Wall clock time and date at job start Tue Mar 31 2020 22:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86800 * 119.99647 * 2 1 4 4 H 1.48508 * 109.47107 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47324 * 299.99679 * 3 2 1 6 6 H 1.48501 * 109.47136 * 59.99857 * 3 2 1 7 7 C 1.40025 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00169 * 179.97438 * 7 2 1 9 9 C 1.41339 * 120.00157 * 0.02562 * 7 2 1 10 10 C 1.40604 * 119.78960 * 179.97438 * 9 7 2 11 11 C 1.38310 * 119.12804 * 180.02562 * 10 9 7 12 12 C 1.38691 * 118.67120 * 359.72968 * 11 10 9 13 13 C 1.39644 * 119.49469 * 0.53065 * 12 11 10 14 14 N 1.39250 * 119.57297 * 179.72657 * 13 12 11 15 15 C 1.34779 * 120.00038 * 185.32262 * 14 13 12 16 16 O 1.21582 * 119.99589 * 354.82874 * 15 14 13 17 17 N 1.34778 * 120.00110 * 174.81802 * 15 14 13 18 18 N 1.40094 * 120.00060 * 0.02562 * 17 15 14 19 19 C 1.39307 * 120.00163 * 179.97438 * 18 17 15 20 20 N 1.32975 * 125.27178 * 359.96970 * 19 18 17 21 21 C 1.32955 * 109.62416 * 180.02562 * 20 19 18 22 22 C 1.40599 * 132.75419 * 180.02562 * 21 20 19 23 23 C 1.36255 * 119.28090 * 179.97438 * 22 21 20 24 24 C 1.40210 * 119.59180 * 0.02562 * 23 22 21 25 25 C 1.35247 * 120.19803 * 359.97438 * 24 23 22 26 26 N 1.35844 * 120.59030 * 0.02562 * 25 24 23 27 27 N 1.31794 * 125.27625 * 179.97438 * 19 18 17 28 28 N 1.31923 * 120.85052 * 359.45787 * 13 12 11 29 29 H 0.96995 * 120.00190 * 0.02562 * 1 2 3 30 30 H 1.07990 * 120.43623 * 359.97438 * 10 9 7 31 31 H 1.07997 * 120.66473 * 180.02562 * 11 10 9 32 32 H 1.07997 * 120.25231 * 180.26735 * 12 11 10 33 33 H 0.96997 * 120.00269 * 5.33063 * 14 13 12 34 34 H 0.97005 * 119.99631 * 180.02562 * 17 15 14 35 35 H 0.96999 * 119.99874 * 359.97438 * 18 17 15 36 36 H 1.08003 * 120.35888 * 359.93651 * 22 21 20 37 37 H 1.07997 * 120.20267 * 179.97438 * 23 22 21 38 38 H 1.07998 * 119.89985 * 179.97438 * 24 23 22 39 39 H 1.08000 * 119.70651 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7014 1.3465 0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8825 2.3965 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0877 -1.2126 0.0001 9 6 1.3010 -2.4367 0.0005 10 6 2.0086 -3.6517 0.0005 11 6 1.3034 -4.8415 0.0000 12 6 -0.0827 -4.7935 0.0052 13 6 -0.7277 -3.5550 -0.0004 14 7 -2.1193 -3.5049 -0.0010 15 6 -2.7509 -2.3197 -0.1146 16 8 -2.1091 -1.2871 -0.1220 17 7 -4.0940 -2.2792 -0.2203 18 7 -4.8335 -3.4690 -0.2115 19 6 -6.2217 -3.4271 -0.3202 20 7 -6.9498 -2.3205 -0.4364 21 6 -8.2379 -2.6399 -0.5171 22 6 -9.4060 -1.8687 -0.6490 23 6 -10.6149 -2.4947 -0.7073 24 6 -10.6743 -3.8937 -0.6346 25 6 -9.5386 -4.6172 -0.5079 26 7 -8.3294 -4.0010 -0.4490 27 7 -7.0169 -4.4781 -0.3238 28 7 -0.0357 -2.4318 0.0001 29 1 -0.4850 0.8400 -0.0004 30 1 3.0885 -3.6559 0.0001 31 1 1.8217 -5.7890 0.0004 32 1 -0.6588 -5.7070 0.0093 33 1 -2.6341 -4.3229 0.0806 34 1 -4.5485 -1.4261 -0.3025 35 1 -4.3789 -4.3220 -0.1297 36 1 -9.3459 -0.7917 -0.7028 37 1 -11.5217 -1.9169 -0.8080 38 1 -11.6298 -4.3950 -0.6799 39 1 -9.5936 -5.6944 -0.4530 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664367759.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:33 Heat of formation + Delta-G solvation = 195.318222 kcal Electronic energy + Delta-G solvation = -27464.572153 eV Core-core repulsion = 23412.193328 eV Total energy + Delta-G solvation = -4052.378825 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.61581 -41.41548 -39.72458 -38.98788 -37.04753 -36.03279 -34.88098 -34.46297 -32.77068 -32.21782 -30.95057 -30.68247 -29.96512 -27.48314 -24.73385 -24.49009 -24.10565 -23.26021 -22.81846 -21.62991 -20.34377 -19.38409 -19.03968 -18.44466 -17.94614 -17.53663 -17.37677 -16.76056 -16.44745 -16.34418 -16.26605 -16.11149 -15.62809 -15.45735 -15.15428 -14.67403 -14.51053 -13.94254 -13.77483 -13.73745 -13.34070 -12.93704 -12.72660 -12.54534 -12.34559 -12.32597 -12.23593 -12.19874 -11.75608 -11.61834 -11.28812 -11.13614 -10.93550 -10.62076 -9.92076 -9.36275 -9.19916 -8.98268 -8.70090 -8.04908 -6.41965 -0.15881 0.00876 0.40540 0.91936 1.25417 1.40475 1.44778 1.52126 1.55602 1.71554 1.88341 2.27037 2.33180 2.50269 2.86033 3.00102 3.27397 3.78485 3.93476 4.04468 4.16147 4.29685 4.43986 4.47753 4.61560 4.76011 4.86313 4.95766 4.98635 5.03369 5.16918 5.25159 5.29420 5.38575 5.51486 5.60313 5.73969 5.80632 5.90085 5.96934 6.24919 6.27519 6.37098 6.75230 6.84604 7.05378 7.24239 7.70014 8.31535 8.56860 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018581 B = 0.002423 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.562986 B =11555.425802 C =13047.933902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.691 5.691 2 C 0.008 3.992 3 Si 0.977 3.023 4 H -0.252 1.252 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.463 4.463 8 H 0.088 0.912 9 C 0.236 3.764 10 C -0.324 4.324 11 C -0.032 4.032 12 C -0.343 4.343 13 C 0.361 3.639 14 N -0.656 5.656 15 C 0.677 3.323 16 O -0.492 6.492 17 N -0.516 5.516 18 N -0.493 5.493 19 C 0.501 3.499 20 N -0.618 5.618 21 C 0.283 3.717 22 C -0.139 4.139 23 C -0.028 4.028 24 C -0.144 4.144 25 C 0.098 3.902 26 N -0.286 5.286 27 N -0.402 5.402 28 N -0.508 5.508 29 H 0.270 0.730 30 H 0.107 0.893 31 H 0.140 0.860 32 H 0.133 0.867 33 H 0.411 0.589 34 H 0.436 0.564 35 H 0.442 0.558 36 H 0.165 0.835 37 H 0.194 0.806 38 H 0.208 0.792 39 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.760 -7.882 -1.386 27.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.310 5.310 2 C -0.217 4.217 3 Si 0.798 3.202 4 H -0.176 1.176 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.493 4.493 8 H 0.106 0.894 9 C 0.110 3.890 10 C -0.347 4.347 11 C -0.056 4.056 12 C -0.368 4.368 13 C 0.122 3.878 14 N -0.309 5.309 15 C 0.375 3.625 16 O -0.354 6.354 17 N -0.276 5.276 18 N -0.237 5.237 19 C 0.133 3.867 20 N -0.357 5.357 21 C 0.032 3.968 22 C -0.161 4.161 23 C -0.053 4.053 24 C -0.166 4.166 25 C -0.031 4.031 26 N -0.060 5.060 27 N -0.247 5.247 28 N -0.227 5.227 29 H 0.081 0.919 30 H 0.126 0.874 31 H 0.158 0.842 32 H 0.151 0.849 33 H 0.249 0.751 34 H 0.281 0.719 35 H 0.288 0.712 36 H 0.182 0.818 37 H 0.211 0.789 38 H 0.225 0.775 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -26.098 -6.450 -1.325 26.916 hybrid contribution 0.749 -0.488 0.061 0.896 sum -25.349 -6.938 -1.265 26.312 Atomic orbital electron populations 1.70510 1.07351 1.28018 1.25112 1.27080 0.96008 1.04176 0.94439 0.85241 0.79614 0.77039 0.78301 1.17556 1.19708 1.19658 1.19948 0.94528 0.90348 1.44526 0.89371 1.18893 0.87704 0.93577 0.88784 1.21825 0.99354 0.93689 1.19862 1.21036 0.93306 0.97477 0.93801 1.20902 0.95277 0.95327 1.25311 1.18776 0.83491 0.91430 0.94121 1.42332 1.04471 1.08203 1.75853 1.16367 0.80184 0.85676 0.80276 1.91493 1.59293 1.31824 1.52819 1.44698 1.00824 1.00451 1.81600 1.41598 0.97212 1.01098 1.83758 1.20057 0.85733 0.87997 0.92907 1.70482 1.01055 1.27890 1.36224 1.22094 0.93538 0.83822 0.97317 1.20683 0.87669 1.01579 1.06189 1.21855 0.98012 0.95052 0.90409 1.21600 0.98440 0.94271 1.02328 1.22385 0.79788 1.02016 0.98868 1.47493 1.06057 1.07097 1.45353 1.78617 0.85375 1.16165 1.44588 1.68584 1.07523 1.25234 1.21361 0.91914 0.87447 0.84185 0.84919 0.75107 0.71904 0.71201 0.81771 0.78857 0.77540 0.78946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -41.09 8.99 21.84 0.20 -40.90 16 2 C 0.01 0.46 5.50 85.29 0.47 0.93 16 3 Si 0.98 41.85 29.56 68.60 2.03 43.88 16 4 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 7 C -0.46 -26.82 9.14 23.47 0.21 -26.60 16 8 H 0.09 4.77 7.85 -2.91 -0.02 4.74 16 9 C 0.24 13.88 6.55 40.20 0.26 14.14 16 10 C -0.32 -16.52 9.83 22.86 0.22 -16.30 16 11 C -0.03 -1.40 10.15 22.40 0.23 -1.18 16 12 C -0.34 -14.85 9.95 22.72 0.23 -14.63 16 13 C 0.36 18.05 7.43 133.24 0.99 19.04 16 14 N -0.66 -27.08 5.34 -322.13 -1.72 -28.80 16 15 C 0.68 30.23 8.63 179.05 1.55 31.77 16 16 O -0.49 -27.22 12.94 -3.97 -0.05 -27.27 16 17 N -0.52 -18.72 6.32 -184.75 -1.17 -19.88 16 18 N -0.49 -15.07 6.45 -59.27 -0.38 -15.45 16 19 C 0.50 15.69 9.03 261.12 2.36 18.05 16 20 N -0.62 -19.34 10.75 -195.66 -2.10 -21.45 16 21 C 0.28 6.80 7.87 134.06 1.06 7.86 16 22 C -0.14 -1.90 10.11 22.38 0.23 -1.67 16 23 C -0.03 -0.12 10.07 22.29 0.22 0.11 16 24 C -0.14 -0.43 9.99 22.06 0.22 -0.21 16 25 C 0.10 1.04 11.20 83.38 0.93 1.97 16 26 N -0.29 -6.31 3.89 -192.98 -0.75 -7.07 16 27 N -0.40 -11.42 12.81 -59.30 -0.76 -12.18 16 28 N -0.51 -29.97 5.74 -186.37 -1.07 -31.04 16 29 H 0.27 15.18 8.29 -92.71 -0.77 14.41 16 30 H 0.11 5.07 8.06 -2.92 -0.02 5.05 16 31 H 0.14 4.85 8.06 -2.91 -0.02 4.83 16 32 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 33 H 0.41 12.93 6.64 -92.71 -0.62 12.32 16 34 H 0.44 16.02 8.39 -213.32 -1.79 14.23 16 35 H 0.44 11.54 6.84 -213.33 -1.46 10.08 16 36 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 37 H 0.19 -0.82 8.06 -2.91 -0.02 -0.85 16 38 H 0.21 -1.29 8.06 -2.91 -0.02 -1.32 16 39 H 0.19 0.97 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -87.53 343.96 0.70 -86.83 By element: Atomic # 1 Polarization: 42.74 SS G_CDS: -2.70 Total: 40.04 kcal Atomic # 6 Polarization: 24.11 SS G_CDS: 9.18 Total: 33.29 kcal Atomic # 7 Polarization: -169.01 SS G_CDS: -7.76 Total: -176.76 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.05 Total: -27.27 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -87.53 0.70 -86.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664367759.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 282.151 kcal (2) G-P(sol) polarization free energy of solvation -87.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 194.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 195.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds