Wall clock time and date at job start Tue Mar 31 2020 22:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 110.27342 * 2 1 4 4 C 1.34772 * 120.00408 * 302.08686 * 3 2 1 5 5 O 1.21575 * 119.99460 * 0.02562 * 4 3 2 6 6 C 1.47754 * 120.00495 * 179.97438 * 4 3 2 7 7 C 1.39353 * 124.11801 * 179.72382 * 6 4 3 8 8 N 1.30084 * 112.14641 * 179.82170 * 7 6 4 9 9 S 1.55922 * 108.75490 * 0.42995 * 8 7 6 10 10 N 1.31483 * 124.11479 * 0.02899 * 6 4 3 11 11 C 1.54592 * 110.39651 * 237.85373 * 2 1 3 12 12 C 1.54934 * 102.92538 * 219.08606 * 11 2 1 13 13 N 1.48534 * 103.22627 * 37.41204 * 12 11 2 14 14 C 1.46903 * 110.99950 * 200.28082 * 13 12 11 15 15 C 1.50694 * 109.47066 * 287.39612 * 14 13 12 16 16 O 1.21297 * 120.00199 * 359.97438 * 15 14 13 17 17 N 1.34784 * 119.99988 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99735 * 179.72439 * 17 15 14 19 19 H 1.07998 * 120.00618 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99464 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00058 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99669 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47200 * 60.00190 * 22 20 18 24 24 H 1.48498 * 109.46669 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47156 * 300.00205 * 22 20 18 26 26 C 1.47897 * 105.81961 * 320.79405 * 13 12 11 27 27 H 1.08996 * 109.47331 * 297.90968 * 1 2 3 28 28 H 1.09004 * 109.47080 * 57.91152 * 1 2 3 29 29 H 1.09002 * 109.47493 * 177.91060 * 1 2 3 30 30 H 0.97008 * 120.00032 * 122.08760 * 3 2 1 31 31 H 1.08000 * 123.92553 * 0.02562 * 7 6 4 32 32 H 1.09003 * 110.72520 * 337.44359 * 11 2 1 33 33 H 1.08997 * 110.72559 * 100.54298 * 11 2 1 34 34 H 1.09002 * 110.66774 * 278.97766 * 12 11 2 35 35 H 1.09000 * 110.66999 * 155.84946 * 12 11 2 36 36 H 1.08998 * 109.46809 * 167.39713 * 14 13 12 37 37 H 1.09002 * 109.47056 * 47.39454 * 14 13 12 38 38 H 0.97000 * 119.99339 * 0.02562 * 17 15 14 39 39 H 0.97000 * 119.99610 * 179.97438 * 21 20 18 40 40 H 1.09006 * 109.91642 * 144.68166 * 26 13 12 41 41 H 1.09002 * 109.91860 * 265.77683 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0376 1.3742 0.0000 4 6 1.6895 2.2212 -0.9888 5 8 0.9539 1.8449 -1.8806 6 6 2.2010 3.6074 -0.9885 7 6 1.9014 4.5513 -1.9689 8 7 2.4723 5.6970 -1.7374 9 16 3.3077 5.5848 -0.4256 10 7 2.9990 4.0988 -0.0663 11 6 2.0687 -0.7710 -1.2269 12 6 3.2882 -1.5326 -0.6494 13 7 2.8333 -1.9216 0.7100 14 6 3.9768 -2.2224 1.5818 15 6 4.5876 -3.5380 1.1731 16 8 4.1164 -4.1638 0.2470 17 7 5.6569 -4.0198 1.8373 18 6 6.2090 -5.2194 1.4691 19 1 5.7876 -5.7781 0.6466 20 6 7.3117 -5.7158 2.1535 21 7 7.8249 -5.0357 3.1539 22 14 8.0646 -7.3500 1.6513 23 1 8.5233 -7.2712 0.2412 24 1 9.2208 -7.6537 2.5323 25 1 7.0478 -8.4244 1.7818 26 6 2.0645 -0.7672 1.2236 27 1 -0.3634 0.4810 0.9081 28 1 -0.3633 0.5459 -0.8707 29 1 -0.3634 -1.0270 -0.0375 30 1 2.6243 1.6746 0.7118 31 1 1.2662 4.3555 -2.8201 32 1 1.3207 -1.4691 -1.6027 33 1 2.3780 -0.0802 -2.0112 34 1 4.1581 -0.8784 -0.5915 35 1 3.5091 -2.4159 -1.2486 36 1 3.6386 -2.2845 2.6161 37 1 4.7216 -1.4318 1.4898 38 1 6.0329 -3.5198 2.5786 39 1 8.5944 -5.3825 3.6319 40 1 1.2325 -1.1175 1.8347 41 1 2.7139 -0.1222 1.8154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671619723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:39 Heat of formation + Delta-G solvation = -20.464555 kcal Electronic energy + Delta-G solvation = -26695.154591 eV Core-core repulsion = 22736.569923 eV Total energy + Delta-G solvation = -3958.584668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.29581 -41.19951 -40.11377 -38.92230 -36.10474 -35.58911 -34.70202 -33.29008 -32.54643 -30.78306 -28.94277 -28.44208 -26.90425 -25.53701 -24.39427 -22.80178 -21.63092 -21.07223 -20.76945 -20.15927 -19.85493 -18.91802 -17.86436 -17.25052 -17.15968 -16.64667 -16.52150 -16.20810 -16.12201 -15.83855 -15.52294 -15.49255 -14.84927 -14.67542 -14.19946 -14.13609 -13.65050 -13.44268 -13.29765 -13.18861 -12.96454 -12.92434 -12.54522 -12.43433 -12.39370 -12.34196 -12.26453 -12.12026 -12.10992 -12.00357 -11.88453 -11.46900 -11.01876 -10.33944 -10.30202 -10.10118 -9.99351 -9.35112 -8.45519 -5.93752 -0.65889 0.34421 0.45399 0.62028 1.39970 1.41619 1.52334 1.90161 1.99373 2.07765 2.29392 2.82111 3.21065 3.26822 3.41426 3.47281 3.67974 3.71211 3.90860 4.02951 4.22027 4.27701 4.30223 4.43221 4.48033 4.50705 4.56856 4.74602 4.81831 4.86680 4.94039 5.07801 5.11415 5.28752 5.36137 5.41578 5.44375 5.81747 5.92739 6.08365 6.37537 6.62557 6.98684 7.14713 7.58444 8.14959 8.71801 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018320 B = 0.002231 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.994050 B =12548.624430 C =13442.996444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.171 3.829 3 N -0.692 5.692 4 C 0.607 3.393 5 O -0.539 6.539 6 C -0.005 4.005 7 C 0.088 3.912 8 N -0.600 5.600 9 S 0.791 5.209 10 N -0.564 5.564 11 C -0.113 4.113 12 C 0.043 3.957 13 N -0.508 5.508 14 C 0.049 3.951 15 C 0.442 3.558 16 O -0.616 6.616 17 N -0.576 5.576 18 C -0.331 4.331 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.991 3.009 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.272 1.272 26 C 0.038 3.962 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.414 0.586 31 H 0.225 0.775 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.040 0.960 35 H 0.061 0.939 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.396 0.604 39 H 0.277 0.723 40 H 0.108 0.892 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.538 24.248 -2.272 26.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.085 3.915 3 N -0.345 5.345 4 C 0.388 3.612 5 O -0.416 6.416 6 C -0.179 4.179 7 C -0.103 4.103 8 N -0.442 5.442 9 S 0.833 5.167 10 N -0.416 5.416 11 C -0.152 4.152 12 C -0.085 4.085 13 N -0.232 5.232 14 C -0.083 4.083 15 C 0.229 3.771 16 O -0.501 6.501 17 N -0.213 5.213 18 C -0.461 4.461 19 H 0.095 0.905 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.814 3.186 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.090 4.090 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.252 0.748 31 H 0.241 0.759 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.133 0.867 37 H 0.089 0.911 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.126 0.874 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.357 24.475 -2.422 26.687 hybrid contribution 0.641 -1.144 -0.375 1.364 sum -9.716 23.332 -2.797 25.428 Atomic orbital electron populations 1.22123 0.91887 1.03408 1.03385 1.21147 0.95464 0.79819 0.95055 1.46011 1.50329 1.11195 1.26939 1.16876 0.79990 0.82335 0.82024 1.90807 1.37054 1.76663 1.37048 1.22343 1.02129 0.98951 0.94441 1.23896 0.99835 0.85241 1.01360 1.72194 1.18388 1.29601 1.24032 1.78887 1.32136 0.99958 1.05769 1.72285 1.18828 1.18970 1.31483 1.22771 0.97072 0.98265 0.97046 1.23161 0.96502 0.98181 0.90652 1.64460 1.20581 1.36218 1.01948 1.21956 0.93199 0.94086 0.99047 1.20768 0.82121 0.89257 0.84935 1.90490 1.64238 1.62524 1.32864 1.41920 1.27456 1.20363 1.31606 1.19599 1.11853 0.98268 1.16389 0.90454 1.26004 0.96780 1.02785 0.95691 1.69660 1.24697 1.40361 1.21500 0.85022 0.77785 0.77539 0.78205 1.19819 1.19462 1.19737 1.23283 0.99201 0.90790 0.95676 0.91003 0.91218 0.90796 0.74829 0.75913 0.90069 0.90762 0.94204 0.92032 0.86702 0.91135 0.77023 0.91334 0.87399 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.15 71.98 0.59 -2.32 16 2 C 0.17 3.62 0.94 4.48 0.00 3.62 16 3 N -0.69 -12.95 5.15 -421.87 -2.17 -15.12 16 4 C 0.61 12.46 7.01 86.76 0.61 13.07 16 5 O -0.54 -13.41 13.69 -3.95 -0.05 -13.46 16 6 C -0.01 -0.09 6.81 41.98 0.29 0.19 16 7 C 0.09 1.36 11.22 85.22 0.96 2.32 16 8 N -0.60 -8.96 11.41 -92.48 -1.06 -10.01 16 9 S 0.79 8.36 23.69 -56.49 -1.34 7.02 16 10 N -0.56 -8.64 11.00 -80.60 -0.89 -9.53 16 11 C -0.11 -2.97 5.85 31.80 0.19 -2.79 16 12 C 0.04 1.37 5.93 86.65 0.51 1.89 16 13 N -0.51 -15.93 4.91 -887.57 -4.35 -20.28 16 14 C 0.05 1.63 5.19 85.55 0.44 2.07 16 15 C 0.44 21.01 7.61 87.65 0.67 21.67 16 16 O -0.62 -34.28 14.64 -3.08 -0.05 -34.32 16 17 N -0.58 -29.50 5.29 -306.97 -1.62 -31.12 16 18 C -0.33 -18.89 9.68 84.04 0.81 -18.07 16 19 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 20 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 21 N -0.92 -49.66 13.05 21.66 0.28 -49.37 16 22 Si 0.99 43.12 29.55 68.60 2.03 45.15 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 26 C 0.04 0.83 6.12 86.45 0.53 1.35 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 28 H 0.07 1.54 6.03 -2.38 -0.01 1.53 16 29 H 0.07 1.44 8.11 -2.39 -0.02 1.43 16 30 H 0.41 6.61 7.68 -92.70 -0.71 5.90 16 31 H 0.22 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.08 2.23 7.85 -2.39 -0.02 2.21 16 33 H 0.07 2.00 6.81 -2.39 -0.02 1.98 16 34 H 0.04 1.23 7.81 -2.39 -0.02 1.21 16 35 H 0.06 2.45 7.10 -2.39 -0.02 2.43 16 36 H 0.11 3.29 8.08 -2.39 -0.02 3.27 16 37 H 0.07 2.10 7.83 -2.39 -0.02 2.08 16 38 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 39 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 40 H 0.11 2.08 7.68 -2.38 -0.02 2.06 16 41 H 0.07 1.25 7.10 -2.39 -0.02 1.24 16 Total: -1.00 -71.64 355.37 -3.49 -75.13 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: -0.34 Total: 33.13 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: 6.06 Total: 22.78 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -9.81 Total: -135.44 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -0.10 Total: -47.78 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 8.36 SS G_CDS: -1.34 Total: 7.02 kcal Total: -71.64 -3.49 -75.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671619723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.666 kcal (2) G-P(sol) polarization free energy of solvation -71.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds