Wall clock time and date at job start Tue Mar 31 2020 22:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 110.27437 * 2 1 4 4 C 1.34783 * 119.99843 * 57.90862 * 3 2 1 5 5 O 1.21609 * 119.99831 * 0.02562 * 4 3 2 6 6 C 1.47447 * 119.99811 * 180.02562 * 4 3 2 7 7 C 1.37976 * 124.15251 * 179.72941 * 6 4 3 8 8 S 1.72106 * 104.03253 * 179.89946 * 7 6 4 9 9 N 1.56401 * 96.15306 * 0.32563 * 8 7 6 10 10 N 1.27421 * 109.87579 * 359.80009 * 9 8 7 11 11 C 1.54601 * 110.39120 * 122.14094 * 2 1 3 12 12 C 1.54938 * 102.91726 * 140.91568 * 11 2 1 13 13 N 1.48528 * 103.23097 * 322.58954 * 12 11 2 14 14 C 1.46903 * 111.00089 * 159.72013 * 13 12 11 15 15 C 1.50694 * 109.47066 * 52.60302 * 14 13 12 16 16 O 1.21297 * 120.00199 * 359.97438 * 15 14 13 17 17 N 1.34784 * 119.99988 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99735 * 179.72439 * 17 15 14 19 19 H 1.07998 * 120.00618 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99464 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00058 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99669 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47319 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.46816 * 120.00520 * 22 20 18 25 25 H 1.48501 * 109.47099 * 240.00173 * 22 20 18 26 26 C 1.47897 * 105.82095 * 39.20531 * 13 12 11 27 27 H 1.09000 * 109.47314 * 182.09103 * 1 2 3 28 28 H 1.09003 * 109.47241 * 302.08864 * 1 2 3 29 29 H 1.08995 * 109.47169 * 62.08769 * 1 2 3 30 30 H 0.96995 * 120.00307 * 237.91007 * 3 2 1 31 31 H 1.08001 * 127.98835 * 0.02562 * 7 6 4 32 32 H 1.08993 * 110.73005 * 259.27431 * 11 2 1 33 33 H 1.09000 * 110.72025 * 22.38878 * 11 2 1 34 34 H 1.09006 * 110.66744 * 204.15056 * 12 11 2 35 35 H 1.09004 * 110.66538 * 81.02669 * 12 11 2 36 36 H 1.08998 * 109.46809 * 292.60403 * 14 13 12 37 37 H 1.09002 * 109.47056 * 172.60144 * 14 13 12 38 38 H 0.97000 * 119.99339 * 0.02562 * 17 15 14 39 39 H 0.97000 * 119.99610 * 179.97438 * 21 20 18 40 40 H 1.08998 * 109.91818 * 94.02307 * 26 13 12 41 41 H 1.09000 * 109.92045 * 215.12021 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0376 1.3743 0.0000 4 6 1.6894 2.2213 0.9889 5 8 0.9543 1.8446 1.8814 6 6 2.1999 3.6046 0.9886 7 6 1.8950 4.5430 1.9530 8 16 2.7539 5.9484 1.4541 9 7 3.3788 5.3152 0.1678 10 7 3.0053 4.1020 0.0568 11 6 2.0687 -0.7709 1.2270 12 6 3.2881 -1.5326 0.6496 13 7 2.8333 -1.9216 -0.7098 14 6 3.9769 -2.2223 -1.5815 15 6 4.8700 -3.2320 -0.9079 16 8 4.5826 -3.6587 0.1905 17 7 5.9889 -3.6601 -1.5256 18 6 6.8044 -4.5744 -0.9103 19 1 6.5502 -4.9520 0.0691 20 6 7.9576 -5.0162 -1.5474 21 7 8.2667 -4.5572 -2.7393 22 14 9.0685 -6.2625 -0.7094 23 1 8.5022 -6.6176 0.6166 24 1 9.1655 -7.4829 -1.5498 25 1 10.4212 -5.6772 -0.5286 26 6 2.0645 -0.7673 -1.2235 27 1 -0.3634 -1.0270 0.0375 28 1 -0.3634 0.5459 0.8707 29 1 -0.3633 0.4810 -0.9081 30 1 2.6243 1.6746 -0.7116 31 1 1.2646 4.4227 2.8218 32 1 2.3809 -0.0801 2.0101 33 1 1.3194 -1.4668 1.6046 34 1 3.5090 -2.4159 1.2488 35 1 4.1581 -0.8783 0.5917 36 1 4.5397 -1.3083 -1.7707 37 1 3.6164 -2.6293 -2.5263 38 1 6.2193 -3.3180 -2.4035 39 1 9.0719 -4.8654 -3.1838 40 1 2.7148 -0.1204 -1.8123 41 1 1.2347 -1.1173 -1.8375 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671661199.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:43 Heat of formation + Delta-G solvation = 21.448911 kcal Electronic energy + Delta-G solvation = -26819.021242 eV Core-core repulsion = 22862.254079 eV Total energy + Delta-G solvation = -3956.767163 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.53094 -40.31571 -38.80506 -37.54137 -34.71622 -33.81244 -32.74905 -31.53000 -31.15111 -29.56629 -27.51998 -27.51555 -25.44541 -24.40857 -23.63661 -21.63619 -21.08573 -20.07129 -19.36916 -19.09202 -17.88510 -17.24659 -16.43072 -16.23975 -16.07074 -15.84482 -15.33012 -14.85582 -14.73825 -14.53121 -14.28927 -13.95137 -13.49152 -13.37660 -13.17894 -12.97883 -12.56280 -12.52119 -12.37367 -12.08015 -11.78256 -11.55175 -11.30814 -11.19006 -10.98273 -10.82883 -10.80829 -10.76107 -10.49889 -10.35835 -10.34000 -10.24281 -10.18555 -9.52066 -9.26565 -8.39392 -8.03385 -7.91785 -6.43155 -3.83890 -0.37766 0.47383 1.05260 1.09357 2.76909 2.82685 3.15547 3.26408 3.33548 3.42111 3.87847 4.07565 4.23617 4.31040 4.37549 4.56082 4.75414 4.89504 4.92033 5.09080 5.23874 5.37663 5.49799 5.55829 5.63936 5.71198 5.80739 5.89345 5.96492 6.07420 6.19581 6.22581 6.28596 6.41880 6.69064 6.96696 7.18501 7.22714 7.30912 7.54455 7.82459 8.04793 8.60025 9.16689 9.52225 10.03769 10.74605 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.002362 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.855945 B =11853.656634 C =12855.494482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.162 3.838 3 N -0.698 5.698 4 C 0.606 3.394 5 O -0.518 6.518 6 C -0.022 4.022 7 C -0.236 4.236 8 S 0.461 5.539 9 N -0.288 5.288 10 N -0.211 5.211 11 C -0.124 4.124 12 C 0.037 3.963 13 N -0.491 5.491 14 C 0.035 3.965 15 C 0.442 3.558 16 O -0.580 6.580 17 N -0.562 5.562 18 C -0.298 4.298 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.034 3.966 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.408 0.592 31 H 0.209 0.791 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.034 0.966 36 H 0.049 0.951 37 H 0.091 0.909 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.049 0.951 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.034 21.465 4.965 26.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.077 3.923 3 N -0.350 5.350 4 C 0.387 3.613 5 O -0.393 6.393 6 C -0.170 4.170 7 C -0.393 4.393 8 S 0.597 5.403 9 N -0.268 5.268 10 N -0.081 5.081 11 C -0.163 4.163 12 C -0.090 4.090 13 N -0.215 5.215 14 C -0.096 4.096 15 C 0.228 3.772 16 O -0.465 6.465 17 N -0.198 5.198 18 C -0.428 4.428 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.542 5.542 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.095 4.095 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.244 0.756 31 H 0.226 0.774 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.139 0.861 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.109 0.891 38 H 0.226 0.774 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.802 21.616 5.284 26.185 hybrid contribution 0.900 -0.649 -0.268 1.141 sum -12.902 20.967 5.016 25.125 Atomic orbital electron populations 1.22180 0.92941 1.03293 1.02943 1.21318 0.94773 0.79513 0.96718 1.46148 1.50224 1.11883 1.26734 1.16603 0.80468 0.81736 0.82494 1.90818 1.36157 1.76066 1.36255 1.22774 1.01370 0.99012 0.93827 1.28902 1.06559 0.98008 1.05866 1.81586 1.27499 1.16562 1.14696 1.78672 1.23979 1.06568 1.17601 1.71538 1.10353 1.03134 1.23107 1.22948 0.98660 0.98503 0.96162 1.23532 0.94455 1.00404 0.90602 1.64688 1.20657 1.33644 1.02492 1.22128 0.91771 0.98472 0.97278 1.19681 0.83460 0.86479 0.87611 1.90443 1.73912 1.60890 1.21208 1.41857 1.20043 1.38805 1.19079 1.19750 1.01951 1.18056 1.03016 0.87816 1.25272 0.98005 0.98784 0.95898 1.69619 1.26655 1.44256 1.13701 0.85802 0.79431 0.79772 0.79360 1.19196 1.20708 1.20781 1.23261 0.99074 0.91879 0.95311 0.90791 0.90278 0.92726 0.75551 0.77366 0.90751 0.89679 0.86131 0.94722 0.93320 0.89059 0.77449 0.91895 0.93267 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 8.16 37.16 0.30 -1.41 16 2 C 0.16 1.97 0.94 -130.46 -0.12 1.85 16 3 N -0.70 -7.93 5.15 -47.40 -0.24 -8.18 16 4 C 0.61 7.19 7.00 -12.51 -0.09 7.10 16 5 O -0.52 -7.05 13.68 5.27 0.07 -6.98 16 6 C -0.02 -0.23 6.87 -83.78 -0.58 -0.81 16 7 C -0.24 -1.68 11.21 30.64 0.34 -1.34 16 8 S 0.46 2.64 23.38 -107.50 -2.51 0.12 16 9 N -0.29 -2.85 12.49 60.35 0.75 -2.09 16 10 N -0.21 -2.33 11.24 32.73 0.37 -1.96 16 11 C -0.12 -1.77 5.85 -24.87 -0.15 -1.91 16 12 C 0.04 0.64 5.30 -1.90 -0.01 0.63 16 13 N -0.49 -8.14 5.26 -231.90 -1.22 -9.36 16 14 C 0.04 0.63 5.52 -4.98 -0.03 0.60 16 15 C 0.44 10.35 7.49 -10.98 -0.08 10.27 16 16 O -0.58 -15.28 13.09 5.54 0.07 -15.21 16 17 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 18 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 19 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 22 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 C 0.03 0.42 6.15 -2.76 -0.02 0.41 16 27 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 28 H 0.08 0.96 6.03 -51.93 -0.31 0.65 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.41 4.28 7.67 -40.82 -0.31 3.96 16 31 H 0.21 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.07 1.09 6.81 -51.93 -0.35 0.74 16 33 H 0.08 1.20 7.85 -51.93 -0.41 0.79 16 34 H 0.12 2.48 5.97 -51.93 -0.31 2.17 16 35 H 0.03 0.62 8.02 -51.93 -0.42 0.20 16 36 H 0.05 0.80 7.81 -51.93 -0.41 0.39 16 37 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.05 0.57 6.89 -51.93 -0.36 0.21 16 41 H 0.09 1.05 7.69 -51.93 -0.40 0.65 16 LS Contribution 353.72 15.07 5.33 5.33 Total: -1.00 -32.76 353.72 -7.20 -39.96 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -4.80 Total: 12.93 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -0.66 Total: 7.46 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: 0.32 Total: -59.65 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: 0.14 Total: -22.19 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -2.51 Total: 0.12 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.76 -7.20 -39.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671661199.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.407 kcal (2) G-P(sol) polarization free energy of solvation -32.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds