Wall clock time and date at job start Tue Mar 31 2020 22:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86795 * 120.00020 * 2 1 4 4 H 1.48507 * 109.47209 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47334 * 299.99728 * 3 2 1 6 6 H 1.48503 * 109.47059 * 59.99758 * 3 2 1 7 7 C 1.38953 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00082 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99490 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99481 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99967 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00017 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47258 * 181.34135 * 12 10 9 14 14 C 1.46893 * 111.00176 * 162.31627 * 13 12 10 15 15 C 1.52992 * 109.47351 * 190.00103 * 14 13 12 16 16 N 1.46507 * 109.47514 * 179.97438 * 15 14 13 17 17 C 1.34770 * 120.00019 * 179.72215 * 16 15 14 18 18 O 1.21617 * 120.00408 * 359.97438 * 17 16 15 19 19 C 1.47175 * 119.99916 * 180.02562 * 17 16 15 20 20 C 1.38245 * 128.47717 * 179.97438 * 19 17 16 21 21 N 1.31236 * 111.88862 * 179.97438 * 20 19 17 22 22 N 1.27334 * 120.04251 * 0.02562 * 21 20 19 23 23 S 1.56649 * 109.73560 * 359.69508 * 22 21 20 24 24 C 1.46900 * 110.99618 * 286.27143 * 13 12 10 25 25 C 1.52993 * 117.50237 * 3.74700 * 24 13 12 26 26 C 1.53000 * 117.49890 * 295.12032 * 24 13 12 27 27 H 0.97001 * 119.99810 * 0.02562 * 1 2 3 28 28 H 0.96999 * 120.00767 * 0.02562 * 9 7 2 29 29 H 1.08995 * 109.46948 * 61.33869 * 12 10 9 30 30 H 1.09004 * 109.46639 * 301.34022 * 12 10 9 31 31 H 1.08997 * 109.47313 * 69.99642 * 14 13 12 32 32 H 1.09001 * 109.47064 * 309.99879 * 14 13 12 33 33 H 1.08997 * 109.47288 * 59.99524 * 15 14 13 34 34 H 1.09001 * 109.46853 * 299.99905 * 15 14 13 35 35 H 0.96998 * 119.99139 * 0.02562 * 16 15 14 36 36 H 1.08002 * 124.05422 * 0.02562 * 20 19 17 37 37 H 1.08999 * 115.55084 * 149.45840 * 24 13 12 38 38 H 1.08995 * 117.49967 * 359.97438 * 25 24 13 39 39 H 1.08993 * 117.50129 * 145.02477 * 25 24 13 40 40 H 1.08998 * 117.50166 * 214.98098 * 26 24 13 41 41 H 1.09005 * 117.49907 * 359.97438 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5578 0.0021 12 6 1.2437 -4.8630 0.0010 13 7 2.1979 -5.9794 0.0348 14 6 1.5380 -7.2236 0.4522 15 6 2.5949 -8.2977 0.7164 16 7 1.9367 -9.5385 1.1332 17 6 2.6743 -10.6304 1.4159 18 8 3.8863 -10.5860 1.3245 19 6 2.0132 -11.8770 1.8342 20 6 2.5914 -13.0890 2.1627 21 7 1.6924 -13.9868 2.4915 22 7 0.4555 -13.6845 2.4794 23 16 0.2806 -12.1891 2.0470 24 6 2.8601 -6.1453 -1.2660 25 6 2.5348 -5.1260 -2.3595 26 6 1.9882 -6.5518 -2.4557 27 1 -0.4850 0.8401 -0.0004 28 1 0.3533 -2.3907 -0.0002 29 1 0.6362 -4.9314 -0.9014 30 1 0.5981 -4.9101 0.8780 31 1 0.8663 -7.5611 -0.3371 32 1 0.9669 -7.0440 1.3631 33 1 3.2665 -7.9602 1.5057 34 1 3.1660 -8.4772 -0.1945 35 1 0.9699 -9.5752 1.2015 36 1 3.6553 -13.2744 2.1510 37 1 3.8763 -6.5378 -1.2295 38 1 1.8291 -4.3324 -2.1140 39 1 3.3371 -4.8475 -3.0427 40 1 2.4310 -7.2112 -3.2022 41 1 0.9233 -6.6965 -2.2732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663705337.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:11 Heat of formation + Delta-G solvation = 25.932342 kcal Electronic energy + Delta-G solvation = -25996.084064 eV Core-core repulsion = 22039.511316 eV Total energy + Delta-G solvation = -3956.572747 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.92605 -41.06914 -40.53955 -38.94271 -36.41682 -35.83000 -34.40863 -33.27615 -33.14708 -30.88052 -28.83846 -27.65225 -26.03634 -24.70318 -23.53310 -23.02790 -21.85751 -21.45165 -20.48313 -20.22620 -19.66313 -18.57987 -18.08337 -17.61861 -17.32397 -17.07447 -16.55230 -16.38504 -16.21954 -15.73937 -15.59032 -15.28501 -15.18586 -14.91012 -14.62624 -14.13587 -13.82981 -13.55247 -13.46504 -13.19703 -13.01746 -12.97466 -12.70596 -12.36530 -12.26716 -12.13232 -12.08474 -11.58413 -11.55477 -11.45190 -11.25698 -11.19129 -11.02481 -10.92624 -10.25746 -10.25031 -9.93293 -9.15209 -8.42337 -5.89341 -1.36897 -0.25326 0.41345 0.86901 1.37723 1.42863 1.56028 1.70734 1.83039 2.14509 2.31341 2.77658 2.91882 2.97152 3.24727 3.43301 3.57789 3.67747 3.76072 3.98676 4.01432 4.06544 4.17288 4.34071 4.42693 4.54166 4.57575 4.59444 4.75959 4.90596 4.97078 5.00180 5.15150 5.19347 5.24025 5.45870 5.86963 6.09807 6.15489 6.24075 6.56109 6.67497 6.91503 7.20175 7.64735 8.22135 8.75336 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024949 B = 0.001921 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.027116 B =14573.293396 C =14888.859491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 0.987 3.013 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.324 4.324 8 H 0.076 0.924 9 N -0.580 5.580 10 C 0.449 3.551 11 O -0.608 6.608 12 C 0.053 3.947 13 N -0.502 5.502 14 C 0.049 3.951 15 C 0.133 3.867 16 N -0.702 5.702 17 C 0.605 3.395 18 O -0.554 6.554 19 C -0.302 4.302 20 C 0.076 3.924 21 N -0.278 5.278 22 N -0.290 5.290 23 S 0.515 5.485 24 C 0.031 3.969 25 C -0.197 4.197 26 C -0.184 4.184 27 H 0.275 0.725 28 H 0.395 0.605 29 H 0.075 0.925 30 H 0.115 0.885 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.416 0.584 36 H 0.228 0.772 37 H 0.116 0.884 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.113 0.887 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.707 -23.224 0.548 23.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.214 4.214 3 Si 0.812 3.188 4 H -0.200 1.200 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.453 4.453 8 H 0.094 0.906 9 N -0.219 5.219 10 C 0.236 3.764 11 O -0.492 6.492 12 C -0.078 4.078 13 N -0.225 5.225 14 C -0.078 4.078 15 C 0.009 3.991 16 N -0.354 5.354 17 C 0.389 3.611 18 O -0.432 6.432 19 C -0.443 4.443 20 C -0.092 4.092 21 N -0.141 5.141 22 N -0.272 5.272 23 S 0.649 5.351 24 C -0.078 4.078 25 C -0.235 4.235 26 C -0.223 4.223 27 H 0.085 0.915 28 H 0.228 0.772 29 H 0.093 0.907 30 H 0.133 0.867 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.253 0.747 36 H 0.244 0.756 37 H 0.133 0.867 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.131 0.869 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.574 -23.716 1.219 24.392 hybrid contribution 0.640 1.356 -0.742 1.673 sum -4.934 -22.360 0.476 22.903 Atomic orbital electron populations 1.69667 1.06629 1.28935 1.51106 1.25937 0.96512 1.02133 0.96821 0.84947 0.78043 0.77644 0.78180 1.20019 1.19809 1.19807 1.19613 0.92504 0.84058 1.49166 0.90592 1.41919 1.09176 1.04631 1.66173 1.20689 0.88359 0.85748 0.81636 1.90519 1.15677 1.87722 1.55301 1.21826 0.93508 0.88639 1.03805 1.61290 1.30411 1.03578 1.27242 1.22312 0.95188 0.87917 1.02395 1.21155 0.95381 0.81870 1.00709 1.45571 1.11047 1.10603 1.68214 1.16550 0.85897 0.81627 0.77051 1.90878 1.14594 1.84097 1.53670 1.27929 1.00663 1.00369 1.15383 1.24749 1.03257 0.86227 0.94998 1.70778 0.94352 1.31120 1.17810 1.78653 1.14428 1.13586 1.20521 1.82204 1.02736 1.07368 1.42743 1.22620 0.98624 1.03291 0.83223 1.23144 1.03912 0.93655 1.02748 1.23517 1.00555 0.96590 1.01684 0.91522 0.77172 0.90743 0.86745 0.91194 0.88058 0.91766 0.91248 0.74712 0.75617 0.86657 0.90422 0.89594 0.86865 0.87548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.83 13.05 21.66 0.28 -48.55 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 3 Si 0.99 42.73 29.55 68.60 2.03 44.76 16 4 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.32 -17.99 9.68 84.04 0.81 -17.18 16 8 H 0.08 4.56 7.16 -2.92 -0.02 4.54 16 9 N -0.58 -28.54 5.29 -306.98 -1.62 -30.16 16 10 C 0.45 20.05 5.84 87.66 0.51 20.57 16 11 O -0.61 -32.28 14.79 -3.08 -0.05 -32.33 16 12 C 0.05 1.61 5.00 85.56 0.43 2.04 16 13 N -0.50 -13.72 4.34 -875.57 -3.80 -17.52 16 14 C 0.05 0.81 4.96 86.30 0.43 1.24 16 15 C 0.13 2.36 5.67 86.38 0.49 2.85 16 16 N -0.70 -8.91 5.55 -466.64 -2.59 -11.50 16 17 C 0.61 10.49 7.80 86.59 0.68 11.16 16 18 O -0.55 -14.41 16.98 -4.08 -0.07 -14.48 16 19 C -0.30 -4.01 6.81 24.62 0.17 -3.84 16 20 C 0.08 1.10 11.55 84.78 0.98 2.08 16 21 N -0.28 -4.91 11.54 -57.87 -0.67 -5.58 16 22 N -0.29 -4.65 12.51 37.02 0.46 -4.19 16 23 S 0.51 4.37 23.05 -56.49 -1.30 3.07 16 24 C 0.03 0.86 4.55 44.91 0.20 1.07 16 25 C -0.20 -6.08 8.47 30.59 0.26 -5.82 16 26 C -0.18 -3.86 9.26 30.60 0.28 -3.58 16 27 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 28 H 0.39 18.37 7.90 -92.71 -0.73 17.64 16 29 H 0.07 2.00 5.99 -2.39 -0.01 1.99 16 30 H 0.11 2.88 7.77 -2.39 -0.02 2.86 16 31 H 0.07 0.83 6.87 -2.39 -0.02 0.82 16 32 H 0.10 1.33 7.85 -2.39 -0.02 1.32 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.39 7.30 -2.39 -0.02 1.37 16 35 H 0.42 2.32 7.90 -92.71 -0.73 1.59 16 36 H 0.23 2.52 8.06 -2.91 -0.02 2.50 16 37 H 0.12 3.29 8.03 -2.39 -0.02 3.27 16 38 H 0.08 2.80 4.92 -2.39 -0.01 2.79 16 39 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 40 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.11 1.86 7.15 -2.38 -0.02 1.84 16 Total: -1.00 -75.36 362.70 -1.97 -77.33 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: -0.35 Total: 28.86 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 5.71 Total: 10.29 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -7.94 Total: -117.49 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -0.11 Total: -46.81 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: 4.37 SS G_CDS: -1.30 Total: 3.07 kcal Total: -75.36 -1.97 -77.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663705337.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.260 kcal (2) G-P(sol) polarization free energy of solvation -75.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds