Wall clock time and date at job start Tue Mar 31 2020 22:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 110.27437 * 2 1 4 4 C 1.34783 * 119.99843 * 57.90862 * 3 2 1 5 5 O 1.21609 * 119.99831 * 0.02562 * 4 3 2 6 6 C 1.47447 * 119.99811 * 180.02562 * 4 3 2 7 7 C 1.37976 * 124.15251 * 179.72941 * 6 4 3 8 8 S 1.72106 * 104.03253 * 179.89946 * 7 6 4 9 9 N 1.56401 * 96.15306 * 0.32563 * 8 7 6 10 10 N 1.27421 * 109.87579 * 359.80009 * 9 8 7 11 11 C 1.54601 * 110.39120 * 122.14094 * 2 1 3 12 12 C 1.54938 * 102.91726 * 140.91568 * 11 2 1 13 13 N 1.48528 * 103.23097 * 322.58954 * 12 11 2 14 14 C 1.46903 * 111.00089 * 159.72013 * 13 12 11 15 15 C 1.50694 * 109.47066 * 52.60302 * 14 13 12 16 16 O 1.21297 * 120.00199 * 359.97438 * 15 14 13 17 17 N 1.34784 * 119.99988 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99735 * 179.72439 * 17 15 14 19 19 H 1.07998 * 120.00618 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99464 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00058 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99669 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47319 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.46816 * 120.00520 * 22 20 18 25 25 H 1.48501 * 109.47099 * 240.00173 * 22 20 18 26 26 C 1.47897 * 105.82095 * 39.20531 * 13 12 11 27 27 H 1.09000 * 109.47314 * 182.09103 * 1 2 3 28 28 H 1.09003 * 109.47241 * 302.08864 * 1 2 3 29 29 H 1.08995 * 109.47169 * 62.08769 * 1 2 3 30 30 H 0.96995 * 120.00307 * 237.91007 * 3 2 1 31 31 H 1.08001 * 127.98835 * 0.02562 * 7 6 4 32 32 H 1.08993 * 110.73005 * 259.27431 * 11 2 1 33 33 H 1.09000 * 110.72025 * 22.38878 * 11 2 1 34 34 H 1.09006 * 110.66744 * 204.15056 * 12 11 2 35 35 H 1.09004 * 110.66538 * 81.02669 * 12 11 2 36 36 H 1.08998 * 109.46809 * 292.60403 * 14 13 12 37 37 H 1.09002 * 109.47056 * 172.60144 * 14 13 12 38 38 H 0.97000 * 119.99339 * 0.02562 * 17 15 14 39 39 H 0.97000 * 119.99610 * 179.97438 * 21 20 18 40 40 H 1.08998 * 109.91818 * 94.02307 * 26 13 12 41 41 H 1.09000 * 109.92045 * 215.12021 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0376 1.3743 0.0000 4 6 1.6894 2.2213 0.9889 5 8 0.9543 1.8446 1.8814 6 6 2.1999 3.6046 0.9886 7 6 1.8950 4.5430 1.9530 8 16 2.7539 5.9484 1.4541 9 7 3.3788 5.3152 0.1678 10 7 3.0053 4.1020 0.0568 11 6 2.0687 -0.7709 1.2270 12 6 3.2881 -1.5326 0.6496 13 7 2.8333 -1.9216 -0.7098 14 6 3.9769 -2.2223 -1.5815 15 6 4.8700 -3.2320 -0.9079 16 8 4.5826 -3.6587 0.1905 17 7 5.9889 -3.6601 -1.5256 18 6 6.8044 -4.5744 -0.9103 19 1 6.5502 -4.9520 0.0691 20 6 7.9576 -5.0162 -1.5474 21 7 8.2667 -4.5572 -2.7393 22 14 9.0685 -6.2625 -0.7094 23 1 8.5022 -6.6176 0.6166 24 1 9.1655 -7.4829 -1.5498 25 1 10.4212 -5.6772 -0.5286 26 6 2.0645 -0.7673 -1.2235 27 1 -0.3634 -1.0270 0.0375 28 1 -0.3634 0.5459 0.8707 29 1 -0.3633 0.4810 -0.9081 30 1 2.6243 1.6746 -0.7116 31 1 1.2646 4.4227 2.8218 32 1 2.3809 -0.0801 2.0101 33 1 1.3194 -1.4668 1.6046 34 1 3.5090 -2.4159 1.2488 35 1 4.1581 -0.8783 0.5917 36 1 4.5397 -1.3083 -1.7707 37 1 3.6164 -2.6293 -2.5263 38 1 6.2193 -3.3180 -2.4035 39 1 9.0719 -4.8654 -3.1838 40 1 2.7148 -0.1204 -1.8123 41 1 1.2347 -1.1173 -1.8375 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671661199.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:42 Heat of formation + Delta-G solvation = -5.827027 kcal Electronic energy + Delta-G solvation = -26820.204016 eV Core-core repulsion = 22862.254079 eV Total energy + Delta-G solvation = -3957.949937 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.27846 -41.32728 -40.27370 -38.95619 -36.17715 -35.48842 -33.56536 -33.30354 -32.36768 -30.73767 -28.91593 -28.17096 -26.92574 -25.68613 -24.78944 -22.83270 -21.91944 -21.15006 -20.92631 -20.10112 -19.84016 -18.15903 -17.67004 -17.18549 -17.09646 -16.81036 -16.66131 -16.32572 -16.05442 -15.83997 -15.58000 -15.49259 -14.84255 -14.74892 -14.22229 -14.07791 -13.69724 -13.64558 -13.46323 -13.25028 -13.07094 -12.96227 -12.93460 -12.45967 -12.40708 -12.34171 -12.12086 -12.00586 -11.97434 -11.48555 -11.39496 -11.17988 -11.10379 -10.92378 -10.30651 -10.11493 -10.00521 -9.38403 -8.47892 -5.96204 -0.95572 -0.06327 0.29342 0.51622 1.35299 1.40791 1.54852 1.91860 1.99257 2.02918 2.27884 2.69361 2.87025 3.18796 3.24942 3.45767 3.62376 3.71283 3.83983 3.90487 4.23458 4.27047 4.31333 4.34417 4.46590 4.49181 4.59471 4.73177 4.81231 4.88025 4.96257 5.07873 5.23256 5.31609 5.39703 5.42534 5.79978 5.91108 6.07505 6.21267 6.50942 6.59525 6.95386 7.12107 7.54413 8.10415 8.69835 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.002362 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.855945 B =11853.656634 C =12855.494482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.169 3.831 3 N -0.696 5.696 4 C 0.606 3.394 5 O -0.541 6.541 6 C -0.047 4.047 7 C -0.236 4.236 8 S 0.560 5.440 9 N -0.333 5.333 10 N -0.236 5.236 11 C -0.115 4.115 12 C 0.043 3.957 13 N -0.504 5.504 14 C 0.046 3.954 15 C 0.438 3.562 16 O -0.614 6.614 17 N -0.572 5.572 18 C -0.330 4.330 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.992 3.008 23 H -0.274 1.274 24 H -0.270 1.270 25 H -0.271 1.271 26 C 0.036 3.964 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.413 0.587 31 H 0.230 0.770 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.022 0.978 36 H 0.069 0.931 37 H 0.116 0.884 38 H 0.396 0.604 39 H 0.278 0.722 40 H 0.066 0.934 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.718 23.242 4.533 27.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.083 3.917 3 N -0.348 5.348 4 C 0.388 3.612 5 O -0.418 6.418 6 C -0.195 4.195 7 C -0.392 4.392 8 S 0.696 5.304 9 N -0.314 5.314 10 N -0.105 5.105 11 C -0.154 4.154 12 C -0.085 4.085 13 N -0.228 5.228 14 C -0.085 4.085 15 C 0.226 3.774 16 O -0.500 6.500 17 N -0.210 5.210 18 C -0.460 4.460 19 H 0.097 0.903 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.816 3.184 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.092 4.092 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.250 0.750 31 H 0.247 0.753 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.041 0.959 36 H 0.087 0.913 37 H 0.134 0.866 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.487 23.416 4.812 27.952 hybrid contribution 1.067 -1.050 -0.028 1.498 sum -13.419 22.366 4.784 26.518 Atomic orbital electron populations 1.22116 0.91633 1.03580 1.03313 1.21211 0.95607 0.79725 0.95185 1.46099 1.50254 1.11451 1.26955 1.16805 0.79977 0.82397 0.82003 1.90800 1.37233 1.76743 1.36991 1.22627 1.02816 0.98797 0.95286 1.29292 1.06084 0.98240 1.05607 1.81211 1.24347 1.13641 1.11243 1.78330 1.25817 1.06639 1.20627 1.71564 1.11093 1.03842 1.24010 1.22825 0.97329 0.98271 0.96946 1.23260 0.95423 0.98696 0.91121 1.64661 1.20114 1.36075 1.01998 1.22041 0.91467 0.97501 0.97491 1.20716 0.83163 0.86379 0.87140 1.90446 1.74596 1.62098 1.22853 1.41922 1.20666 1.39040 1.19331 1.19681 1.03590 1.19916 1.02806 0.90319 1.26033 0.98687 1.00133 0.96450 1.69676 1.27204 1.44889 1.14382 0.84885 0.77680 0.77760 0.78108 1.19825 1.19535 1.19656 1.23353 0.99389 0.90831 0.95613 0.90408 0.91391 0.90970 0.74974 0.75313 0.91433 0.89742 0.90130 0.95933 0.91319 0.86625 0.77004 0.91302 0.91547 0.86750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.16 71.98 0.59 -2.41 16 2 C 0.17 3.89 0.94 4.48 0.00 3.89 16 3 N -0.70 -15.12 5.15 -422.13 -2.17 -17.30 16 4 C 0.61 13.94 7.00 86.67 0.61 14.55 16 5 O -0.54 -14.43 13.68 -4.06 -0.06 -14.48 16 6 C -0.05 -0.92 6.87 41.36 0.28 -0.64 16 7 C -0.24 -2.87 11.21 67.76 0.76 -2.11 16 8 S 0.56 5.00 23.38 -56.49 -1.32 3.68 16 9 N -0.33 -6.15 12.49 37.02 0.46 -5.69 16 10 N -0.24 -5.02 11.24 -50.35 -0.57 -5.59 16 11 C -0.11 -3.30 5.85 31.80 0.19 -3.11 16 12 C 0.04 1.51 5.30 86.65 0.46 1.97 16 13 N -0.50 -16.36 5.26 -887.59 -4.67 -21.02 16 14 C 0.05 1.61 5.52 85.55 0.47 2.08 16 15 C 0.44 20.95 7.49 87.65 0.66 21.61 16 16 O -0.61 -33.68 13.09 -3.08 -0.04 -33.72 16 17 N -0.57 -29.54 5.29 -306.97 -1.62 -31.16 16 18 C -0.33 -18.86 9.68 84.04 0.81 -18.05 16 19 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 20 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 21 N -0.92 -49.96 13.05 21.66 0.28 -49.68 16 22 Si 0.99 43.31 29.55 68.60 2.03 45.34 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 26 C 0.04 0.83 6.15 86.45 0.53 1.36 16 27 H 0.08 1.51 8.11 -2.39 -0.02 1.49 16 28 H 0.07 1.57 6.03 -2.39 -0.01 1.55 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.41 8.20 7.67 -92.71 -0.71 7.49 16 31 H 0.23 1.65 8.06 -2.91 -0.02 1.63 16 32 H 0.07 2.03 6.81 -2.39 -0.02 2.01 16 33 H 0.08 2.42 7.85 -2.39 -0.02 2.40 16 34 H 0.08 3.52 5.97 -2.38 -0.01 3.51 16 35 H 0.02 0.83 8.02 -2.39 -0.02 0.81 16 36 H 0.07 2.13 7.81 -2.39 -0.02 2.12 16 37 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 38 H 0.40 19.42 7.90 -92.71 -0.73 18.69 16 39 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 40 H 0.07 1.34 6.89 -2.39 -0.02 1.33 16 41 H 0.11 2.21 7.69 -2.39 -0.02 2.19 16 Total: -1.00 -73.20 353.72 -2.18 -75.38 By element: Atomic # 1 Polarization: 35.69 SS G_CDS: -0.33 Total: 35.36 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: 5.83 Total: 18.89 kcal Atomic # 7 Polarization: -122.16 SS G_CDS: -8.28 Total: -130.44 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: -0.10 Total: -48.20 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -1.32 Total: 3.68 kcal Total: -73.20 -2.18 -75.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671661199.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.550 kcal (2) G-P(sol) polarization free energy of solvation -73.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds