Wall clock time and date at job start Tue Mar 31 2020 22:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 110.27342 * 2 1 4 4 C 1.34772 * 120.00408 * 302.08686 * 3 2 1 5 5 O 1.21575 * 119.99460 * 0.02562 * 4 3 2 6 6 C 1.47754 * 120.00495 * 179.97438 * 4 3 2 7 7 C 1.39353 * 124.11801 * 179.72382 * 6 4 3 8 8 N 1.30084 * 112.14641 * 179.82170 * 7 6 4 9 9 S 1.55922 * 108.75490 * 0.42995 * 8 7 6 10 10 N 1.31483 * 124.11479 * 0.02899 * 6 4 3 11 11 C 1.54592 * 110.39651 * 237.85373 * 2 1 3 12 12 C 1.54934 * 102.92538 * 219.08606 * 11 2 1 13 13 N 1.48534 * 103.22627 * 37.41204 * 12 11 2 14 14 C 1.46903 * 110.99950 * 200.28082 * 13 12 11 15 15 C 1.50694 * 109.47066 * 287.39612 * 14 13 12 16 16 O 1.21297 * 120.00199 * 359.97438 * 15 14 13 17 17 N 1.34784 * 119.99988 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99735 * 179.72439 * 17 15 14 19 19 H 1.07998 * 120.00618 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99464 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00058 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99669 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47200 * 60.00190 * 22 20 18 24 24 H 1.48498 * 109.46669 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47156 * 300.00205 * 22 20 18 26 26 C 1.47897 * 105.81961 * 320.79405 * 13 12 11 27 27 H 1.08996 * 109.47331 * 297.90968 * 1 2 3 28 28 H 1.09004 * 109.47080 * 57.91152 * 1 2 3 29 29 H 1.09002 * 109.47493 * 177.91060 * 1 2 3 30 30 H 0.97008 * 120.00032 * 122.08760 * 3 2 1 31 31 H 1.08000 * 123.92553 * 0.02562 * 7 6 4 32 32 H 1.09003 * 110.72520 * 337.44359 * 11 2 1 33 33 H 1.08997 * 110.72559 * 100.54298 * 11 2 1 34 34 H 1.09002 * 110.66774 * 278.97766 * 12 11 2 35 35 H 1.09000 * 110.66999 * 155.84946 * 12 11 2 36 36 H 1.08998 * 109.46809 * 167.39713 * 14 13 12 37 37 H 1.09002 * 109.47056 * 47.39454 * 14 13 12 38 38 H 0.97000 * 119.99339 * 0.02562 * 17 15 14 39 39 H 0.97000 * 119.99610 * 179.97438 * 21 20 18 40 40 H 1.09006 * 109.91642 * 144.68166 * 26 13 12 41 41 H 1.09002 * 109.91860 * 265.77683 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0376 1.3742 0.0000 4 6 1.6895 2.2212 -0.9888 5 8 0.9539 1.8449 -1.8806 6 6 2.2010 3.6074 -0.9885 7 6 1.9014 4.5513 -1.9689 8 7 2.4723 5.6970 -1.7374 9 16 3.3077 5.5848 -0.4256 10 7 2.9990 4.0988 -0.0663 11 6 2.0687 -0.7710 -1.2269 12 6 3.2882 -1.5326 -0.6494 13 7 2.8333 -1.9216 0.7100 14 6 3.9768 -2.2224 1.5818 15 6 4.5876 -3.5380 1.1731 16 8 4.1164 -4.1638 0.2470 17 7 5.6569 -4.0198 1.8373 18 6 6.2090 -5.2194 1.4691 19 1 5.7876 -5.7781 0.6466 20 6 7.3117 -5.7158 2.1535 21 7 7.8249 -5.0357 3.1539 22 14 8.0646 -7.3500 1.6513 23 1 8.5233 -7.2712 0.2412 24 1 9.2208 -7.6537 2.5323 25 1 7.0478 -8.4244 1.7818 26 6 2.0645 -0.7672 1.2236 27 1 -0.3634 0.4810 0.9081 28 1 -0.3633 0.5459 -0.8707 29 1 -0.3634 -1.0270 -0.0375 30 1 2.6243 1.6746 0.7118 31 1 1.2662 4.3555 -2.8201 32 1 1.3207 -1.4691 -1.6027 33 1 2.3780 -0.0802 -2.0112 34 1 4.1581 -0.8784 -0.5915 35 1 3.5091 -2.4159 -1.2486 36 1 3.6386 -2.2845 2.6161 37 1 4.7216 -1.4318 1.4898 38 1 6.0329 -3.5198 2.5786 39 1 8.5944 -5.3825 3.6319 40 1 1.2325 -1.1175 1.8347 41 1 2.7139 -0.1222 1.8154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671619723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:40 Heat of formation + Delta-G solvation = 6.609331 kcal Electronic energy + Delta-G solvation = -26693.980579 eV Core-core repulsion = 22736.569923 eV Total energy + Delta-G solvation = -3957.410656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.59010 -40.25526 -38.66365 -37.55013 -34.83420 -34.08609 -33.73211 -31.64790 -31.14897 -29.68238 -27.82185 -27.53404 -25.41956 -24.13409 -23.51756 -21.65136 -20.74921 -20.08065 -19.50618 -19.11996 -18.12145 -17.86213 -16.50046 -16.33900 -16.03792 -15.85741 -15.20200 -14.91132 -14.68938 -14.59121 -14.34040 -13.96132 -13.54171 -13.36444 -13.15501 -12.67980 -12.59014 -12.43026 -12.14360 -11.87004 -11.78422 -11.65060 -11.49569 -11.48091 -11.30599 -11.25216 -11.01967 -10.94448 -10.76233 -10.43726 -10.20919 -10.16862 -9.67653 -9.47871 -9.30014 -8.50196 -8.01992 -7.93687 -6.40798 -3.81431 -0.02329 0.93530 1.12485 1.17325 2.70347 2.76968 3.20721 3.26177 3.30697 3.91333 3.97998 4.06951 4.24817 4.31419 4.49425 4.66423 4.68764 4.82725 5.04013 5.12594 5.23886 5.30151 5.40998 5.45743 5.59961 5.69058 5.77144 5.79942 5.89334 5.91268 5.98127 6.15218 6.18364 6.27951 6.36183 6.41821 7.09058 7.12069 7.21978 7.55940 7.78257 8.07031 8.63134 9.19326 9.55558 10.07791 10.77056 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018320 B = 0.002231 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.994050 B =12548.624430 C =13442.996444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.163 3.837 3 N -0.698 5.698 4 C 0.606 3.394 5 O -0.515 6.515 6 C 0.011 3.989 7 C 0.090 3.910 8 N -0.578 5.578 9 S 0.721 5.279 10 N -0.548 5.548 11 C -0.121 4.121 12 C 0.040 3.960 13 N -0.486 5.486 14 C 0.036 3.964 15 C 0.446 3.554 16 O -0.576 6.576 17 N -0.566 5.566 18 C -0.298 4.298 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.904 5.904 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.273 1.273 26 C 0.035 3.965 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.407 0.593 31 H 0.215 0.785 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.037 0.963 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.391 0.609 39 H 0.272 0.728 40 H 0.094 0.906 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.597 22.565 -3.468 25.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.078 3.922 3 N -0.350 5.350 4 C 0.386 3.614 5 O -0.390 6.390 6 C -0.164 4.164 7 C -0.103 4.103 8 N -0.419 5.419 9 S 0.763 5.237 10 N -0.398 5.398 11 C -0.160 4.160 12 C -0.088 4.088 13 N -0.210 5.210 14 C -0.096 4.096 15 C 0.231 3.769 16 O -0.459 6.459 17 N -0.203 5.203 18 C -0.427 4.427 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.757 3.243 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.094 4.094 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.243 0.757 31 H 0.232 0.768 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.119 0.881 36 H 0.107 0.893 37 H 0.067 0.933 38 H 0.224 0.776 39 H 0.081 0.919 40 H 0.112 0.888 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.408 22.768 -3.635 25.297 hybrid contribution 0.636 -0.741 -0.009 0.977 sum -9.773 22.026 -3.644 24.371 Atomic orbital electron populations 1.22185 0.92775 1.03419 1.03031 1.21302 0.94935 0.79474 0.96506 1.46121 1.50301 1.11825 1.26739 1.16712 0.80461 0.81757 0.82472 1.90818 1.35980 1.76001 1.36231 1.22612 1.00863 0.99432 0.93500 1.23800 0.99822 0.85481 1.01230 1.72272 1.17565 1.29369 1.22686 1.79148 1.34658 1.02132 1.07776 1.72446 1.18732 1.17434 1.31155 1.22881 0.98321 0.98514 0.96239 1.23326 0.95200 0.99603 0.90663 1.64554 1.20916 1.33520 1.02030 1.22088 0.92341 0.97372 0.97787 1.19668 0.83226 0.87745 0.86277 1.90513 1.63340 1.60766 1.31279 1.41852 1.26677 1.20707 1.31066 1.19644 1.10438 0.96737 1.15919 0.87980 1.25251 0.97004 0.99744 0.95970 1.69602 1.24475 1.39208 1.21218 0.85925 0.78354 0.81596 0.78393 1.19937 1.21010 1.19878 1.23228 0.99010 0.91813 0.95346 0.92690 0.90151 0.90714 0.75662 0.76846 0.89430 0.90500 0.94487 0.88095 0.89288 0.93256 0.77559 0.91863 0.88831 0.93321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 8.15 37.16 0.30 -1.34 16 2 C 0.16 1.85 0.94 -130.47 -0.12 1.73 16 3 N -0.70 -7.14 5.15 -47.31 -0.24 -7.39 16 4 C 0.61 6.56 7.01 -12.37 -0.09 6.48 16 5 O -0.52 -6.54 13.69 5.30 0.07 -6.47 16 6 C 0.01 0.11 6.81 -83.71 -0.57 -0.46 16 7 C 0.09 0.75 11.22 -17.88 -0.20 0.55 16 8 N -0.58 -4.82 11.41 19.42 0.22 -4.60 16 9 S 0.72 4.64 23.69 -107.50 -2.55 2.09 16 10 N -0.55 -4.76 11.00 23.17 0.25 -4.50 16 11 C -0.12 -1.60 5.85 -24.87 -0.15 -1.74 16 12 C 0.04 0.63 5.93 -1.90 -0.01 0.62 16 13 N -0.49 -7.87 4.91 -231.89 -1.14 -9.01 16 14 C 0.04 0.63 5.19 -4.98 -0.03 0.60 16 15 C 0.45 10.46 7.61 -10.98 -0.08 10.38 16 16 O -0.58 -15.49 14.64 5.54 0.08 -15.41 16 17 N -0.57 -14.29 5.29 -10.96 -0.06 -14.35 16 18 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 22 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 26 C 0.03 0.42 6.12 -2.76 -0.02 0.40 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.93 6.03 -51.93 -0.31 0.62 16 29 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 30 H 0.41 3.75 7.68 -40.82 -0.31 3.43 16 31 H 0.22 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.09 1.18 7.85 -51.93 -0.41 0.77 16 33 H 0.08 1.03 6.81 -51.93 -0.35 0.67 16 34 H 0.04 0.57 7.81 -51.93 -0.41 0.17 16 35 H 0.10 1.90 7.10 -51.93 -0.37 1.53 16 36 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 37 H 0.05 0.79 7.83 -51.93 -0.41 0.38 16 38 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 40 H 0.09 1.05 7.68 -51.93 -0.40 0.65 16 41 H 0.05 0.52 7.10 -51.93 -0.37 0.15 16 LS Contribution 355.37 15.07 5.36 5.36 Total: -1.00 -32.72 355.37 -8.36 -41.07 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -4.86 Total: 11.73 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -1.20 Total: 9.26 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: -0.24 Total: -63.69 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: 0.15 Total: -21.88 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 4.64 SS G_CDS: -2.55 Total: 2.09 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.72 -8.36 -41.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671619723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.683 kcal (2) G-P(sol) polarization free energy of solvation -32.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds