Wall clock time and date at job start Tue Mar 31 2020 22:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 110.28711 * 2 1 4 4 C 1.34773 * 120.00772 * 60.66920 * 3 2 1 5 5 O 1.21569 * 119.99292 * 0.02562 * 4 3 2 6 6 C 1.47744 * 120.00434 * 180.02562 * 4 3 2 7 7 C 1.39356 * 124.11370 * 179.72654 * 6 4 3 8 8 N 1.30098 * 112.14244 * 179.84403 * 7 6 4 9 9 S 1.55930 * 108.75217 * 0.40306 * 8 7 6 10 10 N 1.31487 * 124.11734 * 0.02562 * 6 4 3 11 11 C 1.54263 * 110.32251 * 122.12268 * 2 1 3 12 12 C 1.54381 * 105.06116 * 118.89622 * 11 2 1 13 13 N 1.48557 * 104.59537 * 23.85498 * 12 11 2 14 14 C 1.46899 * 111.00288 * 200.96301 * 13 12 11 15 15 C 1.50694 * 109.47494 * 176.47321 * 14 13 12 16 16 O 1.21293 * 119.99937 * 6.02868 * 15 14 13 17 17 N 1.34769 * 120.00159 * 186.03242 * 15 14 13 18 18 C 1.37107 * 119.99981 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99879 * 359.97438 * 18 17 15 20 20 C 1.38951 * 119.99713 * 180.02562 * 18 17 15 21 21 N 1.31409 * 119.99878 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 120.00170 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.46677 * 269.99853 * 22 20 18 24 24 H 1.48494 * 109.46815 * 29.99620 * 22 20 18 25 25 H 1.48499 * 109.47157 * 150.00131 * 22 20 18 26 26 C 1.48562 * 104.22024 * 320.51796 * 13 12 11 27 27 H 1.08995 * 109.47562 * 299.33273 * 1 2 3 28 28 H 1.09001 * 109.46717 * 59.33404 * 1 2 3 29 29 H 1.09002 * 109.47222 * 179.32476 * 1 2 3 30 30 H 0.97004 * 119.99690 * 240.67105 * 3 2 1 31 31 H 1.07997 * 123.92997 * 0.02562 * 7 6 4 32 32 H 1.09003 * 110.32518 * 0.02562 * 11 2 1 33 33 H 1.09004 * 110.32513 * 237.79470 * 11 2 1 34 34 H 1.09000 * 110.40979 * 265.07658 * 12 11 2 35 35 H 1.09001 * 110.50656 * 142.68092 * 12 11 2 36 36 H 1.08993 * 109.47203 * 56.46307 * 14 13 12 37 37 H 1.09007 * 109.46135 * 296.47019 * 14 13 12 38 38 H 0.97000 * 120.00034 * 0.02562 * 17 15 14 39 39 H 0.97000 * 120.00353 * 179.97438 * 21 20 18 40 40 H 1.09001 * 110.41361 * 158.26538 * 26 13 12 41 41 H 1.09004 * 110.41045 * 280.70211 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0379 1.3741 0.0000 4 6 1.7354 2.2045 1.0175 5 8 1.0413 1.8131 1.9356 6 6 2.2472 3.5905 1.0171 7 6 1.9836 4.5213 2.0202 8 7 2.5522 5.6679 1.7869 9 16 3.3269 5.5778 0.4366 10 7 3.0023 4.0976 0.0675 11 6 2.0658 -0.7692 1.2251 12 6 2.8806 -1.9416 0.6378 13 7 3.2694 -1.4837 -0.7208 14 6 3.6068 -2.6234 -1.5841 15 6 3.9113 -2.1278 -2.9743 16 8 3.9604 -0.9364 -3.1962 17 7 4.1291 -3.0084 -3.9709 18 6 4.4056 -2.5576 -5.2359 19 1 4.4485 -1.4967 -5.4336 20 6 4.6296 -3.4655 -6.2635 21 7 4.8941 -3.0334 -7.4760 22 14 4.5533 -5.3005 -5.9219 23 1 5.9009 -5.7879 -5.5322 24 1 3.5950 -5.5588 -4.8173 25 1 4.1035 -6.0134 -7.1445 26 6 2.0663 -0.7723 -1.2244 27 1 -0.3634 0.5034 0.8958 28 1 -0.3633 0.5242 -0.8840 29 1 -0.3634 -1.0276 -0.0121 30 1 2.5921 1.6863 -0.7324 31 1 1.3801 4.3139 2.8915 32 1 1.2387 -1.1472 1.8263 33 1 2.7081 -0.1249 1.8255 34 1 2.2647 -2.8387 0.5749 35 1 3.7670 -2.1315 1.2431 36 1 2.7640 -3.3134 -1.6207 37 1 4.4800 -3.1374 -1.1821 38 1 4.0895 -3.9613 -3.7935 39 1 5.0509 -3.6672 -8.1934 40 1 2.3395 -0.0800 -2.0208 41 1 1.3230 -1.4865 -1.5788 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671619718.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:36 Heat of formation + Delta-G solvation = -16.411906 kcal Electronic energy + Delta-G solvation = -27007.206467 eV Core-core repulsion = 23048.797536 eV Total energy + Delta-G solvation = -3958.408932 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.26127 -41.19988 -40.21057 -38.90302 -36.10254 -35.63915 -34.70382 -33.73963 -32.58073 -30.67859 -28.93289 -28.45606 -27.00721 -25.41567 -24.38310 -22.49797 -21.77709 -21.23387 -20.73530 -20.18990 -20.08529 -18.84322 -17.84397 -17.17865 -17.13236 -16.86481 -16.54430 -16.37810 -16.22213 -15.62249 -15.49336 -15.15810 -15.00596 -14.67378 -14.34987 -14.09853 -13.84105 -13.42189 -13.36722 -13.24532 -13.03512 -12.97254 -12.67180 -12.45700 -12.40841 -12.31841 -12.24332 -12.09727 -11.97213 -11.90956 -11.81808 -11.46497 -11.00208 -10.35532 -10.31513 -10.22682 -10.07848 -9.37497 -8.40257 -6.00684 -0.64863 0.36012 0.47160 0.61658 1.30495 1.36120 1.44721 1.96584 1.99786 2.02540 2.23610 2.67362 3.15794 3.20436 3.32536 3.45569 3.72983 3.76733 4.04184 4.06847 4.17850 4.24771 4.31835 4.42240 4.47725 4.52502 4.61781 4.73963 4.75767 4.81942 4.97811 5.04682 5.17432 5.26804 5.33289 5.50460 5.53996 5.82558 5.91477 6.03367 6.40198 6.60916 6.89955 6.99337 7.41349 7.98278 8.77365 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016257 B = 0.002613 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.915458 B =10711.210881 C =11947.708453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.171 3.829 3 N -0.691 5.691 4 C 0.607 3.393 5 O -0.539 6.539 6 C -0.006 4.006 7 C 0.092 3.908 8 N -0.595 5.595 9 S 0.781 5.219 10 N -0.571 5.571 11 C -0.111 4.111 12 C 0.033 3.967 13 N -0.509 5.509 14 C 0.042 3.958 15 C 0.451 3.549 16 O -0.604 6.604 17 N -0.592 5.592 18 C -0.324 4.324 19 H 0.056 0.944 20 C -0.016 4.016 21 N -0.936 5.936 22 Si 0.963 3.037 23 H -0.258 1.258 24 H -0.230 1.230 25 H -0.277 1.277 26 C 0.038 3.962 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.409 0.591 31 H 0.231 0.769 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.122 0.878 38 H 0.389 0.611 39 H 0.278 0.722 40 H 0.072 0.928 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.580 6.305 21.568 23.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.085 3.915 3 N -0.342 5.342 4 C 0.388 3.612 5 O -0.416 6.416 6 C -0.180 4.180 7 C -0.101 4.101 8 N -0.437 5.437 9 S 0.823 5.177 10 N -0.423 5.423 11 C -0.150 4.150 12 C -0.095 4.095 13 N -0.233 5.233 14 C -0.089 4.089 15 C 0.238 3.762 16 O -0.487 6.487 17 N -0.234 5.234 18 C -0.454 4.454 19 H 0.074 0.926 20 C -0.214 4.214 21 N -0.577 5.577 22 Si 0.784 3.216 23 H -0.183 1.183 24 H -0.153 1.153 25 H -0.202 1.202 26 C -0.090 4.090 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.245 0.755 31 H 0.247 0.753 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.139 0.861 38 H 0.224 0.776 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.380 8.566 20.867 23.441 hybrid contribution -1.026 -2.261 -0.373 2.511 sum -7.406 6.304 20.493 22.684 Atomic orbital electron populations 1.22160 0.92275 1.03676 1.02912 1.21192 0.94523 0.80330 0.95487 1.46070 1.52001 1.12101 1.24014 1.16822 0.79738 0.82293 0.82357 1.90764 1.38871 1.75927 1.36051 1.22489 1.02686 0.99249 0.93534 1.23929 0.99411 0.85221 1.01498 1.72231 1.18640 1.29176 1.23670 1.78912 1.34259 1.00925 1.03599 1.72355 1.19008 1.18644 1.32293 1.22621 0.99964 0.96312 0.96106 1.23296 0.99965 0.97157 0.89052 1.65153 1.33721 1.22029 1.02417 1.22070 1.03856 0.93322 0.89648 1.20831 0.81636 0.86419 0.87284 1.90526 1.55976 1.17880 1.84360 1.42040 1.65148 1.08248 1.07980 1.18984 1.46954 0.94330 0.85094 0.92586 1.26097 0.96110 1.05096 0.94115 1.69802 1.48211 1.37643 1.02008 0.85384 0.80258 0.76404 0.79596 1.18279 1.15347 1.20205 1.23341 0.91257 0.98101 0.96344 0.90658 0.92838 0.89726 0.75488 0.75313 0.88593 0.91724 0.91280 0.88845 0.89870 0.86051 0.77566 0.91219 0.90992 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 8.16 71.98 0.59 -2.64 16 2 C 0.17 4.14 1.01 4.50 0.00 4.15 16 3 N -0.69 -18.01 5.09 -421.80 -2.15 -20.16 16 4 C 0.61 15.12 6.99 86.76 0.61 15.73 16 5 O -0.54 -14.19 14.09 -3.93 -0.06 -14.25 16 6 C -0.01 -0.13 6.81 41.98 0.29 0.15 16 7 C 0.09 1.69 11.22 85.22 0.96 2.65 16 8 N -0.60 -10.91 11.41 -92.42 -1.05 -11.96 16 9 S 0.78 12.48 23.69 -56.49 -1.34 11.14 16 10 N -0.57 -12.86 11.00 -80.59 -0.89 -13.75 16 11 C -0.11 -2.36 5.48 31.49 0.17 -2.19 16 12 C 0.03 0.66 6.49 86.45 0.56 1.22 16 13 N -0.51 -14.67 5.18 -886.06 -4.59 -19.26 16 14 C 0.04 1.24 5.38 85.56 0.46 1.70 16 15 C 0.45 19.61 7.43 87.66 0.65 20.27 16 16 O -0.60 -32.04 14.00 -3.07 -0.04 -32.08 16 17 N -0.59 -27.17 5.09 -306.99 -1.56 -28.73 16 18 C -0.32 -18.67 10.16 84.04 0.85 -17.81 16 19 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 20 C -0.02 -0.86 5.50 84.93 0.47 -0.40 16 21 N -0.94 -56.05 13.96 21.66 0.30 -55.75 16 22 Si 0.96 38.19 27.74 68.60 1.90 40.09 16 23 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 24 H -0.23 -7.58 6.52 99.48 0.65 -6.94 16 25 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 26 C 0.04 1.11 4.78 86.45 0.41 1.53 16 27 H 0.07 1.69 6.30 -2.39 -0.02 1.67 16 28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.47 8.12 -2.39 -0.02 1.45 16 30 H 0.41 11.75 7.86 -92.71 -0.73 11.02 16 31 H 0.23 3.18 8.06 -2.91 -0.02 3.16 16 32 H 0.10 1.72 7.71 -2.39 -0.02 1.71 16 33 H 0.06 1.55 7.31 -2.38 -0.02 1.53 16 34 H 0.07 1.11 7.92 -2.39 -0.02 1.09 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.08 1.95 7.98 -2.39 -0.02 1.93 16 37 H 0.12 2.97 8.14 -2.38 -0.02 2.95 16 38 H 0.39 14.72 5.76 -92.71 -0.53 14.19 16 39 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.07 2.70 6.15 -2.39 -0.01 2.69 16 41 H 0.06 1.70 7.66 -2.39 -0.02 1.69 16 Total: -1.00 -76.68 352.37 -3.67 -80.35 By element: Atomic # 1 Polarization: 40.23 SS G_CDS: -0.22 Total: 40.01 kcal Atomic # 6 Polarization: 18.34 SS G_CDS: 6.02 Total: 24.36 kcal Atomic # 7 Polarization: -139.67 SS G_CDS: -9.94 Total: -149.62 kcal Atomic # 8 Polarization: -46.23 SS G_CDS: -0.10 Total: -46.33 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 1.90 Total: 40.09 kcal Atomic # 16 Polarization: 12.48 SS G_CDS: -1.34 Total: 11.14 kcal Total: -76.68 -3.67 -80.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671619718.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.940 kcal (2) G-P(sol) polarization free energy of solvation -76.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds