Wall clock time and date at job start Tue Mar 31 2020 22:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86795 * 120.00020 * 2 1 4 4 H 1.48507 * 109.47209 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47334 * 299.99728 * 3 2 1 6 6 H 1.48503 * 109.47059 * 59.99758 * 3 2 1 7 7 C 1.38953 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00082 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99490 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99481 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99967 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00017 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47258 * 181.34135 * 12 10 9 14 14 C 1.46893 * 111.00176 * 162.31627 * 13 12 10 15 15 C 1.52992 * 109.47351 * 190.00103 * 14 13 12 16 16 N 1.46507 * 109.47514 * 179.97438 * 15 14 13 17 17 C 1.34770 * 120.00019 * 179.72215 * 16 15 14 18 18 O 1.21617 * 120.00408 * 359.97438 * 17 16 15 19 19 C 1.47175 * 119.99916 * 180.02562 * 17 16 15 20 20 C 1.38245 * 128.47717 * 179.97438 * 19 17 16 21 21 N 1.31236 * 111.88862 * 179.97438 * 20 19 17 22 22 N 1.27334 * 120.04251 * 0.02562 * 21 20 19 23 23 S 1.56649 * 109.73560 * 359.69508 * 22 21 20 24 24 C 1.46900 * 110.99618 * 286.27143 * 13 12 10 25 25 C 1.52993 * 117.50237 * 3.74700 * 24 13 12 26 26 C 1.53000 * 117.49890 * 295.12032 * 24 13 12 27 27 H 0.97001 * 119.99810 * 0.02562 * 1 2 3 28 28 H 0.96999 * 120.00767 * 0.02562 * 9 7 2 29 29 H 1.08995 * 109.46948 * 61.33869 * 12 10 9 30 30 H 1.09004 * 109.46639 * 301.34022 * 12 10 9 31 31 H 1.08997 * 109.47313 * 69.99642 * 14 13 12 32 32 H 1.09001 * 109.47064 * 309.99879 * 14 13 12 33 33 H 1.08997 * 109.47288 * 59.99524 * 15 14 13 34 34 H 1.09001 * 109.46853 * 299.99905 * 15 14 13 35 35 H 0.96998 * 119.99139 * 0.02562 * 16 15 14 36 36 H 1.08002 * 124.05422 * 0.02562 * 20 19 17 37 37 H 1.08999 * 115.55084 * 149.45840 * 24 13 12 38 38 H 1.08995 * 117.49967 * 359.97438 * 25 24 13 39 39 H 1.08993 * 117.50129 * 145.02477 * 25 24 13 40 40 H 1.08998 * 117.50166 * 214.98098 * 26 24 13 41 41 H 1.09005 * 117.49907 * 359.97438 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5578 0.0021 12 6 1.2437 -4.8630 0.0010 13 7 2.1979 -5.9794 0.0348 14 6 1.5380 -7.2236 0.4522 15 6 2.5949 -8.2977 0.7164 16 7 1.9367 -9.5385 1.1332 17 6 2.6743 -10.6304 1.4159 18 8 3.8863 -10.5860 1.3245 19 6 2.0132 -11.8770 1.8342 20 6 2.5914 -13.0890 2.1627 21 7 1.6924 -13.9868 2.4915 22 7 0.4555 -13.6845 2.4794 23 16 0.2806 -12.1891 2.0470 24 6 2.8601 -6.1453 -1.2660 25 6 2.5348 -5.1260 -2.3595 26 6 1.9882 -6.5518 -2.4557 27 1 -0.4850 0.8401 -0.0004 28 1 0.3533 -2.3907 -0.0002 29 1 0.6362 -4.9314 -0.9014 30 1 0.5981 -4.9101 0.8780 31 1 0.8663 -7.5611 -0.3371 32 1 0.9669 -7.0440 1.3631 33 1 3.2665 -7.9602 1.5057 34 1 3.1660 -8.4772 -0.1945 35 1 0.9699 -9.5752 1.2015 36 1 3.6553 -13.2744 2.1510 37 1 3.8763 -6.5378 -1.2295 38 1 1.8291 -4.3324 -2.1140 39 1 3.3371 -4.8475 -3.0427 40 1 2.4310 -7.2112 -3.2022 41 1 0.9233 -6.6965 -2.2732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663705337.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:12 Heat of formation + Delta-G solvation = 53.036785 kcal Electronic energy + Delta-G solvation = -25994.908727 eV Core-core repulsion = 22039.511316 eV Total energy + Delta-G solvation = -3955.397410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.31955 -40.06044 -39.45795 -37.36852 -35.56492 -33.90361 -33.38898 -32.58262 -31.24541 -29.85959 -27.99610 -26.41776 -24.35202 -23.89153 -22.73830 -21.95081 -21.12746 -20.18332 -19.70007 -18.86673 -17.87161 -17.81152 -17.02421 -16.53517 -16.40314 -15.92250 -15.61130 -15.45397 -14.93776 -14.54880 -14.42758 -14.07329 -13.99122 -13.48961 -13.45521 -13.20014 -12.71795 -12.48265 -12.43062 -12.03876 -11.61182 -11.52890 -11.29845 -11.06933 -11.03820 -10.84663 -10.61775 -10.60146 -10.50935 -10.36571 -10.35450 -10.23472 -9.96054 -9.51889 -9.48517 -8.53916 -7.98848 -7.94882 -6.42800 -3.83262 -0.78381 0.27932 0.95875 1.48184 2.43922 2.52694 3.15226 3.26107 3.33081 3.50873 3.78467 3.91779 4.00964 4.16472 4.20119 4.26298 4.63422 4.85396 5.04469 5.05760 5.08384 5.09598 5.13245 5.23713 5.30555 5.59814 5.67213 5.71586 5.76767 5.80519 5.90001 6.14897 6.21995 6.25637 6.41475 6.84387 7.05333 7.13091 7.16393 7.54674 7.57772 8.05259 8.61132 9.18070 9.53402 10.05762 10.75126 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024949 B = 0.001921 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.027116 B =14573.293396 C =14888.859491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.295 4.295 8 H 0.103 0.897 9 N -0.569 5.569 10 C 0.447 3.553 11 O -0.567 6.567 12 C 0.039 3.961 13 N -0.479 5.479 14 C 0.045 3.955 15 C 0.124 3.876 16 N -0.717 5.717 17 C 0.601 3.399 18 O -0.510 6.510 19 C -0.285 4.285 20 C 0.075 3.925 21 N -0.251 5.251 22 N -0.254 5.254 23 S 0.421 5.579 24 C 0.041 3.959 25 C -0.165 4.165 26 C -0.228 4.228 27 H 0.270 0.730 28 H 0.390 0.610 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.398 0.602 36 H 0.217 0.783 37 H 0.123 0.877 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.620 -22.186 0.658 22.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.755 3.245 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.425 4.425 8 H 0.121 0.879 9 N -0.206 5.206 10 C 0.232 3.768 11 O -0.449 6.449 12 C -0.093 4.093 13 N -0.201 5.201 14 C -0.084 4.084 15 C 0.001 3.999 16 N -0.369 5.369 17 C 0.384 3.616 18 O -0.386 6.386 19 C -0.426 4.426 20 C -0.092 4.092 21 N -0.115 5.115 22 N -0.236 5.236 23 S 0.556 5.444 24 C -0.068 4.068 25 C -0.202 4.202 26 C -0.267 4.267 27 H 0.080 0.920 28 H 0.223 0.777 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.233 0.767 36 H 0.234 0.766 37 H 0.140 0.860 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.419 -22.647 1.323 22.942 hybrid contribution 0.017 1.051 -0.769 1.303 sum -3.401 -21.596 0.554 21.869 Atomic orbital electron populations 1.69615 1.05904 1.27972 1.51011 1.25242 0.95628 0.99667 0.97509 0.85821 0.79740 0.81254 0.77667 1.19231 1.20834 1.20807 1.19724 0.93344 0.82132 1.47257 0.87876 1.41865 1.09079 1.04550 1.65151 1.19583 0.88505 0.84276 0.84457 1.90549 1.13429 1.86759 1.54164 1.22019 0.93942 0.91603 1.01698 1.61446 1.29763 1.02069 1.26865 1.22257 0.95218 0.90104 1.00784 1.21403 0.95496 0.81144 1.01840 1.45796 1.10274 1.11762 1.69118 1.16397 0.86393 0.81033 0.77821 1.90895 1.12639 1.83315 1.51718 1.28103 0.98907 1.01186 1.14395 1.24517 1.02722 0.86284 0.95653 1.70713 0.94115 1.30189 1.16480 1.78917 1.14248 1.11115 1.19298 1.82620 1.05585 1.10219 1.45981 1.22633 0.97961 1.03606 0.82639 1.23241 1.03637 0.92257 1.01075 1.23481 0.99923 0.99840 1.03504 0.91997 0.77657 0.92694 0.89383 0.93898 0.89963 0.89539 0.90377 0.76738 0.76628 0.85966 0.87816 0.88567 0.88876 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.01 13.05 55.50 0.72 -23.29 16 2 C 0.02 0.54 5.50 -17.47 -0.10 0.45 16 3 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.30 -7.97 9.68 -14.93 -0.14 -8.12 16 8 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 9 N -0.57 -13.74 5.29 -10.96 -0.06 -13.79 16 10 C 0.45 9.88 5.84 -10.98 -0.06 9.82 16 11 O -0.57 -14.58 14.79 5.54 0.08 -14.50 16 12 C 0.04 0.62 5.00 -4.97 -0.02 0.60 16 13 N -0.48 -6.97 4.34 -228.10 -0.99 -7.96 16 14 C 0.04 0.45 4.96 -3.83 -0.02 0.43 16 15 C 0.12 1.22 5.67 -4.04 -0.02 1.20 16 16 N -0.72 -5.49 5.55 -61.47 -0.34 -5.83 16 17 C 0.60 5.66 7.80 -12.64 -0.10 5.56 16 18 O -0.51 -6.70 16.98 5.26 0.09 -6.62 16 19 C -0.28 -2.14 6.81 -35.95 -0.24 -2.39 16 20 C 0.08 0.58 11.55 -17.80 -0.21 0.38 16 21 N -0.25 -2.34 11.54 30.36 0.35 -1.99 16 22 N -0.25 -2.25 12.51 60.35 0.75 -1.50 16 23 S 0.42 2.39 23.05 -107.50 -2.48 -0.09 16 24 C 0.04 0.58 4.55 -67.72 -0.31 0.27 16 25 C -0.16 -2.55 8.47 -26.73 -0.23 -2.78 16 26 C -0.23 -2.72 9.26 -26.73 -0.25 -2.97 16 27 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 28 H 0.39 9.03 7.90 -40.82 -0.32 8.71 16 29 H 0.06 0.81 5.99 -51.93 -0.31 0.50 16 30 H 0.09 1.25 7.77 -51.93 -0.40 0.84 16 31 H 0.04 0.37 6.87 -51.93 -0.36 0.01 16 32 H 0.08 0.72 7.85 -51.93 -0.41 0.31 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 0.84 7.30 -51.93 -0.38 0.46 16 35 H 0.40 1.90 7.90 -40.82 -0.32 1.57 16 36 H 0.22 1.24 8.06 -52.49 -0.42 0.81 16 37 H 0.12 1.74 8.03 -51.93 -0.42 1.33 16 38 H 0.10 1.85 4.92 -51.93 -0.26 1.59 16 39 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.09 0.97 7.15 -51.93 -0.37 0.60 16 LS Contribution 362.70 15.07 5.47 5.47 Total: -1.00 -33.34 362.70 -7.87 -41.21 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -4.75 Total: 10.72 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -1.70 Total: 2.45 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.44 Total: -54.35 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: 0.17 Total: -21.12 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -2.48 Total: -0.09 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.34 -7.87 -41.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663705337.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.249 kcal (2) G-P(sol) polarization free energy of solvation -33.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds