Wall clock time and date at job start Tue Mar 31 2020 22:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 110.27408 * 2 1 4 4 C 1.34779 * 119.99554 * 300.69816 * 3 2 1 5 5 O 1.21599 * 120.00083 * 359.97438 * 4 3 2 6 6 C 1.47452 * 119.99915 * 180.02562 * 4 3 2 7 7 C 1.37983 * 124.15581 * 180.02562 * 6 4 3 8 8 S 1.72098 * 104.03340 * 180.20197 * 7 6 4 9 9 N 1.56415 * 96.15443 * 359.65494 * 8 7 6 10 10 N 1.27412 * 109.87388 * 0.35682 * 9 8 7 11 11 C 1.54595 * 110.30962 * 237.90786 * 2 1 3 12 12 C 1.55196 * 102.80137 * 219.04989 * 11 2 1 13 13 N 1.48531 * 103.23789 * 37.43059 * 12 11 2 14 14 C 1.46898 * 111.00391 * 200.25293 * 13 12 11 15 15 C 1.50700 * 109.47444 * 287.40266 * 14 13 12 16 16 O 1.21294 * 119.99812 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99897 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00066 * 179.97438 * 17 15 14 19 19 H 1.08010 * 119.99668 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00479 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99583 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00064 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47417 * 90.00107 * 22 20 18 24 24 H 1.48502 * 109.46948 * 210.00166 * 22 20 18 25 25 H 1.48500 * 109.47454 * 329.99882 * 22 20 18 26 26 C 1.47901 * 105.82425 * 320.77256 * 13 12 11 27 27 H 1.08998 * 109.46817 * 59.30375 * 1 2 3 28 28 H 1.08997 * 109.47021 * 179.30286 * 1 2 3 29 29 H 1.09001 * 109.46946 * 299.30646 * 1 2 3 30 30 H 0.96996 * 120.00317 * 120.70426 * 3 2 1 31 31 H 1.08002 * 127.98030 * 359.93167 * 7 6 4 32 32 H 1.08997 * 110.72483 * 337.38326 * 11 2 1 33 33 H 1.09001 * 110.72590 * 100.67138 * 11 2 1 34 34 H 1.09004 * 110.68596 * 278.98862 * 12 11 2 35 35 H 1.08994 * 110.78555 * 155.93122 * 12 11 2 36 36 H 1.09004 * 109.46987 * 47.40112 * 14 13 12 37 37 H 1.09000 * 109.47636 * 167.39777 * 14 13 12 38 38 H 0.97006 * 120.00332 * 359.97438 * 17 15 14 39 39 H 0.96999 * 119.99616 * 179.97438 * 21 20 18 40 40 H 1.09005 * 109.91743 * 265.97796 * 26 13 12 41 41 H 1.08999 * 109.91855 * 144.68058 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0377 1.3743 0.0000 4 6 1.7122 2.2128 -1.0037 5 8 0.9975 1.8286 -1.9094 6 6 2.2235 3.5958 -1.0041 7 6 1.9447 4.5246 -1.9857 8 16 2.7937 5.9337 -1.4802 9 7 3.3845 5.3131 -0.1716 10 7 3.0084 4.1010 -0.0590 11 6 2.0666 -0.7703 -1.2283 12 6 3.2882 -1.5326 -0.6494 13 7 2.8334 -1.9215 0.7101 14 6 3.9768 -2.2223 1.5819 15 6 4.5877 -3.5379 1.1732 16 8 4.1165 -4.1637 0.2472 17 7 5.6575 -4.0191 1.8368 18 6 6.2129 -5.2163 1.4654 19 1 5.7934 -5.7735 0.6408 20 6 7.3162 -5.7122 2.1492 21 7 7.8269 -5.0339 3.1522 22 14 8.0734 -7.3430 1.6426 23 1 9.1250 -7.1046 0.6217 24 1 8.6764 -7.9990 2.8306 25 1 7.0207 -8.2219 1.0730 26 6 2.0645 -0.7671 1.2237 27 1 -0.3633 0.5246 -0.8837 28 1 -0.3633 -1.0276 -0.0125 29 1 -0.3633 0.5030 0.8962 30 1 2.6081 1.6806 0.7222 31 1 1.3378 4.3955 -2.8697 32 1 1.3180 -1.4681 -1.6032 33 1 2.3775 -0.0789 -2.0115 34 1 4.1582 -0.8784 -0.5914 35 1 3.5119 -2.4159 -1.2475 36 1 4.7216 -1.4317 1.4899 37 1 3.6387 -2.2843 2.6162 38 1 6.0345 -3.5185 2.5772 39 1 8.5969 -5.3803 3.6297 40 1 2.7148 -0.1202 1.8125 41 1 1.2327 -1.1173 1.8348 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671661202.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:46 Heat of formation + Delta-G solvation = 18.701384 kcal Electronic energy + Delta-G solvation = -26676.446405 eV Core-core repulsion = 22719.560100 eV Total energy + Delta-G solvation = -3956.886305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.56519 -40.34083 -38.72235 -37.57308 -34.74617 -33.78991 -32.78438 -31.52517 -31.11182 -29.64433 -27.54742 -27.54240 -25.46223 -24.41983 -23.68412 -21.69169 -21.12595 -20.11089 -19.35126 -19.08419 -17.86802 -17.27931 -16.46715 -16.25207 -16.11845 -15.94309 -15.21124 -14.89312 -14.70211 -14.57311 -14.32858 -13.95120 -13.53101 -13.34733 -13.19154 -13.01581 -12.58677 -12.54719 -12.40902 -12.11203 -11.77992 -11.47921 -11.35658 -11.24453 -11.02989 -10.95052 -10.81683 -10.74479 -10.53266 -10.38768 -10.37522 -10.24853 -10.19262 -9.47428 -9.31827 -8.48362 -8.00058 -7.92074 -6.39340 -3.79933 -0.40893 0.44283 1.01735 1.06253 2.72994 2.78760 3.19417 3.27869 3.33945 3.38674 3.93315 4.04700 4.20893 4.28649 4.33945 4.52149 4.69711 4.83830 4.88166 5.14295 5.25702 5.32338 5.41663 5.47290 5.60309 5.70571 5.78816 5.82244 5.90987 5.96857 6.15953 6.16751 6.29724 6.36141 6.42978 6.92979 7.12415 7.16405 7.26318 7.57532 7.78506 8.08785 8.64676 9.20911 9.57297 10.09451 10.78610 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018582 B = 0.002198 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.501494 B =12735.567118 C =13593.755444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.163 3.837 3 N -0.699 5.699 4 C 0.606 3.394 5 O -0.518 6.518 6 C -0.023 4.023 7 C -0.236 4.236 8 S 0.461 5.539 9 N -0.288 5.288 10 N -0.211 5.211 11 C -0.120 4.120 12 C 0.039 3.961 13 N -0.486 5.486 14 C 0.035 3.965 15 C 0.446 3.554 16 O -0.576 6.576 17 N -0.566 5.566 18 C -0.297 4.297 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.930 3.070 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.035 3.965 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.408 0.592 31 H 0.209 0.791 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.101 0.899 36 H 0.050 0.950 37 H 0.089 0.911 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.050 0.950 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.294 23.789 -6.762 27.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.077 3.923 3 N -0.351 5.351 4 C 0.387 3.613 5 O -0.392 6.392 6 C -0.170 4.170 7 C -0.393 4.393 8 S 0.597 5.403 9 N -0.268 5.268 10 N -0.081 5.081 11 C -0.159 4.159 12 C -0.088 4.088 13 N -0.210 5.210 14 C -0.096 4.096 15 C 0.231 3.769 16 O -0.459 6.459 17 N -0.203 5.203 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.757 3.243 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.094 4.094 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.245 0.755 31 H 0.226 0.774 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.119 0.881 36 H 0.068 0.932 37 H 0.107 0.893 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.205 23.804 -6.964 27.642 hybrid contribution 0.839 -0.755 0.282 1.163 sum -11.366 23.049 -6.682 26.554 Atomic orbital electron populations 1.22173 0.92863 1.03326 1.02957 1.21309 0.94868 0.79503 0.96595 1.46156 1.51480 1.12065 1.25358 1.16603 0.80283 0.81747 0.82664 1.90824 1.36890 1.75651 1.35878 1.22776 1.01792 0.99061 0.93397 1.28907 1.06413 0.98136 1.05869 1.81602 1.28706 1.16551 1.13419 1.78672 1.23991 1.06759 1.17401 1.71536 1.10219 1.02937 1.23451 1.22921 0.98299 0.98468 0.96224 1.23375 0.95191 0.99598 0.90669 1.64547 1.20934 1.33521 1.02025 1.22093 0.92360 0.97375 0.97800 1.19670 0.83242 0.87728 0.86233 1.90511 1.63391 1.60755 1.31269 1.41859 1.26562 1.20818 1.31097 1.19692 1.10327 0.96930 1.15711 0.87937 1.25253 0.97047 0.99748 0.95975 1.69613 1.24456 1.39251 1.21150 0.85864 0.79173 0.81442 0.77855 1.20471 1.20950 1.19404 1.23235 0.99030 0.91818 0.95335 0.90419 0.90681 0.92633 0.75518 0.77361 0.89445 0.90490 0.94460 0.88115 0.93191 0.89255 0.77541 0.91923 0.93198 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 8.14 37.16 0.30 -1.36 16 2 C 0.16 1.90 0.94 -130.46 -0.12 1.78 16 3 N -0.70 -7.49 5.15 -47.40 -0.24 -7.73 16 4 C 0.61 6.83 7.00 -12.51 -0.09 6.75 16 5 O -0.52 -6.78 13.66 5.28 0.07 -6.71 16 6 C -0.02 -0.22 6.87 -83.77 -0.58 -0.80 16 7 C -0.24 -1.58 11.21 30.64 0.34 -1.23 16 8 S 0.46 2.45 23.38 -107.50 -2.51 -0.07 16 9 N -0.29 -2.71 12.49 60.35 0.75 -1.96 16 10 N -0.21 -2.21 11.24 32.74 0.37 -1.85 16 11 C -0.12 -1.63 5.85 -24.73 -0.14 -1.77 16 12 C 0.04 0.63 5.94 -1.76 -0.01 0.62 16 13 N -0.49 -8.02 4.91 -231.72 -1.14 -9.15 16 14 C 0.04 0.63 5.19 -4.98 -0.03 0.61 16 15 C 0.45 10.59 7.61 -10.99 -0.08 10.50 16 16 O -0.58 -15.63 14.64 5.55 0.08 -15.54 16 17 N -0.57 -14.45 5.29 -10.96 -0.06 -14.50 16 18 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 19 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.76 13.05 55.50 0.72 -24.04 16 22 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 C 0.03 0.43 6.12 -2.75 -0.02 0.41 16 27 H 0.08 0.92 6.17 -51.93 -0.32 0.60 16 28 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.41 3.98 7.68 -40.82 -0.31 3.67 16 31 H 0.21 0.94 8.06 -52.49 -0.42 0.51 16 32 H 0.09 1.20 7.86 -51.93 -0.41 0.79 16 33 H 0.08 1.06 6.68 -51.93 -0.35 0.71 16 34 H 0.04 0.59 7.81 -51.93 -0.41 0.19 16 35 H 0.10 1.92 7.10 -51.93 -0.37 1.56 16 36 H 0.05 0.82 7.83 -51.93 -0.41 0.41 16 37 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16 38 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 39 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.05 0.55 7.10 -51.93 -0.37 0.18 16 41 H 0.09 1.08 7.68 -51.93 -0.40 0.68 16 LS Contribution 356.41 15.07 5.37 5.37 Total: -1.00 -33.59 356.41 -7.12 -40.71 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -4.86 Total: 11.76 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -0.66 Total: 7.50 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: 0.41 Total: -59.23 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.15 Total: -22.26 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.51 Total: -0.07 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.59 -7.12 -40.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671661202.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.414 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds