Wall clock time and date at job start Tue Mar 31 2020 22:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86800 * 119.99647 * 2 1 4 4 H 1.48508 * 109.47107 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47324 * 299.99679 * 3 2 1 6 6 H 1.48501 * 109.47136 * 59.99857 * 3 2 1 7 7 C 1.40025 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00169 * 179.97438 * 7 2 1 9 9 C 1.41339 * 120.00157 * 0.02562 * 7 2 1 10 10 C 1.40604 * 119.78960 * 179.97438 * 9 7 2 11 11 C 1.38310 * 119.12804 * 180.02562 * 10 9 7 12 12 C 1.38691 * 118.67120 * 359.72968 * 11 10 9 13 13 C 1.39644 * 119.49469 * 0.53065 * 12 11 10 14 14 N 1.39250 * 119.57297 * 179.72657 * 13 12 11 15 15 C 1.34779 * 120.00038 * 185.32262 * 14 13 12 16 16 O 1.21582 * 119.99589 * 354.82874 * 15 14 13 17 17 N 1.34778 * 120.00110 * 174.81802 * 15 14 13 18 18 N 1.40094 * 120.00060 * 0.02562 * 17 15 14 19 19 C 1.39307 * 120.00163 * 179.97438 * 18 17 15 20 20 N 1.32975 * 125.27178 * 359.96970 * 19 18 17 21 21 C 1.32955 * 109.62416 * 180.02562 * 20 19 18 22 22 C 1.40599 * 132.75419 * 180.02562 * 21 20 19 23 23 C 1.36255 * 119.28090 * 179.97438 * 22 21 20 24 24 C 1.40210 * 119.59180 * 0.02562 * 23 22 21 25 25 C 1.35247 * 120.19803 * 359.97438 * 24 23 22 26 26 N 1.35844 * 120.59030 * 0.02562 * 25 24 23 27 27 N 1.31794 * 125.27625 * 179.97438 * 19 18 17 28 28 N 1.31923 * 120.85052 * 359.45787 * 13 12 11 29 29 H 0.96995 * 120.00190 * 0.02562 * 1 2 3 30 30 H 1.07990 * 120.43623 * 359.97438 * 10 9 7 31 31 H 1.07997 * 120.66473 * 180.02562 * 11 10 9 32 32 H 1.07997 * 120.25231 * 180.26735 * 12 11 10 33 33 H 0.96997 * 120.00269 * 5.33063 * 14 13 12 34 34 H 0.97005 * 119.99631 * 180.02562 * 17 15 14 35 35 H 0.96999 * 119.99874 * 359.97438 * 18 17 15 36 36 H 1.08003 * 120.35888 * 359.93651 * 22 21 20 37 37 H 1.07997 * 120.20267 * 179.97438 * 23 22 21 38 38 H 1.07998 * 119.89985 * 179.97438 * 24 23 22 39 39 H 1.08000 * 119.70651 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7014 1.3465 0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8825 2.3965 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0877 -1.2126 0.0001 9 6 1.3010 -2.4367 0.0005 10 6 2.0086 -3.6517 0.0005 11 6 1.3034 -4.8415 0.0000 12 6 -0.0827 -4.7935 0.0052 13 6 -0.7277 -3.5550 -0.0004 14 7 -2.1193 -3.5049 -0.0010 15 6 -2.7509 -2.3197 -0.1146 16 8 -2.1091 -1.2871 -0.1220 17 7 -4.0940 -2.2792 -0.2203 18 7 -4.8335 -3.4690 -0.2115 19 6 -6.2217 -3.4271 -0.3202 20 7 -6.9498 -2.3205 -0.4364 21 6 -8.2379 -2.6399 -0.5171 22 6 -9.4060 -1.8687 -0.6490 23 6 -10.6149 -2.4947 -0.7073 24 6 -10.6743 -3.8937 -0.6346 25 6 -9.5386 -4.6172 -0.5079 26 7 -8.3294 -4.0010 -0.4490 27 7 -7.0169 -4.4781 -0.3238 28 7 -0.0357 -2.4318 0.0001 29 1 -0.4850 0.8400 -0.0004 30 1 3.0885 -3.6559 0.0001 31 1 1.8217 -5.7890 0.0004 32 1 -0.6588 -5.7070 0.0093 33 1 -2.6341 -4.3229 0.0806 34 1 -4.5485 -1.4261 -0.3025 35 1 -4.3789 -4.3220 -0.1297 36 1 -9.3459 -0.7917 -0.7028 37 1 -11.5217 -1.9169 -0.8080 38 1 -11.6298 -4.3950 -0.6799 39 1 -9.5936 -5.6944 -0.4530 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664367759.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:34 Heat of formation + Delta-G solvation = 217.769489 kcal Electronic energy + Delta-G solvation = -27463.598593 eV Core-core repulsion = 23412.193328 eV Total energy + Delta-G solvation = -4051.405265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.79894 -39.76537 -38.40713 -37.70487 -35.75520 -34.19702 -33.73842 -33.00241 -31.68952 -30.31327 -30.05588 -29.27218 -28.63053 -25.54638 -24.03097 -23.66509 -22.47528 -21.90047 -21.35487 -19.99096 -18.81071 -18.20100 -17.72482 -17.33400 -16.89511 -16.48480 -16.11056 -15.66781 -15.28511 -14.83864 -14.77014 -14.58622 -14.44021 -13.77820 -13.45113 -13.30368 -13.08828 -12.91934 -12.84097 -12.28039 -11.94972 -11.60050 -11.49269 -11.32528 -11.12975 -10.93165 -10.63631 -10.47599 -10.23760 -9.92518 -9.86520 -9.57805 -9.42651 -9.05379 -8.60216 -7.98515 -7.60928 -7.28150 -6.99544 -6.12771 -4.39397 0.37425 0.70097 1.45139 2.37871 2.59518 2.81525 3.09977 3.15938 3.19926 3.23334 3.26754 3.27634 3.75655 4.03721 4.07326 4.08329 4.35176 4.48040 4.75538 4.94011 4.95113 5.09858 5.43884 5.68243 5.74292 5.89548 6.03205 6.05523 6.10059 6.41927 6.47170 6.57108 6.60689 6.73151 6.83870 7.18845 7.24490 7.58096 7.58725 7.62720 7.80169 7.89443 8.15803 8.30890 8.59623 8.78313 9.04607 9.34635 10.23002 10.49373 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018581 B = 0.002423 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.562986 B =11555.425802 C =13047.933902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.653 5.653 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.423 4.423 8 H 0.084 0.916 9 C 0.270 3.730 10 C -0.303 4.303 11 C -0.035 4.035 12 C -0.356 4.356 13 C 0.384 3.616 14 N -0.670 5.670 15 C 0.678 3.322 16 O -0.440 6.440 17 N -0.530 5.530 18 N -0.495 5.495 19 C 0.517 3.483 20 N -0.574 5.574 21 C 0.308 3.692 22 C -0.116 4.116 23 C -0.055 4.055 24 C -0.175 4.175 25 C 0.127 3.873 26 N -0.281 5.281 27 N -0.384 5.384 28 N -0.473 5.473 29 H 0.273 0.727 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.390 0.610 34 H 0.435 0.565 35 H 0.436 0.564 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.159 0.841 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.440 -6.242 -1.167 24.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.271 5.271 2 C -0.173 4.173 3 Si 0.721 3.279 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.453 4.453 8 H 0.102 0.898 9 C 0.146 3.854 10 C -0.326 4.326 11 C -0.059 4.059 12 C -0.382 4.382 13 C 0.145 3.855 14 N -0.320 5.320 15 C 0.376 3.624 16 O -0.298 6.298 17 N -0.293 5.293 18 N -0.236 5.236 19 C 0.149 3.851 20 N -0.311 5.311 21 C 0.055 3.945 22 C -0.138 4.138 23 C -0.081 4.081 24 C -0.198 4.198 25 C -0.003 4.003 26 N -0.055 5.055 27 N -0.228 5.228 28 N -0.191 5.191 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.224 0.776 34 H 0.280 0.720 35 H 0.280 0.720 36 H 0.174 0.826 37 H 0.166 0.834 38 H 0.176 0.824 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -22.659 -4.726 -1.103 23.173 hybrid contribution 0.173 -0.746 0.018 0.766 sum -22.486 -5.472 -1.085 23.168 Atomic orbital electron populations 1.70301 1.05761 1.27477 1.23592 1.26197 0.95143 1.00670 0.95326 0.86441 0.80840 0.82187 0.78385 1.18618 1.20051 1.20063 1.19632 0.94121 0.89328 1.42235 0.89826 1.18386 0.86990 0.92046 0.88019 1.21630 0.98613 0.93481 1.18896 1.20547 0.93048 0.96587 0.95740 1.20415 0.94814 0.94664 1.28329 1.18291 0.82011 0.91121 0.94121 1.42564 1.05658 1.07420 1.76389 1.16328 0.79405 0.86100 0.80608 1.91508 1.57397 1.30218 1.50672 1.45236 1.01760 0.99213 1.83079 1.41805 0.97020 1.02258 1.82503 1.19978 0.85964 0.87304 0.91811 1.70578 0.99345 1.27139 1.34005 1.21559 0.93361 0.82969 0.96632 1.20307 0.87823 1.01003 1.04687 1.21226 0.97891 0.94435 0.94554 1.20885 0.97688 0.94421 1.06820 1.21537 0.80672 1.00204 0.97889 1.47382 1.05870 1.07017 1.45243 1.78803 0.84038 1.15924 1.44061 1.68632 1.07088 1.23065 1.20363 0.91529 0.88460 0.88496 0.89069 0.77566 0.71962 0.71992 0.82629 0.83359 0.82390 0.81285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.35 8.99 55.55 0.50 -17.86 16 2 C 0.06 1.49 5.50 -17.35 -0.10 1.40 16 3 Si 0.90 19.50 29.56 -169.99 -5.02 14.48 16 4 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.42 -11.71 9.14 -37.73 -0.34 -12.06 16 8 H 0.08 2.17 7.85 -52.48 -0.41 1.75 16 9 C 0.27 7.66 6.55 -84.99 -0.56 7.10 16 10 C -0.30 -7.65 9.83 -38.66 -0.38 -8.03 16 11 C -0.03 -0.80 10.15 -39.39 -0.40 -1.20 16 12 C -0.36 -8.02 9.95 -38.89 -0.39 -8.41 16 13 C 0.38 9.47 7.43 -154.99 -1.15 8.32 16 14 N -0.67 -13.56 5.34 -15.79 -0.08 -13.64 16 15 C 0.68 14.41 8.63 -86.92 -0.75 13.66 16 16 O -0.44 -11.43 12.94 5.29 0.07 -11.36 16 17 N -0.53 -9.10 6.32 27.63 0.17 -8.92 16 18 N -0.49 -7.26 6.45 29.91 0.19 -7.07 16 19 C 0.52 7.78 9.03 -321.76 -2.90 4.88 16 20 N -0.57 -8.59 10.75 -13.19 -0.14 -8.73 16 21 C 0.31 3.72 7.87 -156.29 -1.23 2.49 16 22 C -0.12 -0.90 10.11 -39.41 -0.40 -1.30 16 23 C -0.05 -0.25 10.07 -39.55 -0.40 -0.65 16 24 C -0.17 -0.71 9.99 -39.91 -0.40 -1.11 16 25 C 0.13 0.86 11.20 -16.84 -0.19 0.67 16 26 N -0.28 -3.20 3.89 -12.35 -0.05 -3.25 16 27 N -0.38 -5.36 12.81 29.91 0.38 -4.98 16 28 N -0.47 -13.41 5.74 -10.26 -0.06 -13.47 16 29 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 30 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 31 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 33 H 0.39 6.19 6.64 -40.82 -0.27 5.92 16 34 H 0.44 7.43 8.39 -182.60 -1.53 5.90 16 35 H 0.44 5.54 6.84 -182.60 -1.25 4.29 16 36 H 0.16 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.15 0.18 8.06 -52.49 -0.42 -0.24 16 38 H 0.16 0.09 8.06 -52.49 -0.42 -0.33 16 39 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 343.96 15.07 5.18 5.18 Total: -1.00 -36.49 343.96 -14.00 -50.49 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -5.56 Total: 13.36 kcal Atomic # 6 Polarization: 15.35 SS G_CDS: -9.58 Total: 5.77 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: 0.92 Total: -77.92 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.07 Total: -11.36 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.49 -14.00 -50.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664367759.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 268.255 kcal (2) G-P(sol) polarization free energy of solvation -36.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 231.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 217.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds