Wall clock time and date at job start Tue Mar 31 2020 22:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 N 1.49350 * 108.33135 * 2 1 4 4 O 1.42100 * 114.64829 * 121.10530 * 2 1 3 5 5 N 1.65602 * 108.32867 * 242.21090 * 2 1 3 6 6 C 1.46965 * 120.58991 * 179.97438 * 5 2 1 7 7 C 1.53368 * 108.63568 * 235.25007 * 6 5 2 8 8 N 1.46963 * 108.63436 * 310.57693 * 7 6 5 9 9 S 1.65598 * 120.59737 * 235.20435 * 8 7 6 10 10 O 1.42104 * 104.27651 * 333.93039 * 9 8 7 11 11 O 1.42095 * 104.28128 * 206.07450 * 9 8 7 12 12 C 1.81399 * 104.45041 * 89.99848 * 9 8 7 13 13 C 1.52997 * 109.47147 * 180.02562 * 12 9 8 14 14 C 1.53006 * 109.47127 * 180.02562 * 13 12 9 15 15 C 1.50698 * 109.47184 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99819 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00046 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00192 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47309 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47510 * 119.99847 * 19 17 15 22 22 H 1.48506 * 109.47246 * 239.99882 * 19 17 15 23 23 C 1.46965 * 118.81172 * 55.47706 * 8 7 6 24 24 C 1.46963 * 120.59740 * 0.02562 * 5 2 1 25 25 H 1.08996 * 109.47094 * 177.79374 * 1 2 3 26 26 H 1.09002 * 109.47128 * 297.78709 * 1 2 3 27 27 H 1.08999 * 109.47133 * 57.78598 * 1 2 3 28 28 H 0.97006 * 119.99816 * 304.93948 * 3 2 1 29 29 H 1.08997 * 109.60844 * 115.50376 * 6 5 2 30 30 H 1.09007 * 109.75078 * 355.07783 * 6 5 2 31 31 H 1.09000 * 109.61229 * 190.83409 * 7 6 5 32 32 H 1.08997 * 109.74925 * 70.40329 * 7 6 5 33 33 H 1.08996 * 109.47243 * 60.00524 * 12 9 8 34 34 H 1.09001 * 109.47190 * 300.00108 * 12 9 8 35 35 H 1.09001 * 109.47502 * 60.00399 * 13 12 9 36 36 H 1.09001 * 109.47289 * 300.00196 * 13 12 9 37 37 H 1.09001 * 109.47002 * 299.99574 * 14 13 12 38 38 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 39 39 H 0.96996 * 120.00505 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.60814 * 64.26741 * 23 8 7 41 41 H 1.08998 * 109.61392 * 184.77623 * 23 8 7 42 42 H 1.08995 * 109.61195 * 244.49740 * 24 5 2 43 43 H 1.09000 * 109.60893 * 4.83458 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 7 2.2838 1.4177 0.0000 4 8 2.4067 -0.6672 1.1058 5 7 2.3348 -0.7329 -1.3907 6 6 3.7710 -0.8779 -1.6671 7 6 4.0735 -0.2475 -3.0321 8 7 3.1079 -0.7641 -4.0122 9 16 3.6286 -1.4960 -5.4034 10 8 4.9127 -0.9335 -5.6358 11 8 2.5643 -1.2971 -6.3237 12 6 3.7721 -3.2505 -4.9655 13 6 4.2521 -4.0425 -6.1834 14 6 4.3725 -5.5224 -5.8142 15 6 4.8458 -6.3024 -7.0136 16 1 5.0409 -5.7936 -7.9460 17 6 5.0289 -7.6658 -6.9208 18 7 4.7909 -8.2856 -5.7856 19 14 5.6150 -8.6328 -8.4077 20 1 5.8087 -7.7089 -9.5542 21 1 6.9016 -9.3016 -8.0876 22 1 4.6000 -9.6567 -8.7638 23 6 1.6717 -0.6141 -3.7385 24 6 1.3693 -1.2489 -2.3711 25 1 -0.3633 -1.0269 -0.0396 26 1 -0.3633 0.4791 0.9092 27 1 -0.3633 0.5478 -0.8695 28 1 1.9796 2.0294 -0.6887 29 1 4.0349 -1.9353 -1.6858 30 1 4.3480 -0.3705 -0.8939 31 1 5.0849 -0.5115 -3.3410 32 1 3.9826 0.8366 -2.9654 33 1 2.7996 -3.6263 -4.6476 34 1 4.4892 -3.3646 -4.1527 35 1 5.2247 -3.6666 -6.5010 36 1 3.5353 -3.9284 -6.9966 37 1 5.0891 -5.6369 -5.0009 38 1 3.3997 -5.8980 -5.4969 39 1 4.9194 -9.2448 -5.7204 40 1 1.4117 0.4443 -3.7187 41 1 1.0966 -1.1201 -4.5139 42 1 1.4617 -2.3327 -2.4401 43 1 0.3576 -0.9872 -2.0609 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665930098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:42 Heat of formation + Delta-G solvation = -63.933462 kcal Electronic energy + Delta-G solvation = -26225.917168 eV Core-core repulsion = 22368.598747 eV Total energy + Delta-G solvation = -3857.318421 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.90141 -37.10582 -36.60298 -35.88641 -34.74347 -34.06335 -32.52753 -32.23940 -32.08691 -29.71942 -27.88105 -26.71333 -24.38743 -23.81033 -21.80686 -20.57663 -19.62193 -18.80285 -18.22290 -17.09623 -16.85688 -16.69816 -16.38597 -15.95280 -15.86440 -15.12405 -15.00836 -14.72043 -14.55774 -14.40505 -14.25609 -13.88041 -13.73984 -12.97833 -12.85675 -12.65288 -12.35053 -12.30015 -12.26754 -12.04883 -11.93316 -11.90013 -11.85717 -11.63536 -11.36211 -11.17980 -10.97511 -10.90213 -10.60795 -10.35923 -10.02098 -9.85145 -9.74158 -9.43493 -9.19792 -8.89499 -8.45550 -6.10133 -4.13389 -0.38838 0.29230 2.28592 2.60399 3.25118 3.26298 3.34146 3.38693 3.69041 3.87030 3.93261 4.11699 4.29606 4.38732 4.41841 4.47756 4.55048 4.71686 4.81888 4.87877 4.97480 5.08733 5.09777 5.15484 5.24669 5.26518 5.29588 5.45138 5.67843 5.79745 5.86418 5.97570 6.15402 6.28199 6.37219 6.80401 6.88987 7.51493 7.60783 7.87670 8.27831 8.93087 9.51780 11.01052 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018297 B = 0.002712 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.942423 B =10323.850780 C =11114.318601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.668 4.668 2 S 2.505 3.495 3 N -1.234 6.234 4 O -0.927 6.927 5 N -1.005 6.005 6 C 0.117 3.883 7 C 0.108 3.892 8 N -1.002 6.002 9 S 2.596 3.404 10 O -0.956 6.956 11 O -0.959 6.959 12 C -0.608 4.608 13 C -0.106 4.106 14 C 0.031 3.969 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.109 3.891 24 C 0.086 3.914 25 H 0.120 0.880 26 H 0.133 0.867 27 H 0.125 0.875 28 H 0.383 0.617 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.261 0.739 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.082 0.918 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.044 18.535 10.470 23.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.822 4.822 2 S 2.596 3.404 3 N -1.053 6.053 4 O -0.907 6.907 5 N -0.838 5.838 6 C -0.010 4.010 7 C -0.019 4.019 8 N -0.838 5.838 9 S 2.693 3.307 10 O -0.947 6.947 11 O -0.949 6.949 12 C -0.739 4.739 13 C -0.145 4.145 14 C -0.007 4.007 15 C -0.565 4.565 16 H 0.077 0.923 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.018 4.018 24 C -0.042 4.042 25 H 0.139 0.861 26 H 0.151 0.849 27 H 0.144 0.856 28 H 0.205 0.795 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.123 0.877 32 H 0.098 0.902 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.123 0.877 42 H 0.100 0.900 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.009 18.588 11.011 23.811 hybrid contribution -0.849 -1.163 -1.071 1.795 sum -10.858 17.425 9.939 22.811 Atomic orbital electron populations 1.30647 1.29181 1.10856 1.11489 1.10696 0.77474 0.77229 0.74978 1.72855 1.64102 1.17715 1.50626 1.93543 1.72847 1.75811 1.48547 1.58052 1.12589 1.77308 1.35823 1.21774 0.79436 1.02296 0.97470 1.21801 0.92807 0.99637 0.87621 1.57833 1.12436 1.74055 1.39474 1.05595 0.74069 0.77801 0.73227 1.93572 1.41619 1.76132 1.83333 1.93560 1.56037 1.85451 1.59848 1.30603 1.10929 1.21971 1.10445 1.21508 1.00462 1.00111 0.92445 1.19059 0.97569 0.86872 0.97208 1.21282 1.45160 0.92621 0.97411 0.92324 1.25019 0.95389 0.97894 0.96066 1.69959 1.49069 1.09454 1.24903 0.86504 0.78435 0.79995 0.82910 1.19593 1.20905 1.20937 1.21802 0.81092 1.02144 0.96808 1.22176 0.91549 1.00615 0.89893 0.86136 0.84864 0.85616 0.79539 0.90452 0.88495 0.87696 0.90213 0.85534 0.85410 0.91571 0.91623 0.96118 0.96178 0.92915 0.90549 0.87693 0.89985 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -1.98 9.24 101.05 0.93 -1.05 16 2 S 2.51 17.62 5.32 -107.50 -0.57 17.04 16 3 N -1.23 -10.53 14.07 60.35 0.85 -9.68 16 4 O -0.93 -11.82 18.13 -35.23 -0.64 -12.46 16 5 N -1.00 -6.49 3.32 -113.03 -0.38 -6.87 16 6 C 0.12 0.91 6.70 -3.60 -0.02 0.89 16 7 C 0.11 0.90 6.48 -3.60 -0.02 0.87 16 8 N -1.00 -9.34 3.19 -113.04 -0.36 -9.70 16 9 S 2.60 34.42 5.42 -107.50 -0.58 33.84 16 10 O -0.96 -15.47 16.70 -57.54 -0.96 -16.43 16 11 O -0.96 -15.04 16.69 -57.54 -0.96 -16.00 16 12 C -0.61 -8.50 6.18 37.16 0.23 -8.27 16 13 C -0.11 -2.04 5.16 -26.73 -0.14 -2.18 16 14 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 15 C -0.53 -14.52 9.11 -34.44 -0.31 -14.84 16 16 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 19 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.11 0.71 6.52 -3.39 -0.02 0.69 16 24 C 0.09 0.41 6.66 -3.39 -0.02 0.39 16 25 H 0.12 0.23 7.91 -51.93 -0.41 -0.18 16 26 H 0.13 0.39 8.14 -51.92 -0.42 -0.03 16 27 H 0.13 0.07 7.72 -51.92 -0.40 -0.34 16 28 H 0.38 2.27 8.92 -21.58 -0.19 2.08 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.10 0.74 7.91 -51.93 -0.41 0.33 16 31 H 0.10 0.89 7.06 -51.93 -0.37 0.52 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.13 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.13 1.60 8.14 -51.92 -0.42 1.18 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.10 0.68 7.05 -51.93 -0.37 0.31 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.11 5.58 -51.93 -0.29 -0.18 16 LS Contribution 371.24 15.07 5.59 5.59 Total: -1.00 -40.19 371.24 -8.54 -48.73 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -6.63 Total: -3.54 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 0.38 Total: -21.35 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.85 Total: -51.66 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: -2.56 Total: -44.89 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 52.04 SS G_CDS: -1.15 Total: 50.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -40.19 -8.54 -48.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665930098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.208 kcal (2) G-P(sol) polarization free energy of solvation -40.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds