Wall clock time and date at job start Tue Mar 31 2020 22:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 N 1.49350 * 108.33135 * 2 1 4 4 O 1.42100 * 114.64829 * 121.10530 * 2 1 3 5 5 N 1.65602 * 108.32867 * 242.21090 * 2 1 3 6 6 C 1.46965 * 120.58991 * 179.97438 * 5 2 1 7 7 C 1.53368 * 108.63568 * 235.25007 * 6 5 2 8 8 N 1.46963 * 108.63436 * 310.57693 * 7 6 5 9 9 S 1.65598 * 120.59737 * 235.20435 * 8 7 6 10 10 O 1.42104 * 104.27651 * 333.93039 * 9 8 7 11 11 O 1.42095 * 104.28128 * 206.07450 * 9 8 7 12 12 C 1.81399 * 104.45041 * 89.99848 * 9 8 7 13 13 C 1.52997 * 109.47147 * 180.02562 * 12 9 8 14 14 C 1.53006 * 109.47127 * 180.02562 * 13 12 9 15 15 C 1.50698 * 109.47184 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99819 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00046 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00192 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47309 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47510 * 119.99847 * 19 17 15 22 22 H 1.48506 * 109.47246 * 239.99882 * 19 17 15 23 23 C 1.46965 * 118.81172 * 55.47706 * 8 7 6 24 24 C 1.46963 * 120.59740 * 0.02562 * 5 2 1 25 25 H 1.08996 * 109.47094 * 177.79374 * 1 2 3 26 26 H 1.09002 * 109.47128 * 297.78709 * 1 2 3 27 27 H 1.08999 * 109.47133 * 57.78598 * 1 2 3 28 28 H 0.97006 * 119.99816 * 304.93948 * 3 2 1 29 29 H 1.08997 * 109.60844 * 115.50376 * 6 5 2 30 30 H 1.09007 * 109.75078 * 355.07783 * 6 5 2 31 31 H 1.09000 * 109.61229 * 190.83409 * 7 6 5 32 32 H 1.08997 * 109.74925 * 70.40329 * 7 6 5 33 33 H 1.08996 * 109.47243 * 60.00524 * 12 9 8 34 34 H 1.09001 * 109.47190 * 300.00108 * 12 9 8 35 35 H 1.09001 * 109.47502 * 60.00399 * 13 12 9 36 36 H 1.09001 * 109.47289 * 300.00196 * 13 12 9 37 37 H 1.09001 * 109.47002 * 299.99574 * 14 13 12 38 38 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 39 39 H 0.96996 * 120.00505 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.60814 * 64.26741 * 23 8 7 41 41 H 1.08998 * 109.61392 * 184.77623 * 23 8 7 42 42 H 1.08995 * 109.61195 * 244.49740 * 24 5 2 43 43 H 1.09000 * 109.60893 * 4.83458 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 7 2.2838 1.4177 0.0000 4 8 2.4067 -0.6672 1.1058 5 7 2.3348 -0.7329 -1.3907 6 6 3.7710 -0.8779 -1.6671 7 6 4.0735 -0.2475 -3.0321 8 7 3.1079 -0.7641 -4.0122 9 16 3.6286 -1.4960 -5.4034 10 8 4.9127 -0.9335 -5.6358 11 8 2.5643 -1.2971 -6.3237 12 6 3.7721 -3.2505 -4.9655 13 6 4.2521 -4.0425 -6.1834 14 6 4.3725 -5.5224 -5.8142 15 6 4.8458 -6.3024 -7.0136 16 1 5.0409 -5.7936 -7.9460 17 6 5.0289 -7.6658 -6.9208 18 7 4.7909 -8.2856 -5.7856 19 14 5.6150 -8.6328 -8.4077 20 1 5.8087 -7.7089 -9.5542 21 1 6.9016 -9.3016 -8.0876 22 1 4.6000 -9.6567 -8.7638 23 6 1.6717 -0.6141 -3.7385 24 6 1.3693 -1.2489 -2.3711 25 1 -0.3633 -1.0269 -0.0396 26 1 -0.3633 0.4791 0.9092 27 1 -0.3633 0.5478 -0.8695 28 1 1.9796 2.0294 -0.6887 29 1 4.0349 -1.9353 -1.6858 30 1 4.3480 -0.3705 -0.8939 31 1 5.0849 -0.5115 -3.3410 32 1 3.9826 0.8366 -2.9654 33 1 2.7996 -3.6263 -4.6476 34 1 4.4892 -3.3646 -4.1527 35 1 5.2247 -3.6666 -6.5010 36 1 3.5353 -3.9284 -6.9966 37 1 5.0891 -5.6369 -5.0009 38 1 3.3997 -5.8980 -5.4969 39 1 4.9194 -9.2448 -5.7204 40 1 1.4117 0.4443 -3.7187 41 1 1.0966 -1.1201 -4.5139 42 1 1.4617 -2.3327 -2.4401 43 1 0.3576 -0.9872 -2.0609 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665930098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:42 Heat of formation + Delta-G solvation = -98.228487 kcal Electronic energy + Delta-G solvation = -26227.404312 eV Core-core repulsion = 22368.598747 eV Total energy + Delta-G solvation = -3858.805565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.48735 -38.27341 -37.33980 -37.06521 -36.47101 -34.70877 -34.16466 -33.07198 -32.60584 -30.04152 -29.65914 -27.34347 -25.62581 -24.93156 -22.74800 -21.95590 -20.36719 -19.52962 -19.06941 -18.60363 -17.79513 -17.50981 -17.23847 -17.18883 -16.49809 -16.48513 -16.11361 -15.55887 -15.49179 -15.32275 -15.03658 -14.52084 -14.18210 -14.09691 -14.02694 -13.69330 -13.57537 -13.53167 -13.19952 -13.04769 -12.99320 -12.98408 -12.78580 -12.69348 -12.61256 -12.55598 -12.27868 -12.17130 -11.82635 -11.76132 -11.41700 -11.26310 -10.84263 -10.58999 -10.34108 -10.22395 -9.55007 -8.23798 -6.34637 -0.87146 -0.78126 1.38751 1.39940 1.52715 1.60017 1.91751 2.38944 2.79917 2.81414 3.09941 3.12371 3.23275 3.43624 3.73163 3.86132 3.96376 3.97965 4.17068 4.19654 4.22036 4.28592 4.32272 4.38647 4.59000 4.64248 4.64846 4.73175 4.94802 4.96642 4.99716 5.05386 5.13865 5.26895 5.44891 5.48753 5.56349 5.62633 5.78771 6.18927 6.53137 6.81459 7.34978 8.87719 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018297 B = 0.002712 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.942423 B =10323.850780 C =11114.318601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.644 4.644 2 S 2.513 3.487 3 N -1.279 6.279 4 O -0.994 6.994 5 N -1.002 6.002 6 C 0.114 3.886 7 C 0.107 3.893 8 N -0.994 5.994 9 S 2.623 3.377 10 O -0.987 6.987 11 O -0.981 6.981 12 C -0.610 4.610 13 C -0.106 4.106 14 C 0.032 3.968 15 C -0.551 4.551 16 H 0.060 0.940 17 C 0.003 3.997 18 N -0.930 5.930 19 Si 0.961 3.039 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.276 1.276 23 C 0.095 3.905 24 C 0.079 3.921 25 H 0.141 0.859 26 H 0.141 0.859 27 H 0.163 0.837 28 H 0.392 0.608 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.147 0.853 34 H 0.140 0.860 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.000 1.000 38 H 0.004 0.996 39 H 0.265 0.735 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.177 19.406 10.122 25.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.803 4.803 2 S 2.610 3.390 3 N -1.099 6.099 4 O -0.975 6.975 5 N -0.834 5.834 6 C -0.014 4.014 7 C -0.020 4.020 8 N -0.832 5.832 9 S 2.720 3.280 10 O -0.978 6.978 11 O -0.971 6.971 12 C -0.741 4.741 13 C -0.145 4.145 14 C -0.006 4.006 15 C -0.589 4.589 16 H 0.078 0.922 17 C -0.195 4.195 18 N -0.570 5.570 19 Si 0.786 3.214 20 H -0.188 1.188 21 H -0.204 1.204 22 H -0.202 1.202 23 C -0.031 4.031 24 C -0.048 4.048 25 H 0.159 0.841 26 H 0.159 0.841 27 H 0.181 0.819 28 H 0.215 0.785 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.165 0.835 34 H 0.158 0.842 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.019 0.981 38 H 0.023 0.977 39 H 0.073 0.927 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.100 0.900 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.098 19.462 10.644 25.267 hybrid contribution -0.330 -1.401 -0.925 1.711 sum -12.428 18.061 9.719 23.982 Atomic orbital electron populations 1.30425 1.22924 1.13127 1.13794 1.09796 0.79354 0.75981 0.73897 1.72783 1.67278 1.18615 1.51211 1.93471 1.75894 1.76830 1.51354 1.57971 1.12250 1.77268 1.35921 1.21715 0.80619 1.02038 0.96992 1.21914 0.92367 1.00375 0.87334 1.57514 1.14183 1.72972 1.38547 1.04532 0.72950 0.76943 0.73607 1.93529 1.43422 1.76441 1.84372 1.93525 1.56566 1.85543 1.61452 1.30588 1.12240 1.22752 1.08486 1.21299 1.00801 0.97526 0.94867 1.18950 0.95814 0.90202 0.95651 1.21772 1.45192 0.93487 0.98457 0.92224 1.25916 0.95483 0.99083 0.99034 1.70067 1.50060 1.09902 1.26930 0.85451 0.78048 0.78508 0.79392 1.18770 1.20353 1.20175 1.22212 0.78938 1.04078 0.97875 1.22454 0.93203 1.00610 0.88553 0.84056 0.84092 0.81915 0.78461 0.90756 0.88929 0.88282 0.88869 0.83503 0.84185 0.91889 0.91483 0.98113 0.97741 0.92651 0.88094 0.87357 0.89985 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -0.88 9.24 113.37 1.05 0.16 16 2 S 2.51 31.27 5.32 -56.49 -0.30 30.97 16 3 N -1.28 -20.61 14.07 37.02 0.52 -20.09 16 4 O -0.99 -25.64 18.13 -148.98 -2.70 -28.34 16 5 N -1.00 -10.94 3.32 -511.53 -1.70 -12.64 16 6 C 0.11 1.70 6.70 86.41 0.58 2.28 16 7 C 0.11 1.65 6.48 86.41 0.56 2.22 16 8 N -0.99 -16.76 3.19 -511.53 -1.63 -18.39 16 9 S 2.62 67.21 5.42 -56.49 -0.31 66.91 16 10 O -0.99 -31.69 16.70 -127.65 -2.13 -33.82 16 11 O -0.98 -29.54 16.69 -127.65 -2.13 -31.67 16 12 C -0.61 -16.78 6.18 71.98 0.44 -16.34 16 13 C -0.11 -4.12 5.16 30.60 0.16 -3.96 16 14 C 0.03 1.61 4.97 29.85 0.15 1.76 16 15 C -0.55 -30.87 9.11 25.60 0.23 -30.64 16 16 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 17 C 0.00 0.17 5.46 84.65 0.46 0.64 16 18 N -0.93 -55.10 13.29 21.45 0.28 -54.82 16 19 Si 0.96 43.70 29.54 68.60 2.03 45.72 16 20 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 23 C 0.10 0.94 6.52 86.55 0.56 1.50 16 24 C 0.08 0.48 6.66 86.55 0.58 1.05 16 25 H 0.14 -0.22 7.91 -2.39 -0.02 -0.24 16 26 H 0.14 0.23 8.14 -2.39 -0.02 0.21 16 27 H 0.16 -0.87 7.72 -2.39 -0.02 -0.88 16 28 H 0.39 4.07 8.92 -104.94 -0.94 3.13 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.46 7.91 -2.38 -0.02 1.45 16 31 H 0.10 1.66 7.06 -2.39 -0.02 1.64 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.15 3.38 8.14 -2.39 -0.02 3.36 16 34 H 0.14 3.47 8.14 -2.39 -0.02 3.45 16 35 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 39 H 0.26 14.70 8.31 -92.71 -0.77 13.92 16 40 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.11 1.06 7.05 -2.39 -0.02 1.05 16 42 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.14 -0.41 5.58 -2.39 -0.01 -0.43 16 Total: -1.00 -89.78 371.24 -3.22 -93.00 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 0.07 Total: 4.50 kcal Atomic # 6 Polarization: -46.09 SS G_CDS: 4.77 Total: -41.32 kcal Atomic # 7 Polarization: -103.42 SS G_CDS: -2.53 Total: -105.94 kcal Atomic # 8 Polarization: -86.86 SS G_CDS: -6.96 Total: -93.83 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: 98.48 SS G_CDS: -0.61 Total: 97.87 kcal Total: -89.78 -3.22 -93.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665930098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.231 kcal (2) G-P(sol) polarization free energy of solvation -89.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds