1 0.6174 -4.9205 0.8902 32 1 2.8326 -5.9124 -0.7825 33 1 0.8722 -7.3455 -0.8888 34 1 0.8741 -7.3451 0.8911 35 1 0.8915 -9.7691 0.5231 36 1 1.6380 -10.0967 -1.0751 37 1 3.4425 -11.2314 -0.1340 38 1 2.3401 -11.4546 1.2512 39 1 6.8398 -11.7112 3.5502 40 1 4.1260 -7.8044 1.3519 41 1 2.5965 -8.2369 2.1736 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662602874.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:54 Heat of formation + Delta-G solvation = -27.185428 kcal Electronic energy + Delta-G solvation = -25740.059774 eV Core-core repulsion = 21781.183667 eV Total energy + Delta-G solvation = -3958.876107 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.25662 -40.63799 -40.10163 -38.79172 -36.65870 -35.81923 -34.76680 -33.29735 -32.85608 -30.40289 -29.08756 -28.17859 -26.63770 -25.35275 -23.76636 -23.12652 -21.58173 -20.93949 -20.66283 -20.40386 -19.88406 -18.36093 -17.90610 -17.39731 -17.10516 -16.94275 -16.70800 -16.36274 -16.04019 -15.95450 -15.55288 -15.22588 -15.04092 -14.53999 -14.22004 -13.99131 -13.86050 -13.58781 -13.46934 -13.23191 -13.06018 -12.81686 -12.66480 -12.49643 -12.42998 -12.29292 -12.24172 -12.12212 -11.92509 -11.77479 -11.56963 -11.49560 -11.26198 -10.33148 -10.28289 -10.00596 -9.72895 -9.25747 -8.46000 -5.94545 -0.67815 0.32045 0.40910 0.62153 1.40022 1.41835 1.52660 1.81422 1.93308 2.07260 2.29793 2.91772 3.21418 3.24907 3.45057 3.56409 3.65030 3.80069 3.94516 4.00057 4.32907 4.34083 4.41198 4.45007 4.47586 4.56888 4.62759 4.70027 4.80681 4.83457 4.95325 5.01458 5.09310 5.19940 5.34007 5.41309 5.42199 5.90846 6.13321 6.31276 6.44426 6.61580 6.84726 7.13709 7.57842 8.13778 8.71063 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029944 B = 0.001728 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.867172 B =16202.861142 C =16951.192014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.335 4.335 8 H 0.077 0.923 9 N -0.574 5.574 10 C 0.435 3.565 11 O -0.625 6.625 12 C 0.067 3.933 13 N -0.689 5.689 14 C 0.074 3.926 15 C -0.088 4.088 16 H 0.083 0.917 17 C -0.115 4.115 18 C 0.112 3.888 19 N -0.601 5.601 20 C 0.606 3.394 21 O -0.565 6.565 22 C -0.002 4.002 23 C 0.087 3.913 24 N -0.601 5.601 25 S 0.800 5.200 26 N -0.551 5.551 27 C 0.119 3.881 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.344 0.656 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.218 0.782 40 H 0.056 0.944 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.318 -32.101 -0.481 32.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.465 4.465 8 H 0.095 0.905 9 N -0.211 5.211 10 C 0.223 3.777 11 O -0.512 6.512 12 C -0.065 4.065 13 N -0.321 5.321 14 C -0.055 4.055 15 C -0.108 4.108 16 H 0.101 0.899 17 C -0.154 4.154 18 C -0.010 4.010 19 N -0.333 5.333 20 C 0.390 3.610 21 O -0.444 6.444 22 C -0.174 4.174 23 C -0.105 4.105 24 N -0.443 5.443 25 S 0.841 5.159 26 N -0.403 5.403 27 C -0.003 4.003 28 H 0.087 0.913 29 H 0.231 0.769 30 H 0.088 0.912 31 H 0.122 0.878 32 H 0.162 0.838 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.234 0.766 40 H 0.074 0.926 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.008 -33.471 -0.099 33.486 hybrid contribution 0.292 2.846 -0.026 2.861 sum 1.300 -30.625 -0.124 30.653 Atomic orbital electron populations 1.69660 1.06732 1.29330 1.50281 1.26020 0.96572 1.02340 0.96306 0.85005 0.77780 0.76760 0.78883 1.19693 1.19365 1.19936 1.19619 0.92672 0.84166 1.50036 0.90502 1.41928 1.09339 1.04696 1.65134 1.21008 0.88288 0.86345 0.82063 1.90500 1.16044 1.88015 1.56628 1.21513 0.93919 0.87825 1.03242 1.60058 1.19335 1.01208 1.51540 1.21984 0.94940 0.86208 1.02339 1.22281 0.97287 0.95250 0.95972 0.89870 1.22755 0.97850 0.91604 1.03162 1.22256 0.91572 0.93160 0.93999 1.48423 1.29058 1.10500 1.45293 1.16722 0.79865 0.84956 0.79447 1.90844 1.52757 1.55866 1.44918 1.22047 0.98095 0.95235 1.02066 1.23782 0.98005 0.88681 1.00006 1.72148 1.30379 1.17252 1.24533 1.78780 1.04507 1.10116 1.22507 1.72452 1.33061 1.08558 1.26242 1.22259 0.98677 0.80753 0.98591 0.91294 0.76901 0.91172 0.87768 0.83792 0.92435 0.89789 0.88785 0.87387 0.90343 0.90010 0.76566 0.92570 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.70 13.05 21.66 0.28 -49.41 16 2 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 3 Si 0.99 43.42 29.55 68.60 2.03 45.45 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.34 -19.27 9.68 84.04 0.81 -18.46 16 8 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 9 N -0.57 -29.56 5.29 -306.98 -1.62 -31.18 16 10 C 0.44 20.75 7.82 87.66 0.69 21.44 16 11 O -0.63 -35.21 15.78 -3.06 -0.05 -35.26 16 12 C 0.07 2.21 6.17 85.56 0.53 2.74 16 13 N -0.69 -20.47 6.01 -517.92 -3.11 -23.58 16 14 C 0.07 1.42 5.14 86.30 0.44 1.86 16 15 C -0.09 -1.54 3.21 -9.40 -0.03 -1.57 16 16 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 17 C -0.12 -1.24 6.42 31.79 0.20 -1.03 16 18 C 0.11 1.59 5.49 86.73 0.48 2.07 16 19 N -0.60 -13.22 3.33 -815.30 -2.71 -15.93 16 20 C 0.61 15.51 7.85 86.76 0.68 16.19 16 21 O -0.57 -18.73 17.06 -3.91 -0.07 -18.80 16 22 C 0.00 -0.04 6.71 41.98 0.28 0.24 16 23 C 0.09 1.51 11.22 85.22 0.96 2.46 16 24 N -0.60 -9.21 11.41 -92.46 -1.05 -10.27 16 25 S 0.80 7.55 23.69 -56.49 -1.34 6.21 16 26 N -0.55 -8.08 8.64 -80.61 -0.70 -8.77 16 27 C 0.12 2.84 6.27 86.86 0.54 3.39 16 28 H 0.28 14.08 8.31 -92.71 -0.77 13.30 16 29 H 0.40 19.26 7.90 -92.71 -0.73 18.52 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.34 10.88 8.43 -89.70 -0.76 10.12 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 1.50 8.04 -2.39 -0.02 1.48 16 35 H 0.09 0.81 8.04 -2.39 -0.02 0.79 16 36 H 0.11 0.72 8.14 -2.39 -0.02 0.71 16 37 H 0.08 1.06 7.57 -2.39 -0.02 1.05 16 38 H 0.08 1.06 7.68 -2.39 -0.02 1.04 16 39 H 0.22 3.37 8.06 -2.91 -0.02 3.34 16 40 H 0.06 1.73 8.04 -2.39 -0.02 1.71 16 41 H 0.07 1.74 7.96 -2.39 -0.02 1.72 16 Total: -1.00 -76.48 364.50 -2.69 -79.16 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: -0.39 Total: 33.27 kcal Atomic # 6 Polarization: 23.06 SS G_CDS: 6.05 Total: 29.12 kcal Atomic # 7 Polarization: -130.22 SS G_CDS: -8.92 Total: -139.14 kcal Atomic # 8 Polarization: -53.95 SS G_CDS: -0.12 Total: -54.06 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 7.55 SS G_CDS: -1.34 Total: 6.21 kcal Total: -76.48 -2.69 -79.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662602874.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.979 kcal (2) G-P(sol) polarization free energy of solvation -76.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds