Wall clock time and date at job start Tue Mar 31 2020 22:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 110.28711 * 2 1 4 4 C 1.34773 * 120.00772 * 60.66920 * 3 2 1 5 5 O 1.21569 * 119.99292 * 0.02562 * 4 3 2 6 6 C 1.47744 * 120.00434 * 180.02562 * 4 3 2 7 7 C 1.39356 * 124.11370 * 179.72654 * 6 4 3 8 8 N 1.30098 * 112.14244 * 179.84403 * 7 6 4 9 9 S 1.55930 * 108.75217 * 0.40306 * 8 7 6 10 10 N 1.31487 * 124.11734 * 0.02562 * 6 4 3 11 11 C 1.54263 * 110.32251 * 122.12268 * 2 1 3 12 12 C 1.54381 * 105.06116 * 118.89622 * 11 2 1 13 13 N 1.48557 * 104.59537 * 23.85498 * 12 11 2 14 14 C 1.46899 * 111.00288 * 200.96301 * 13 12 11 15 15 C 1.50694 * 109.47494 * 176.47321 * 14 13 12 16 16 O 1.21293 * 119.99937 * 6.02868 * 15 14 13 17 17 N 1.34769 * 120.00159 * 186.03242 * 15 14 13 18 18 C 1.37107 * 119.99981 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99879 * 359.97438 * 18 17 15 20 20 C 1.38951 * 119.99713 * 180.02562 * 18 17 15 21 21 N 1.31409 * 119.99878 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 120.00170 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.46677 * 269.99853 * 22 20 18 24 24 H 1.48494 * 109.46815 * 29.99620 * 22 20 18 25 25 H 1.48499 * 109.47157 * 150.00131 * 22 20 18 26 26 C 1.48562 * 104.22024 * 320.51796 * 13 12 11 27 27 H 1.08995 * 109.47562 * 299.33273 * 1 2 3 28 28 H 1.09001 * 109.46717 * 59.33404 * 1 2 3 29 29 H 1.09002 * 109.47222 * 179.32476 * 1 2 3 30 30 H 0.97004 * 119.99690 * 240.67105 * 3 2 1 31 31 H 1.07997 * 123.92997 * 0.02562 * 7 6 4 32 32 H 1.09003 * 110.32518 * 0.02562 * 11 2 1 33 33 H 1.09004 * 110.32513 * 237.79470 * 11 2 1 34 34 H 1.09000 * 110.40979 * 265.07658 * 12 11 2 35 35 H 1.09001 * 110.50656 * 142.68092 * 12 11 2 36 36 H 1.08993 * 109.47203 * 56.46307 * 14 13 12 37 37 H 1.09007 * 109.46135 * 296.47019 * 14 13 12 38 38 H 0.97000 * 120.00034 * 0.02562 * 17 15 14 39 39 H 0.97000 * 120.00353 * 179.97438 * 21 20 18 40 40 H 1.09001 * 110.41361 * 158.26538 * 26 13 12 41 41 H 1.09004 * 110.41045 * 280.70211 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0379 1.3741 0.0000 4 6 1.7354 2.2045 1.0175 5 8 1.0413 1.8131 1.9356 6 6 2.2472 3.5905 1.0171 7 6 1.9836 4.5213 2.0202 8 7 2.5522 5.6679 1.7869 9 16 3.3269 5.5778 0.4366 10 7 3.0023 4.0976 0.0675 11 6 2.0658 -0.7692 1.2251 12 6 2.8806 -1.9416 0.6378 13 7 3.2694 -1.4837 -0.7208 14 6 3.6068 -2.6234 -1.5841 15 6 3.9113 -2.1278 -2.9743 16 8 3.9604 -0.9364 -3.1962 17 7 4.1291 -3.0084 -3.9709 18 6 4.4056 -2.5576 -5.2359 19 1 4.4485 -1.4967 -5.4336 20 6 4.6296 -3.4655 -6.2635 21 7 4.8941 -3.0334 -7.4760 22 14 4.5533 -5.3005 -5.9219 23 1 5.9009 -5.7879 -5.5322 24 1 3.5950 -5.5588 -4.8173 25 1 4.1035 -6.0134 -7.1445 26 6 2.0663 -0.7723 -1.2244 27 1 -0.3634 0.5034 0.8958 28 1 -0.3633 0.5242 -0.8840 29 1 -0.3634 -1.0276 -0.0121 30 1 2.5921 1.6863 -0.7324 31 1 1.3801 4.3139 2.8915 32 1 1.2387 -1.1472 1.8263 33 1 2.7081 -0.1249 1.8255 34 1 2.2647 -2.8387 0.5749 35 1 3.7670 -2.1315 1.2431 36 1 2.7640 -3.3134 -1.6207 37 1 4.4800 -3.1374 -1.1821 38 1 4.0895 -3.9613 -3.7935 39 1 5.0509 -3.6672 -8.1934 40 1 2.3395 -0.0800 -2.0208 41 1 1.3230 -1.4865 -1.5788 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671619718.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:37 Heat of formation + Delta-G solvation = 12.018890 kcal Electronic energy + Delta-G solvation = -27005.973615 eV Core-core repulsion = 23048.797536 eV Total energy + Delta-G solvation = -3957.176080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.41218 -40.15907 -38.75984 -37.61167 -34.77604 -34.03126 -33.78341 -31.76940 -31.47225 -29.66051 -27.65419 -27.56970 -25.57875 -23.97564 -23.43616 -21.42082 -20.83682 -19.87602 -19.39674 -19.23939 -18.28679 -17.92075 -16.54898 -16.31183 -15.76379 -15.61718 -15.41192 -15.13348 -14.85394 -14.56418 -14.44503 -13.80597 -13.45285 -13.18388 -13.03615 -12.59463 -12.56727 -12.48610 -12.27953 -12.05132 -11.93217 -11.69432 -11.58947 -11.45659 -11.34083 -11.30059 -11.06456 -10.90705 -10.85975 -10.62617 -10.04828 -10.00914 -9.58485 -9.51943 -9.15559 -8.62454 -8.24023 -8.15243 -6.34498 -3.86029 0.16243 1.11869 1.28303 1.33997 2.91946 2.94955 2.99477 3.04269 3.12646 3.69335 3.96354 4.07324 4.19286 4.39739 4.54779 4.65412 4.83011 4.85146 5.04818 5.16194 5.16838 5.19960 5.34587 5.54353 5.57348 5.62910 5.69840 5.72460 5.80096 5.88677 5.91418 6.03120 6.09222 6.16763 6.28123 6.49732 6.95700 7.04431 7.41203 7.54637 7.98056 8.10559 8.56192 8.91470 9.38729 9.78760 10.78524 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016257 B = 0.002613 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.915458 B =10711.210881 C =11947.708453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.170 3.830 3 N -0.686 5.686 4 C 0.605 3.395 5 O -0.527 6.527 6 C 0.011 3.989 7 C 0.088 3.912 8 N -0.582 5.582 9 S 0.721 5.279 10 N -0.540 5.540 11 C -0.118 4.118 12 C 0.027 3.973 13 N -0.484 5.484 14 C 0.031 3.969 15 C 0.451 3.549 16 O -0.561 6.561 17 N -0.590 5.590 18 C -0.305 4.305 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.881 5.881 22 Si 0.879 3.121 23 H -0.270 1.270 24 H -0.270 1.270 25 H -0.277 1.277 26 C 0.034 3.966 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.416 0.584 31 H 0.214 0.786 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.044 0.956 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.370 0.630 39 H 0.274 0.726 40 H 0.112 0.888 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.856 8.681 18.887 21.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.084 3.916 3 N -0.337 5.337 4 C 0.385 3.615 5 O -0.403 6.403 6 C -0.164 4.164 7 C -0.106 4.106 8 N -0.422 5.422 9 S 0.762 5.238 10 N -0.390 5.390 11 C -0.157 4.157 12 C -0.101 4.101 13 N -0.208 5.208 14 C -0.101 4.101 15 C 0.237 3.763 16 O -0.443 6.443 17 N -0.229 5.229 18 C -0.433 4.433 19 H 0.138 0.862 20 C -0.161 4.161 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.202 1.202 26 C -0.094 4.094 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.253 0.747 31 H 0.230 0.770 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.130 0.870 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.636 10.945 18.133 21.917 hybrid contribution -1.307 -3.253 0.489 3.540 sum -6.943 7.691 18.622 21.311 Atomic orbital electron populations 1.22207 0.93367 1.02667 1.03462 1.21151 0.93803 0.80568 0.96106 1.46008 1.51963 1.11722 1.24042 1.16713 0.80076 0.81860 0.82803 1.90787 1.38288 1.75451 1.35776 1.22602 1.01651 0.99434 0.92716 1.23767 0.99616 0.85739 1.01455 1.72264 1.18081 1.29065 1.22816 1.79172 1.36371 1.03160 1.05078 1.72507 1.18339 1.16724 1.31389 1.22654 0.99673 0.96622 0.96714 1.23234 0.99042 0.96473 0.91352 1.65203 1.33003 1.21680 1.00947 1.22127 1.01422 0.92730 0.93808 1.19598 0.84306 0.87111 0.85324 1.90526 1.55060 1.15591 1.83123 1.42214 1.64267 1.07085 1.09343 1.19421 1.44960 0.96680 0.82271 0.86247 1.25040 0.97498 0.98495 0.95093 1.69617 1.46924 1.35044 1.00470 0.86679 0.78840 0.85368 0.78535 1.19582 1.19542 1.20178 1.23498 0.91115 0.98392 0.96385 0.90253 0.92219 0.91529 0.74690 0.77012 0.90312 0.90522 0.93750 0.89963 0.93187 0.88791 0.79711 0.91584 0.87032 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 8.16 37.16 0.30 -1.48 16 2 C 0.17 2.13 1.01 -130.44 -0.13 2.00 16 3 N -0.69 -8.78 5.09 -47.29 -0.24 -9.02 16 4 C 0.61 7.55 6.99 -12.38 -0.09 7.46 16 5 O -0.53 -7.12 14.09 5.30 0.07 -7.04 16 6 C 0.01 0.13 6.81 -83.71 -0.57 -0.44 16 7 C 0.09 0.85 11.22 -17.87 -0.20 0.65 16 8 N -0.58 -5.65 11.41 19.44 0.22 -5.43 16 9 S 0.72 6.03 23.69 -107.50 -2.55 3.48 16 10 N -0.54 -6.04 11.00 23.18 0.25 -5.79 16 11 C -0.12 -1.38 5.48 -25.35 -0.14 -1.52 16 12 C 0.03 0.32 6.49 -2.18 -0.01 0.31 16 13 N -0.48 -7.43 5.18 -231.41 -1.20 -8.63 16 14 C 0.03 0.50 5.38 -4.98 -0.03 0.47 16 15 C 0.45 9.85 7.43 -10.99 -0.08 9.77 16 16 O -0.56 -14.25 14.00 5.55 0.08 -14.17 16 17 N -0.59 -13.67 5.09 -10.96 -0.06 -13.72 16 18 C -0.30 -8.43 10.16 -14.93 -0.15 -8.58 16 19 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -25.40 13.96 55.50 0.77 -24.62 16 22 Si 0.88 19.05 27.74 -169.99 -4.71 14.33 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 C 0.03 0.51 4.78 -2.18 -0.01 0.50 16 27 H 0.08 0.94 6.30 -51.93 -0.33 0.61 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 30 H 0.42 5.64 7.86 -40.82 -0.32 5.32 16 31 H 0.21 1.60 8.06 -52.49 -0.42 1.17 16 32 H 0.08 0.83 7.71 -51.93 -0.40 0.43 16 33 H 0.08 0.98 7.31 -51.93 -0.38 0.60 16 34 H 0.04 0.47 7.92 -51.93 -0.41 0.06 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.71 7.98 -51.93 -0.41 0.29 16 37 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.37 7.55 5.76 -40.82 -0.24 7.31 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.11 1.99 6.15 -51.93 -0.32 1.67 16 41 H 0.06 0.81 7.66 -51.93 -0.40 0.41 16 LS Contribution 352.37 15.07 5.31 5.31 Total: -1.00 -32.80 352.37 -8.12 -40.92 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -4.87 Total: 14.21 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: -1.21 Total: 10.17 kcal Atomic # 7 Polarization: -66.97 SS G_CDS: -0.25 Total: -67.22 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: 0.15 Total: -21.22 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.71 Total: 14.33 kcal Atomic # 16 Polarization: 6.03 SS G_CDS: -2.55 Total: 3.48 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.80 -8.12 -40.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671619718.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.942 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds