Wall clock time and date at job start Tue Mar 31 2020 22:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 N 1.49353 * 108.33111 * 2 1 4 4 O 1.42097 * 114.64784 * 238.89500 * 2 1 3 5 5 N 1.65602 * 108.32867 * 117.78862 * 2 1 3 6 6 C 1.46965 * 120.58991 * 179.97438 * 5 2 1 7 7 C 1.53368 * 108.63568 * 235.25007 * 6 5 2 8 8 N 1.46963 * 108.63436 * 310.57693 * 7 6 5 9 9 S 1.65598 * 120.59737 * 235.20435 * 8 7 6 10 10 O 1.42104 * 104.27651 * 333.93039 * 9 8 7 11 11 O 1.42095 * 104.28128 * 206.07450 * 9 8 7 12 12 C 1.81399 * 104.45041 * 89.99848 * 9 8 7 13 13 C 1.52997 * 109.47147 * 180.02562 * 12 9 8 14 14 C 1.53006 * 109.47127 * 180.02562 * 13 12 9 15 15 C 1.50698 * 109.47184 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99819 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00046 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00192 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47454 * 59.99696 * 19 17 15 21 21 H 1.48506 * 109.47297 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47261 * 299.99689 * 19 17 15 23 23 C 1.46965 * 118.81172 * 55.47706 * 8 7 6 24 24 C 1.46963 * 120.59740 * 0.02562 * 5 2 1 25 25 H 1.08996 * 109.47094 * 302.21603 * 1 2 3 26 26 H 1.09002 * 109.47128 * 62.20937 * 1 2 3 27 27 H 1.08999 * 109.47133 * 182.20826 * 1 2 3 28 28 H 0.97001 * 119.99945 * 55.06639 * 3 2 1 29 29 H 1.08997 * 109.60844 * 115.50376 * 6 5 2 30 30 H 1.09007 * 109.75078 * 355.07783 * 6 5 2 31 31 H 1.09000 * 109.61229 * 190.83409 * 7 6 5 32 32 H 1.08997 * 109.74925 * 70.40329 * 7 6 5 33 33 H 1.08996 * 109.47243 * 60.00524 * 12 9 8 34 34 H 1.09001 * 109.47190 * 300.00108 * 12 9 8 35 35 H 1.09001 * 109.47502 * 60.00399 * 13 12 9 36 36 H 1.09001 * 109.47289 * 300.00196 * 13 12 9 37 37 H 1.09001 * 109.47002 * 299.99574 * 14 13 12 38 38 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 39 39 H 0.96996 * 120.00505 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.60814 * 64.26741 * 23 8 7 41 41 H 1.08998 * 109.61392 * 184.77623 * 23 8 7 42 42 H 1.08995 * 109.61195 * 244.49740 * 24 5 2 43 43 H 1.09000 * 109.60893 * 4.83458 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 7 2.2838 1.4177 0.0000 4 8 2.4067 -0.6672 -1.1058 5 7 2.3348 -0.7329 1.3907 6 6 3.7710 -0.8789 1.6666 7 6 4.0735 -2.3612 1.9182 8 7 3.1079 -2.8777 2.8983 9 16 3.6286 -3.6116 4.2885 10 8 4.9127 -4.1213 3.9559 11 8 2.5643 -4.4831 4.6446 12 6 3.7721 -2.2586 5.4882 13 6 4.2521 -2.8155 6.8300 14 6 4.3725 -1.6743 7.8421 15 6 4.8458 -2.2228 9.1635 16 1 5.0409 -3.2796 9.2709 17 6 5.0289 -1.3755 10.2358 18 7 4.7909 -0.0887 10.1052 19 14 5.6150 -2.0555 11.8739 20 1 6.9405 -2.7010 11.6963 21 1 5.7320 -0.9479 12.8563 22 1 4.6389 -3.0580 12.3715 23 6 1.6717 -2.7367 2.6198 24 6 1.3693 -1.2499 2.3706 25 1 -0.3633 0.5478 0.8694 26 1 -0.3633 0.4791 -0.9091 27 1 -0.3633 -1.0269 0.0396 28 1 1.9797 2.0294 0.6887 29 1 4.0349 -0.2967 2.5494 30 1 4.3480 -0.5279 0.8109 31 1 5.0849 -2.4668 2.3106 32 1 3.9826 -2.9191 0.9862 33 1 2.7996 -1.7839 5.6185 34 1 4.4892 -1.5235 5.1229 35 1 5.2247 -3.2899 6.6995 36 1 3.5353 -3.5508 7.1956 37 1 5.0891 -0.9388 7.4768 38 1 3.3997 -1.2003 7.9726 39 1 4.9194 0.5073 10.8596 40 1 1.4117 -3.3187 1.7356 41 1 1.0966 -3.0903 3.4756 42 1 1.4617 -0.6942 3.3036 43 1 0.3576 -1.1419 1.9793 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665930097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:39 Heat of formation + Delta-G solvation = -98.154888 kcal Electronic energy + Delta-G solvation = -26219.991527 eV Core-core repulsion = 22361.189154 eV Total energy + Delta-G solvation = -3858.802373 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.49169 -38.28615 -37.32670 -37.07535 -36.45867 -34.72765 -34.15323 -33.06670 -32.61796 -30.04796 -29.64526 -27.34351 -25.61286 -24.94774 -22.76241 -21.97964 -20.38067 -19.49550 -19.07518 -18.58808 -17.76067 -17.51303 -17.25667 -17.17695 -16.52067 -16.46354 -16.11122 -15.69829 -15.50199 -15.32792 -14.96093 -14.49256 -14.16780 -14.09642 -14.02527 -13.71828 -13.58904 -13.51521 -13.20919 -13.07692 -13.00060 -12.98172 -12.73539 -12.68701 -12.64736 -12.54419 -12.29159 -12.17415 -11.85088 -11.73909 -11.38663 -11.18486 -10.80893 -10.56432 -10.50218 -10.22559 -9.53342 -8.22362 -6.32989 -0.87141 -0.79247 1.40720 1.42541 1.50482 1.58550 1.91562 2.40021 2.79783 2.81649 3.10879 3.11668 3.23561 3.42465 3.73537 3.86967 3.95736 3.97352 4.15688 4.18207 4.22624 4.26691 4.31756 4.40172 4.58149 4.62957 4.65739 4.71006 4.93825 4.97063 4.99062 5.06482 5.12881 5.25828 5.46134 5.48427 5.53767 5.64752 5.80235 6.20622 6.50493 6.82552 7.36340 8.88664 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018100 B = 0.002718 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.589929 B =10300.782051 C =11108.153471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.644 4.644 2 S 2.514 3.486 3 N -1.284 6.284 4 O -0.991 6.991 5 N -1.001 6.001 6 C 0.116 3.884 7 C 0.100 3.900 8 N -0.994 5.994 9 S 2.620 3.380 10 O -0.990 6.990 11 O -0.983 6.983 12 C -0.605 4.605 13 C -0.107 4.107 14 C 0.034 3.966 15 C -0.554 4.554 16 H 0.058 0.942 17 C 0.005 3.995 18 N -0.928 5.928 19 Si 0.959 3.041 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.267 1.267 23 C 0.089 3.911 24 C 0.081 3.919 25 H 0.160 0.840 26 H 0.141 0.859 27 H 0.144 0.856 28 H 0.391 0.609 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.151 0.849 34 H 0.144 0.856 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.002 0.998 38 H 0.006 0.994 39 H 0.265 0.735 40 H 0.087 0.913 41 H 0.111 0.889 42 H 0.098 0.902 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.155 0.820 -19.800 23.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.803 4.803 2 S 2.610 3.390 3 N -1.104 6.104 4 O -0.972 6.972 5 N -0.833 5.833 6 C -0.012 4.012 7 C -0.026 4.026 8 N -0.832 5.832 9 S 2.717 3.283 10 O -0.980 6.980 11 O -0.973 6.973 12 C -0.736 4.736 13 C -0.146 4.146 14 C -0.005 4.005 15 C -0.592 4.592 16 H 0.077 0.923 17 C -0.193 4.193 18 N -0.568 5.568 19 Si 0.784 3.216 20 H -0.194 1.194 21 H -0.207 1.207 22 H -0.192 1.192 23 C -0.037 4.037 24 C -0.047 4.047 25 H 0.178 0.822 26 H 0.159 0.841 27 H 0.162 0.838 28 H 0.215 0.785 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.169 0.831 34 H 0.162 0.838 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.021 0.979 38 H 0.024 0.976 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.129 0.871 42 H 0.116 0.884 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.076 -0.216 -20.902 24.141 hybrid contribution -0.327 0.553 1.948 2.051 sum -12.403 0.338 -18.954 22.654 Atomic orbital electron populations 1.30419 1.22926 1.13193 1.13730 1.09785 0.79358 0.75938 0.73946 1.72782 1.67435 1.18833 1.51302 1.93465 1.75812 1.76685 1.51257 1.57996 1.12306 1.76737 1.36307 1.21734 0.80539 0.95708 1.03209 1.21932 0.92612 0.94882 0.93209 1.57499 1.14020 1.77055 1.34660 1.04631 0.72894 0.76301 0.74491 1.93526 1.43458 1.78324 1.82680 1.93522 1.56604 1.63134 1.84044 1.30537 1.12543 1.19055 1.11415 1.21310 1.00750 0.99845 0.92678 1.18934 0.95926 0.93141 0.92462 1.21724 1.45436 0.94710 0.97331 0.92332 1.25882 0.95457 0.95137 1.02851 1.70044 1.49917 1.04087 1.32766 0.85589 0.79199 0.78079 0.78757 1.19426 1.20650 1.19202 1.22226 0.79150 0.97884 1.04421 1.22475 0.93094 0.93798 0.95285 0.82156 0.84116 0.83790 0.78537 0.89070 0.89141 0.87994 0.90350 0.83120 0.83805 0.91990 0.91581 0.97939 0.97563 0.92626 0.89520 0.87083 0.88413 0.84815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -0.92 9.24 113.37 1.05 0.13 16 2 S 2.51 31.35 5.32 -56.49 -0.30 31.05 16 3 N -1.28 -22.22 14.07 37.02 0.52 -21.70 16 4 O -0.99 -24.58 18.13 -148.98 -2.70 -27.29 16 5 N -1.00 -10.77 3.32 -511.53 -1.70 -12.47 16 6 C 0.12 1.69 6.70 86.41 0.58 2.27 16 7 C 0.10 1.75 6.48 86.41 0.56 2.31 16 8 N -0.99 -18.18 3.19 -511.53 -1.63 -19.82 16 9 S 2.62 68.71 5.42 -56.49 -0.31 68.40 16 10 O -0.99 -32.65 16.70 -127.65 -2.13 -34.78 16 11 O -0.98 -30.47 16.69 -127.65 -2.13 -32.60 16 12 C -0.60 -16.12 6.18 71.98 0.44 -15.68 16 13 C -0.11 -4.09 5.16 30.60 0.16 -3.93 16 14 C 0.03 1.66 4.97 29.85 0.15 1.81 16 15 C -0.55 -30.73 9.11 25.60 0.23 -30.50 16 16 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 17 C 0.01 0.29 5.46 84.65 0.46 0.75 16 18 N -0.93 -54.35 13.29 21.45 0.28 -54.06 16 19 Si 0.96 43.30 29.54 68.60 2.03 45.33 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 C 0.09 1.05 6.52 86.55 0.56 1.61 16 24 C 0.08 0.46 6.66 86.55 0.58 1.04 16 25 H 0.16 -0.73 7.91 -2.39 -0.02 -0.74 16 26 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 27 H 0.14 -0.33 7.72 -2.39 -0.02 -0.35 16 28 H 0.39 4.75 8.92 -104.94 -0.94 3.82 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 1.44 7.91 -2.38 -0.02 1.42 16 31 H 0.10 1.83 7.06 -2.39 -0.02 1.81 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.15 3.25 8.14 -2.39 -0.02 3.23 16 34 H 0.14 3.36 8.14 -2.39 -0.02 3.34 16 35 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 40 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.11 1.22 7.05 -2.39 -0.02 1.20 16 42 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.13 -0.40 5.58 -2.39 -0.01 -0.41 16 Total: -1.00 -89.12 371.24 -3.22 -92.35 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: 0.07 Total: 5.76 kcal Atomic # 6 Polarization: -44.95 SS G_CDS: 4.77 Total: -40.18 kcal Atomic # 7 Polarization: -105.52 SS G_CDS: -2.53 Total: -108.04 kcal Atomic # 8 Polarization: -87.70 SS G_CDS: -6.96 Total: -94.66 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: 100.06 SS G_CDS: -0.61 Total: 99.45 kcal Total: -89.12 -3.22 -92.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665930097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.810 kcal (2) G-P(sol) polarization free energy of solvation -89.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds