Wall clock time and date at job start Tue Mar 31 2020 22:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 N 1.49353 * 108.33111 * 2 1 4 4 O 1.42097 * 114.64784 * 238.89500 * 2 1 3 5 5 N 1.65602 * 108.32867 * 117.78862 * 2 1 3 6 6 C 1.46965 * 120.58991 * 179.97438 * 5 2 1 7 7 C 1.53368 * 108.63568 * 235.25007 * 6 5 2 8 8 N 1.46963 * 108.63436 * 310.57693 * 7 6 5 9 9 S 1.65598 * 120.59737 * 235.20435 * 8 7 6 10 10 O 1.42104 * 104.27651 * 333.93039 * 9 8 7 11 11 O 1.42095 * 104.28128 * 206.07450 * 9 8 7 12 12 C 1.81399 * 104.45041 * 89.99848 * 9 8 7 13 13 C 1.52997 * 109.47147 * 180.02562 * 12 9 8 14 14 C 1.53006 * 109.47127 * 180.02562 * 13 12 9 15 15 C 1.50698 * 109.47184 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99819 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00046 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00192 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47454 * 59.99696 * 19 17 15 21 21 H 1.48506 * 109.47297 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47261 * 299.99689 * 19 17 15 23 23 C 1.46965 * 118.81172 * 55.47706 * 8 7 6 24 24 C 1.46963 * 120.59740 * 0.02562 * 5 2 1 25 25 H 1.08996 * 109.47094 * 302.21603 * 1 2 3 26 26 H 1.09002 * 109.47128 * 62.20937 * 1 2 3 27 27 H 1.08999 * 109.47133 * 182.20826 * 1 2 3 28 28 H 0.97001 * 119.99945 * 55.06639 * 3 2 1 29 29 H 1.08997 * 109.60844 * 115.50376 * 6 5 2 30 30 H 1.09007 * 109.75078 * 355.07783 * 6 5 2 31 31 H 1.09000 * 109.61229 * 190.83409 * 7 6 5 32 32 H 1.08997 * 109.74925 * 70.40329 * 7 6 5 33 33 H 1.08996 * 109.47243 * 60.00524 * 12 9 8 34 34 H 1.09001 * 109.47190 * 300.00108 * 12 9 8 35 35 H 1.09001 * 109.47502 * 60.00399 * 13 12 9 36 36 H 1.09001 * 109.47289 * 300.00196 * 13 12 9 37 37 H 1.09001 * 109.47002 * 299.99574 * 14 13 12 38 38 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 39 39 H 0.96996 * 120.00505 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.60814 * 64.26741 * 23 8 7 41 41 H 1.08998 * 109.61392 * 184.77623 * 23 8 7 42 42 H 1.08995 * 109.61195 * 244.49740 * 24 5 2 43 43 H 1.09000 * 109.60893 * 4.83458 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 7 2.2838 1.4177 0.0000 4 8 2.4067 -0.6672 -1.1058 5 7 2.3348 -0.7329 1.3907 6 6 3.7710 -0.8789 1.6666 7 6 4.0735 -2.3612 1.9182 8 7 3.1079 -2.8777 2.8983 9 16 3.6286 -3.6116 4.2885 10 8 4.9127 -4.1213 3.9559 11 8 2.5643 -4.4831 4.6446 12 6 3.7721 -2.2586 5.4882 13 6 4.2521 -2.8155 6.8300 14 6 4.3725 -1.6743 7.8421 15 6 4.8458 -2.2228 9.1635 16 1 5.0409 -3.2796 9.2709 17 6 5.0289 -1.3755 10.2358 18 7 4.7909 -0.0887 10.1052 19 14 5.6150 -2.0555 11.8739 20 1 6.9405 -2.7010 11.6963 21 1 5.7320 -0.9479 12.8563 22 1 4.6389 -3.0580 12.3715 23 6 1.6717 -2.7367 2.6198 24 6 1.3693 -1.2499 2.3706 25 1 -0.3633 0.5478 0.8694 26 1 -0.3633 0.4791 -0.9091 27 1 -0.3633 -1.0269 0.0396 28 1 1.9797 2.0294 0.6887 29 1 4.0349 -0.2967 2.5494 30 1 4.3480 -0.5279 0.8109 31 1 5.0849 -2.4668 2.3106 32 1 3.9826 -2.9191 0.9862 33 1 2.7996 -1.7839 5.6185 34 1 4.4892 -1.5235 5.1229 35 1 5.2247 -3.2899 6.6995 36 1 3.5353 -3.5508 7.1956 37 1 5.0891 -0.9388 7.4768 38 1 3.3997 -1.2003 7.9726 39 1 4.9194 0.5073 10.8596 40 1 1.4117 -3.3187 1.7356 41 1 1.0966 -3.0903 3.4756 42 1 1.4617 -0.6942 3.3036 43 1 0.3576 -1.1419 1.9793 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665930097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:39 Heat of formation + Delta-G solvation = -64.083567 kcal Electronic energy + Delta-G solvation = -26218.514084 eV Core-core repulsion = 22361.189154 eV Total energy + Delta-G solvation = -3857.324930 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.88361 -37.09452 -36.61062 -35.87423 -34.74566 -34.06324 -32.50333 -32.24233 -32.07848 -29.71743 -27.88247 -26.69173 -24.37992 -23.81103 -21.83433 -20.58406 -19.60705 -18.76518 -18.20881 -17.06110 -16.84193 -16.69168 -16.38833 -15.90432 -15.84877 -15.21090 -15.09545 -14.70266 -14.54933 -14.35535 -14.25260 -13.86850 -13.69880 -12.99005 -12.85510 -12.64278 -12.36534 -12.31121 -12.27734 -12.03961 -11.93611 -11.87810 -11.84380 -11.61647 -11.36309 -11.14361 -10.93840 -10.93296 -10.53449 -10.30261 -10.01600 -10.01561 -9.72902 -9.43693 -9.21588 -8.86392 -8.45150 -6.10354 -4.13695 -0.38507 0.30100 2.28785 2.61494 3.25626 3.28828 3.33024 3.36046 3.69416 3.88408 3.93914 4.12757 4.29908 4.38398 4.42729 4.47433 4.56417 4.72149 4.83485 4.89131 4.97841 5.09067 5.09747 5.16028 5.25574 5.26183 5.29837 5.47102 5.69589 5.79730 5.87521 5.97983 6.15721 6.29300 6.36960 6.80075 6.90302 7.50554 7.60365 7.87202 8.27525 8.92259 9.51356 11.00771 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018100 B = 0.002718 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.589929 B =10300.782051 C =11108.153471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.668 4.668 2 S 2.505 3.495 3 N -1.233 6.233 4 O -0.928 6.928 5 N -1.004 6.004 6 C 0.118 3.882 7 C 0.105 3.895 8 N -1.001 6.001 9 S 2.595 3.405 10 O -0.956 6.956 11 O -0.959 6.959 12 C -0.607 4.607 13 C -0.106 4.106 14 C 0.032 3.968 15 C -0.528 4.528 16 H 0.057 0.943 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.106 3.894 24 C 0.086 3.914 25 H 0.126 0.874 26 H 0.133 0.867 27 H 0.119 0.881 28 H 0.384 0.616 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.262 0.738 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.085 0.915 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.043 0.827 -19.805 22.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.822 4.822 2 S 2.595 3.405 3 N -1.052 6.052 4 O -0.909 6.909 5 N -0.837 5.837 6 C -0.009 4.009 7 C -0.022 4.022 8 N -0.838 5.838 9 S 2.693 3.307 10 O -0.947 6.947 11 O -0.949 6.949 12 C -0.739 4.739 13 C -0.146 4.146 14 C -0.006 4.006 15 C -0.566 4.566 16 H 0.076 0.924 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.022 4.022 24 C -0.042 4.042 25 H 0.144 0.856 26 H 0.151 0.849 27 H 0.138 0.862 28 H 0.206 0.794 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.123 0.877 32 H 0.097 0.903 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.123 0.877 42 H 0.104 0.896 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.007 -0.209 -20.920 23.191 hybrid contribution -0.844 0.564 1.989 2.233 sum -10.851 0.354 -18.931 21.824 Atomic orbital electron populations 1.30650 1.29221 1.10757 1.11567 1.10738 0.77486 0.77259 0.74989 1.72855 1.64036 1.17697 1.50635 1.93533 1.72890 1.75811 1.48616 1.58085 1.12599 1.76817 1.36230 1.21773 0.79429 0.96743 1.02966 1.21825 0.92806 0.93912 0.93699 1.57820 1.12417 1.77295 1.36238 1.05606 0.74071 0.76797 0.74252 1.93572 1.41630 1.77437 1.82028 1.93560 1.56035 1.62084 1.83229 1.30598 1.10901 1.18326 1.14048 1.21512 1.00471 1.01536 0.91041 1.19045 0.97540 0.91991 0.92022 1.21212 1.45394 0.94406 0.95631 0.92431 1.25009 0.95355 0.94837 0.99086 1.69936 1.48945 1.02922 1.31622 0.86616 0.79461 0.78526 0.83196 1.20091 1.21222 1.20115 1.21824 0.81121 0.95609 1.03621 1.22176 0.91544 0.95737 0.94718 0.85562 0.84877 0.86202 0.79407 0.90070 0.88540 0.87678 0.90276 0.85527 0.85405 0.91575 0.91628 0.96127 0.96187 0.92801 0.90625 0.87668 0.89650 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -1.99 9.24 101.05 0.93 -1.06 16 2 S 2.50 17.63 5.32 -107.50 -0.57 17.06 16 3 N -1.23 -11.05 14.07 60.35 0.85 -10.20 16 4 O -0.93 -11.47 18.13 -35.23 -0.64 -12.11 16 5 N -1.00 -6.47 3.32 -113.03 -0.38 -6.85 16 6 C 0.12 0.91 6.70 -3.60 -0.02 0.89 16 7 C 0.10 0.94 6.48 -3.60 -0.02 0.92 16 8 N -1.00 -9.92 3.19 -113.04 -0.36 -10.29 16 9 S 2.60 35.16 5.42 -107.50 -0.58 34.58 16 10 O -0.96 -15.80 16.70 -57.54 -0.96 -16.76 16 11 O -0.96 -15.36 16.69 -57.54 -0.96 -16.32 16 12 C -0.61 -8.43 6.18 37.16 0.23 -8.20 16 13 C -0.11 -2.04 5.16 -26.73 -0.14 -2.18 16 14 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 15 C -0.53 -14.52 9.11 -34.44 -0.31 -14.83 16 16 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -26.00 13.29 55.43 0.74 -25.27 16 19 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 C 0.11 0.77 6.52 -3.39 -0.02 0.74 16 24 C 0.09 0.41 6.66 -3.39 -0.02 0.39 16 25 H 0.13 0.10 7.91 -51.93 -0.41 -0.31 16 26 H 0.13 0.39 8.14 -51.92 -0.42 -0.03 16 27 H 0.12 0.20 7.72 -51.92 -0.40 -0.20 16 28 H 0.38 2.51 8.92 -21.58 -0.19 2.31 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.10 0.75 7.91 -51.93 -0.41 0.34 16 31 H 0.11 0.94 7.06 -51.93 -0.37 0.57 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.13 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.13 1.57 8.14 -51.92 -0.42 1.15 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.11 0.73 7.05 -51.93 -0.37 0.36 16 42 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.12 5.58 -51.93 -0.29 -0.17 16 LS Contribution 371.24 15.07 5.59 5.59 Total: -1.00 -40.02 371.24 -8.54 -48.55 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -6.63 Total: -3.04 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: 0.38 Total: -21.13 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.85 Total: -52.60 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -2.56 Total: -45.19 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 52.79 SS G_CDS: -1.15 Total: 51.63 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -40.02 -8.54 -48.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665930097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.531 kcal (2) G-P(sol) polarization free energy of solvation -40.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds