Wall clock time and date at job start Tue Mar 31 2020 22:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86795 * 120.00237 * 2 1 4 4 H 1.48498 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47244 * 299.99616 * 3 2 1 6 6 H 1.48494 * 109.47018 * 60.00074 * 3 2 1 7 7 C 1.38799 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00282 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99740 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.46929 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00030 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99979 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99886 * 180.02562 * 13 11 10 15 15 H 1.09001 * 110.27490 * 32.91074 * 14 13 11 16 16 C 1.54594 * 110.30564 * 270.71523 * 14 13 11 17 17 C 1.54933 * 102.91997 * 263.04163 * 16 14 13 18 18 N 1.48813 * 103.35205 * 322.69117 * 17 16 14 19 19 C 1.46897 * 111.18681 * 159.50572 * 18 17 16 20 20 C 1.50694 * 109.47194 * 52.66331 * 19 18 17 21 21 C 1.38242 * 120.40915 * 269.72254 * 20 19 18 22 22 N 1.31846 * 120.82037 * 179.67987 * 21 20 19 23 23 C 1.31872 * 121.75093 * 0.63206 * 22 21 20 24 24 C 1.38425 * 120.72473 * 359.65890 * 23 22 21 25 25 F 1.35102 * 120.44120 * 180.02562 * 24 23 22 26 26 C 1.38591 * 120.40630 * 89.99848 * 20 19 18 27 27 C 1.47905 * 105.67450 * 38.97719 * 18 17 16 28 28 H 0.96997 * 119.99484 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47141 * 59.99871 * 10 9 7 30 30 H 1.08991 * 109.47390 * 299.99492 * 10 9 7 31 31 H 0.96996 * 119.99711 * 0.02562 * 13 11 10 32 32 H 1.08999 * 110.72754 * 21.40062 * 16 14 13 33 33 H 1.08998 * 110.72457 * 144.50630 * 16 14 13 34 34 H 1.08998 * 110.66828 * 81.02294 * 17 16 14 35 35 H 1.09004 * 110.66649 * 204.15215 * 17 16 14 36 36 H 1.09000 * 109.47143 * 172.66998 * 19 18 17 37 37 H 1.09011 * 109.46966 * 292.66611 * 19 18 17 38 38 H 1.08001 * 119.58738 * 359.97438 * 21 20 19 39 39 H 1.07999 * 119.64052 * 179.68412 * 23 22 21 40 40 H 1.08003 * 120.79478 * 359.97438 * 26 20 19 41 41 H 1.09002 * 109.91668 * 215.45268 * 27 18 17 42 42 H 1.09002 * 109.91761 * 94.35443 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8918 2.3963 -1.2125 6 1 1.8917 2.3963 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 16 1.1291 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9871 -5.3028 0.0012 12 8 0.7908 -5.5024 0.0011 13 7 2.8438 -6.3433 0.0008 14 6 2.3300 -7.7153 0.0008 15 1 1.3934 -7.7678 -0.5544 16 6 2.1254 -8.2115 1.4506 17 6 3.4237 -9.0093 1.7301 18 7 3.7068 -9.6722 0.4282 19 6 5.1165 -10.0738 0.3324 20 6 5.4888 -10.8930 1.5412 21 6 5.9892 -10.2800 2.6748 22 7 6.3116 -10.9882 3.7392 23 6 6.1837 -12.3004 3.7644 24 6 5.6949 -12.9847 2.6649 25 9 5.5658 -14.3291 2.6972 26 6 5.3390 -12.2707 1.5282 27 6 3.3680 -8.6747 -0.6100 28 1 -0.4849 0.8401 -0.0004 29 1 3.1243 -3.7314 0.8905 30 1 3.1242 -3.7316 -0.8894 31 1 3.8006 -6.1837 0.0004 32 1 2.0345 -7.3698 2.1372 33 1 1.2503 -8.8579 1.5172 34 1 4.2376 -8.3369 2.0014 35 1 3.2589 -9.7506 2.5121 36 1 5.2644 -10.6684 -0.5691 37 1 5.7455 -9.1845 0.2884 38 1 6.1131 -9.2073 2.6903 39 1 6.4630 -12.8473 4.6529 40 1 4.9543 -12.7768 0.6551 41 1 2.9443 -9.1747 -1.4810 42 1 4.2614 -8.1207 -0.8982 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665522911.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:20 Heat of formation + Delta-G solvation = -35.862484 kcal Electronic energy + Delta-G solvation = -25601.900888 eV Core-core repulsion = 21622.728554 eV Total energy + Delta-G solvation = -3979.172334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.45220 -40.90814 -39.87203 -38.34237 -34.96980 -33.24040 -32.45644 -31.89307 -30.67809 -29.59169 -28.03933 -26.16032 -25.48339 -24.35946 -22.88155 -21.48512 -21.26482 -20.13489 -17.93568 -17.83964 -17.80558 -17.41606 -16.69472 -16.55913 -16.28572 -16.00525 -15.10650 -14.87792 -14.83060 -14.63900 -14.39035 -14.14461 -13.96559 -13.81017 -13.60932 -13.18897 -13.08612 -12.87682 -12.57140 -12.41962 -12.16889 -11.86825 -11.70750 -11.56441 -11.18216 -11.09354 -11.04761 -10.78154 -10.33291 -10.12581 -9.83703 -9.50883 -9.43466 -9.10970 -9.01763 -8.85599 -8.26744 -6.53281 -6.24655 -3.95385 0.33465 0.54771 2.92165 3.01315 3.04186 3.19473 3.25672 3.29839 3.44790 3.56033 3.75716 3.86969 4.00766 4.17424 4.20192 4.24680 4.34123 4.49318 4.56207 4.83449 4.85245 4.90513 5.04291 5.08844 5.10736 5.14036 5.25671 5.30487 5.32550 5.52319 5.56113 5.58112 5.69981 5.83378 5.92911 5.93765 6.05700 6.08907 6.25485 6.46319 6.64144 7.27158 7.56912 7.61291 8.32489 8.54492 9.20904 10.82815 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.026460 B = 0.001812 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.929739 B =15449.775265 C =15961.229896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.514 6.514 13 N -0.734 5.734 14 C 0.137 3.863 15 H 0.102 0.898 16 C -0.133 4.133 17 C 0.033 3.967 18 N -0.510 5.510 19 C 0.087 3.913 20 C -0.103 4.103 21 C 0.096 3.904 22 N -0.454 5.454 23 C 0.072 3.928 24 C 0.048 3.952 25 F -0.130 7.130 26 C -0.089 4.089 27 C 0.031 3.969 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.395 0.605 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.161 0.839 39 H 0.167 0.833 40 H 0.150 0.850 41 H 0.094 0.906 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.468 -25.730 2.349 29.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.387 6.387 13 N -0.389 5.389 14 C 0.031 3.969 15 H 0.120 0.880 16 C -0.172 4.172 17 C -0.094 4.094 18 N -0.234 5.234 19 C -0.041 4.041 20 C -0.105 4.105 21 C -0.062 4.062 22 N -0.161 5.161 23 C -0.086 4.086 24 C 0.027 3.973 25 F -0.108 7.108 26 C -0.116 4.116 27 C -0.097 4.097 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.229 0.771 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.178 0.822 39 H 0.184 0.816 40 H 0.168 0.832 41 H 0.112 0.888 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.307 -26.048 3.011 28.966 hybrid contribution 2.623 1.325 -0.630 3.005 sum 14.930 -24.723 2.382 28.979 Atomic orbital electron populations 1.70027 1.05947 1.27380 1.46871 1.24999 0.95039 0.99060 0.94524 0.86111 0.79563 0.81864 0.77925 1.19631 1.20549 1.20552 1.22904 0.94924 0.91633 1.58922 0.90887 1.85415 1.04836 0.96351 1.96712 1.23538 1.06630 0.95404 1.04879 1.20330 0.86568 0.86260 0.74891 1.90710 1.15314 1.85538 1.47177 1.46186 1.09690 1.05104 1.77928 1.21680 0.97998 0.80830 0.96429 0.88016 1.22928 0.97547 1.00035 0.96732 1.23372 0.97324 0.96708 0.92001 1.65047 1.18167 1.36841 1.03382 1.21225 0.89345 0.98213 0.95366 1.20685 0.98981 0.93606 0.97272 1.22857 0.94778 1.00626 0.87898 1.67778 1.14443 1.06489 1.27432 1.22961 0.97425 0.90727 0.97537 1.18834 1.03355 0.78309 0.96848 1.91541 1.93679 1.28772 1.96843 1.21573 0.97960 0.94019 0.98072 1.23202 0.98340 0.92559 0.95636 0.92208 0.89277 0.89249 0.77065 0.90027 0.89859 0.93313 0.90112 0.88921 0.92605 0.82189 0.81558 0.83235 0.88819 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.92 13.22 55.49 0.73 -25.18 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.54 -15.05 9.50 30.94 0.29 -14.76 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -2.98 6.16 36.01 0.22 -2.75 16 11 C 0.53 9.35 7.85 -10.98 -0.09 9.27 16 12 O -0.51 -11.16 15.51 5.56 0.09 -11.07 16 13 N -0.73 -8.79 5.06 -52.49 -0.27 -9.06 16 14 C 0.14 1.44 3.34 -66.57 -0.22 1.22 16 15 H 0.10 1.29 7.56 -51.93 -0.39 0.90 16 16 C -0.13 -1.36 6.79 -24.87 -0.17 -1.53 16 17 C 0.03 0.27 5.00 -1.74 -0.01 0.26 16 18 N -0.51 -3.73 5.40 -231.64 -1.25 -4.98 16 19 C 0.09 0.48 5.21 -4.98 -0.03 0.46 16 20 C -0.10 -0.66 4.61 -104.49 -0.48 -1.14 16 21 C 0.10 0.69 9.56 -17.54 -0.17 0.52 16 22 N -0.45 -3.88 10.36 -13.19 -0.14 -4.02 16 23 C 0.07 0.53 11.17 -17.47 -0.20 0.33 16 24 C 0.05 0.35 7.35 -39.28 -0.29 0.06 16 25 F -0.13 -1.03 17.28 2.25 0.04 -0.99 16 26 C -0.09 -0.59 9.85 -39.22 -0.39 -0.97 16 27 C 0.03 0.23 6.46 -2.75 -0.02 0.21 16 28 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 30 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 31 H 0.40 3.61 8.34 -40.82 -0.34 3.27 16 32 H 0.08 0.97 8.05 -51.93 -0.42 0.55 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.36 7.14 -51.93 -0.37 -0.01 16 35 H 0.08 0.69 7.77 -51.93 -0.40 0.29 16 36 H 0.09 0.43 8.10 -51.93 -0.42 0.01 16 37 H 0.06 0.26 7.76 -51.92 -0.40 -0.14 16 38 H 0.16 0.91 7.42 -52.49 -0.39 0.52 16 39 H 0.17 0.86 8.06 -52.49 -0.42 0.43 16 40 H 0.15 0.77 8.06 -52.48 -0.42 0.35 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.36 7.05 -51.93 -0.37 -0.01 16 LS Contribution 370.59 15.07 5.58 5.58 Total: -1.00 -34.31 370.59 -9.66 -43.97 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.59 Total: 0.23 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -1.63 Total: -6.85 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: -0.92 Total: -43.24 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 9 Polarization: -1.03 SS G_CDS: 0.04 Total: -0.99 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.31 -9.66 -43.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665522911.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.106 kcal (2) G-P(sol) polarization free energy of solvation -34.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds