Wall clock time and date at job start Tue Mar 31 2020 22:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86795 * 120.00237 * 2 1 4 4 H 1.48498 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47244 * 299.99616 * 3 2 1 6 6 H 1.48494 * 109.47018 * 60.00074 * 3 2 1 7 7 C 1.38799 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00282 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99740 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.46929 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00030 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99979 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99886 * 180.02562 * 13 11 10 15 15 H 1.09001 * 110.27490 * 32.91074 * 14 13 11 16 16 C 1.54594 * 110.30564 * 270.71523 * 14 13 11 17 17 C 1.54933 * 102.91997 * 263.04163 * 16 14 13 18 18 N 1.48813 * 103.35205 * 322.69117 * 17 16 14 19 19 C 1.46897 * 111.18681 * 159.50572 * 18 17 16 20 20 C 1.50694 * 109.47194 * 52.66331 * 19 18 17 21 21 C 1.38242 * 120.40915 * 269.72254 * 20 19 18 22 22 N 1.31846 * 120.82037 * 179.67987 * 21 20 19 23 23 C 1.31872 * 121.75093 * 0.63206 * 22 21 20 24 24 C 1.38425 * 120.72473 * 359.65890 * 23 22 21 25 25 F 1.35102 * 120.44120 * 180.02562 * 24 23 22 26 26 C 1.38591 * 120.40630 * 89.99848 * 20 19 18 27 27 C 1.47905 * 105.67450 * 38.97719 * 18 17 16 28 28 H 0.96997 * 119.99484 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47141 * 59.99871 * 10 9 7 30 30 H 1.08991 * 109.47390 * 299.99492 * 10 9 7 31 31 H 0.96996 * 119.99711 * 0.02562 * 13 11 10 32 32 H 1.08999 * 110.72754 * 21.40062 * 16 14 13 33 33 H 1.08998 * 110.72457 * 144.50630 * 16 14 13 34 34 H 1.08998 * 110.66828 * 81.02294 * 17 16 14 35 35 H 1.09004 * 110.66649 * 204.15215 * 17 16 14 36 36 H 1.09000 * 109.47143 * 172.66998 * 19 18 17 37 37 H 1.09011 * 109.46966 * 292.66611 * 19 18 17 38 38 H 1.08001 * 119.58738 * 359.97438 * 21 20 19 39 39 H 1.07999 * 119.64052 * 179.68412 * 23 22 21 40 40 H 1.08003 * 120.79478 * 359.97438 * 26 20 19 41 41 H 1.09002 * 109.91668 * 215.45268 * 27 18 17 42 42 H 1.09002 * 109.91761 * 94.35443 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8918 2.3963 -1.2125 6 1 1.8917 2.3963 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 16 1.1291 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9871 -5.3028 0.0012 12 8 0.7908 -5.5024 0.0011 13 7 2.8438 -6.3433 0.0008 14 6 2.3300 -7.7153 0.0008 15 1 1.3934 -7.7678 -0.5544 16 6 2.1254 -8.2115 1.4506 17 6 3.4237 -9.0093 1.7301 18 7 3.7068 -9.6722 0.4282 19 6 5.1165 -10.0738 0.3324 20 6 5.4888 -10.8930 1.5412 21 6 5.9892 -10.2800 2.6748 22 7 6.3116 -10.9882 3.7392 23 6 6.1837 -12.3004 3.7644 24 6 5.6949 -12.9847 2.6649 25 9 5.5658 -14.3291 2.6972 26 6 5.3390 -12.2707 1.5282 27 6 3.3680 -8.6747 -0.6100 28 1 -0.4849 0.8401 -0.0004 29 1 3.1243 -3.7314 0.8905 30 1 3.1242 -3.7316 -0.8894 31 1 3.8006 -6.1837 0.0004 32 1 2.0345 -7.3698 2.1372 33 1 1.2503 -8.8579 1.5172 34 1 4.2376 -8.3369 2.0014 35 1 3.2589 -9.7506 2.5121 36 1 5.2644 -10.6684 -0.5691 37 1 5.7455 -9.1845 0.2884 38 1 6.1131 -9.2073 2.6903 39 1 6.4630 -12.8473 4.6529 40 1 4.9543 -12.7768 0.6551 41 1 2.9443 -9.1747 -1.4810 42 1 4.2614 -8.1207 -0.8982 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665522911.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:19 Heat of formation + Delta-G solvation = -60.905635 kcal Electronic energy + Delta-G solvation = -25602.986840 eV Core-core repulsion = 21622.728554 eV Total energy + Delta-G solvation = -3980.258286 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.01589 -41.49921 -40.87075 -39.34544 -35.85504 -34.58289 -34.06480 -32.53904 -31.47902 -30.69831 -28.95750 -27.65752 -26.74175 -24.88341 -23.45177 -22.49856 -21.95731 -21.21335 -19.83847 -18.40307 -18.36785 -17.94535 -17.94075 -17.42531 -17.06991 -16.87876 -16.75326 -16.30760 -16.12707 -15.49797 -15.27243 -14.94421 -14.74551 -14.65286 -14.45149 -14.35051 -14.11611 -13.74906 -13.65038 -13.42581 -13.15589 -12.93026 -12.78723 -12.75324 -12.62153 -12.43576 -12.34586 -11.96461 -11.70197 -11.15778 -10.94898 -10.84403 -10.64878 -10.26184 -10.13315 -9.99327 -9.42544 -8.66009 -8.34712 -6.12361 -0.17395 0.04145 1.27534 1.41525 1.47690 1.58343 1.61689 2.22850 2.28364 2.50275 2.94660 2.99690 3.08012 3.33118 3.36861 3.49243 3.56056 3.74215 3.79027 3.86510 3.99326 4.04096 4.17260 4.26620 4.30947 4.35146 4.40858 4.51974 4.58141 4.67474 4.78991 4.83466 4.87459 4.95747 5.02505 5.07127 5.13193 5.42465 5.43641 5.56802 5.78240 5.93984 6.20261 6.49856 6.75843 7.06993 7.25904 8.74664 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.026460 B = 0.001812 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.929739 B =15449.775265 C =15961.229896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.130 4.130 11 C 0.536 3.464 12 O -0.563 6.563 13 N -0.705 5.705 14 C 0.133 3.867 15 H 0.078 0.922 16 C -0.134 4.134 17 C 0.044 3.956 18 N -0.515 5.515 19 C 0.088 3.912 20 C -0.101 4.101 21 C 0.092 3.908 22 N -0.480 5.480 23 C 0.065 3.935 24 C 0.037 3.963 25 F -0.136 7.136 26 C -0.090 4.090 27 C 0.042 3.958 28 H 0.271 0.729 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.415 0.585 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.174 0.826 39 H 0.181 0.819 40 H 0.164 0.836 41 H 0.102 0.898 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.433 -26.091 1.752 31.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.820 3.180 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.692 4.692 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.281 4.281 11 C 0.322 3.678 12 O -0.441 6.441 13 N -0.360 5.360 14 C 0.028 3.972 15 H 0.096 0.904 16 C -0.173 4.173 17 C -0.084 4.084 18 N -0.240 5.240 19 C -0.040 4.040 20 C -0.104 4.104 21 C -0.066 4.066 22 N -0.187 5.187 23 C -0.093 4.093 24 C 0.015 3.985 25 F -0.115 7.115 26 C -0.116 4.116 27 C -0.086 4.086 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.252 0.748 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.091 0.909 38 H 0.191 0.809 39 H 0.198 0.802 40 H 0.181 0.819 41 H 0.120 0.880 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 15.334 -26.454 2.415 30.672 hybrid contribution 1.736 1.287 -0.428 2.203 sum 17.069 -25.167 1.986 30.474 Atomic orbital electron populations 1.70191 1.07971 1.28516 1.48116 1.26130 0.95966 1.03343 0.93814 0.84906 0.78658 0.76378 0.78022 1.17943 1.19978 1.20056 1.23239 0.95354 0.91998 1.58654 0.89851 1.85607 1.10645 0.99288 1.97041 1.23377 1.03494 0.94407 1.06798 1.20047 0.86265 0.86630 0.74831 1.90703 1.17469 1.86038 1.49913 1.45886 1.10031 1.04562 1.75512 1.21789 0.98348 0.80309 0.96789 0.90395 1.22856 0.98849 0.99597 0.95984 1.23246 0.96258 0.96441 0.92420 1.65048 1.19757 1.36494 1.02678 1.21316 0.88247 0.98946 0.95453 1.20752 0.98685 0.93535 0.97392 1.23146 0.94375 1.01295 0.87802 1.67793 1.15508 1.07031 1.28383 1.23204 0.97214 0.90658 0.98175 1.18945 1.04039 0.78129 0.97374 1.91523 1.93819 1.29233 1.96911 1.21801 0.97322 0.94299 0.98217 1.23118 0.98049 0.91955 0.95506 0.92030 0.87282 0.87110 0.74791 0.91956 0.90506 0.92058 0.90599 0.87374 0.90907 0.80865 0.80231 0.81869 0.87974 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.60 13.22 21.65 0.29 -55.32 16 2 C 0.01 0.68 5.49 84.86 0.47 1.15 16 3 Si 1.00 43.08 29.55 68.60 2.03 45.11 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.54 -30.60 9.50 67.95 0.65 -29.96 16 8 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 9 S -0.15 -8.33 20.57 -56.49 -1.16 -9.50 16 10 C -0.13 -4.87 6.16 71.24 0.44 -4.43 16 11 C 0.54 18.48 7.85 87.66 0.69 19.17 16 12 O -0.56 -25.11 15.51 -3.03 -0.05 -25.15 16 13 N -0.71 -15.45 5.06 -438.36 -2.22 -17.66 16 14 C 0.13 2.62 3.34 45.87 0.15 2.78 16 15 H 0.08 1.97 7.56 -2.39 -0.02 1.95 16 16 C -0.13 -2.62 6.79 31.80 0.22 -2.41 16 17 C 0.04 0.61 5.00 86.59 0.43 1.04 16 18 N -0.52 -5.94 5.40 -886.79 -4.78 -10.73 16 19 C 0.09 0.64 5.21 85.56 0.45 1.09 16 20 C -0.10 -1.03 4.61 -19.78 -0.09 -1.12 16 21 C 0.09 1.11 9.56 84.69 0.81 1.92 16 22 N -0.48 -7.58 10.36 -195.65 -2.03 -9.60 16 23 C 0.07 0.90 11.17 84.73 0.95 1.85 16 24 C 0.04 0.49 7.35 22.47 0.17 0.66 16 25 F -0.14 -2.05 17.28 44.97 0.78 -1.28 16 26 C -0.09 -1.00 9.85 22.51 0.22 -0.77 16 27 C 0.04 0.49 6.46 86.44 0.56 1.05 16 28 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 30 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 31 H 0.41 6.05 8.34 -92.71 -0.77 5.28 16 32 H 0.06 1.47 8.05 -2.39 -0.02 1.45 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.06 0.71 7.14 -2.39 -0.02 0.69 16 35 H 0.08 1.17 7.77 -2.38 -0.02 1.15 16 36 H 0.11 0.53 8.10 -2.39 -0.02 0.51 16 37 H 0.07 0.34 7.76 -2.38 -0.02 0.32 16 38 H 0.17 1.48 7.42 -2.91 -0.02 1.46 16 39 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 40 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 41 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.08 0.62 7.05 -2.39 -0.02 0.61 16 Total: -1.00 -77.31 370.59 -0.77 -78.08 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.28 Total: 14.04 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 6.10 Total: -7.99 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -8.74 Total: -93.31 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.05 Total: -25.15 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.78 Total: -1.28 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.50 kcal Total: -77.31 -0.77 -78.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665522911.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.172 kcal (2) G-P(sol) polarization free energy of solvation -77.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds