Wall clock time and date at job start Tue Mar 31 2020 22:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 110.27408 * 2 1 4 4 C 1.34779 * 119.99554 * 300.69816 * 3 2 1 5 5 O 1.21599 * 120.00083 * 359.97438 * 4 3 2 6 6 C 1.47452 * 119.99915 * 180.02562 * 4 3 2 7 7 C 1.37983 * 124.15581 * 180.02562 * 6 4 3 8 8 S 1.72098 * 104.03340 * 180.20197 * 7 6 4 9 9 N 1.56415 * 96.15443 * 359.65494 * 8 7 6 10 10 N 1.27412 * 109.87388 * 0.35682 * 9 8 7 11 11 C 1.54595 * 110.30962 * 237.90786 * 2 1 3 12 12 C 1.55196 * 102.80137 * 219.04989 * 11 2 1 13 13 N 1.48531 * 103.23789 * 37.43059 * 12 11 2 14 14 C 1.46898 * 111.00391 * 200.25293 * 13 12 11 15 15 C 1.50700 * 109.47444 * 287.40266 * 14 13 12 16 16 O 1.21294 * 119.99812 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99897 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00066 * 179.97438 * 17 15 14 19 19 H 1.08010 * 119.99668 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00479 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99583 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00064 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47417 * 90.00107 * 22 20 18 24 24 H 1.48502 * 109.46948 * 210.00166 * 22 20 18 25 25 H 1.48500 * 109.47454 * 329.99882 * 22 20 18 26 26 C 1.47901 * 105.82425 * 320.77256 * 13 12 11 27 27 H 1.08998 * 109.46817 * 59.30375 * 1 2 3 28 28 H 1.08997 * 109.47021 * 179.30286 * 1 2 3 29 29 H 1.09001 * 109.46946 * 299.30646 * 1 2 3 30 30 H 0.96996 * 120.00317 * 120.70426 * 3 2 1 31 31 H 1.08002 * 127.98030 * 359.93167 * 7 6 4 32 32 H 1.08997 * 110.72483 * 337.38326 * 11 2 1 33 33 H 1.09001 * 110.72590 * 100.67138 * 11 2 1 34 34 H 1.09004 * 110.68596 * 278.98862 * 12 11 2 35 35 H 1.08994 * 110.78555 * 155.93122 * 12 11 2 36 36 H 1.09004 * 109.46987 * 47.40112 * 14 13 12 37 37 H 1.09000 * 109.47636 * 167.39777 * 14 13 12 38 38 H 0.97006 * 120.00332 * 359.97438 * 17 15 14 39 39 H 0.96999 * 119.99616 * 179.97438 * 21 20 18 40 40 H 1.09005 * 109.91743 * 265.97796 * 26 13 12 41 41 H 1.08999 * 109.91855 * 144.68058 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0377 1.3743 0.0000 4 6 1.7122 2.2128 -1.0037 5 8 0.9975 1.8286 -1.9094 6 6 2.2235 3.5958 -1.0041 7 6 1.9447 4.5246 -1.9857 8 16 2.7937 5.9337 -1.4802 9 7 3.3845 5.3131 -0.1716 10 7 3.0084 4.1010 -0.0590 11 6 2.0666 -0.7703 -1.2283 12 6 3.2882 -1.5326 -0.6494 13 7 2.8334 -1.9215 0.7101 14 6 3.9768 -2.2223 1.5819 15 6 4.5877 -3.5379 1.1732 16 8 4.1165 -4.1637 0.2472 17 7 5.6575 -4.0191 1.8368 18 6 6.2129 -5.2163 1.4654 19 1 5.7934 -5.7735 0.6408 20 6 7.3162 -5.7122 2.1492 21 7 7.8269 -5.0339 3.1522 22 14 8.0734 -7.3430 1.6426 23 1 9.1250 -7.1046 0.6217 24 1 8.6764 -7.9990 2.8306 25 1 7.0207 -8.2219 1.0730 26 6 2.0645 -0.7671 1.2237 27 1 -0.3633 0.5246 -0.8837 28 1 -0.3633 -1.0276 -0.0125 29 1 -0.3633 0.5030 0.8962 30 1 2.6081 1.6806 0.7222 31 1 1.3378 4.3955 -2.8697 32 1 1.3180 -1.4681 -1.6032 33 1 2.3775 -0.0789 -2.0115 34 1 4.1582 -0.8784 -0.5914 35 1 3.5119 -2.4159 -1.2475 36 1 4.7216 -1.4317 1.4899 37 1 3.6387 -2.2843 2.6162 38 1 6.0345 -3.5185 2.5772 39 1 8.5969 -5.3803 3.6297 40 1 2.7148 -0.1202 1.8125 41 1 1.2327 -1.1173 1.8348 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671661202.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:45 Heat of formation + Delta-G solvation = -9.043037 kcal Electronic energy + Delta-G solvation = -26677.649493 eV Core-core repulsion = 22719.560100 eV Total energy + Delta-G solvation = -3958.089394 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.26873 -41.28527 -40.18142 -39.00656 -36.11294 -35.55001 -33.55569 -33.25580 -32.36168 -30.76381 -28.92370 -28.16124 -26.92079 -25.69492 -24.80310 -22.83516 -21.91652 -21.08482 -20.93380 -20.07232 -19.85908 -18.15252 -17.74037 -17.15950 -17.09583 -16.75700 -16.61089 -16.22552 -16.12507 -15.84078 -15.54869 -15.48868 -14.86097 -14.68967 -14.20950 -14.15395 -13.70502 -13.62839 -13.43446 -13.28178 -13.02490 -12.95893 -12.92083 -12.46766 -12.41478 -12.39995 -12.11936 -12.02425 -11.94299 -11.47945 -11.39079 -11.16877 -11.11432 -10.91527 -10.31913 -10.22067 -9.99892 -9.36559 -8.46044 -5.94384 -0.94632 -0.05474 0.30366 0.52517 1.37711 1.41213 1.54067 1.91929 1.99903 2.06898 2.28960 2.69602 2.83950 3.20398 3.28698 3.45914 3.63178 3.66881 3.84726 3.89615 4.20990 4.26783 4.28734 4.35479 4.42002 4.49822 4.55681 4.72455 4.80038 4.84866 4.92474 5.06158 5.09447 5.30517 5.39777 5.41822 5.80322 5.91274 6.07433 6.21960 6.51989 6.61801 6.96333 7.14131 7.57715 8.14035 8.71566 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018582 B = 0.002198 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.501494 B =12735.567118 C =13593.755444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.170 3.830 3 N -0.695 5.695 4 C 0.607 3.393 5 O -0.541 6.541 6 C -0.047 4.047 7 C -0.236 4.236 8 S 0.559 5.441 9 N -0.333 5.333 10 N -0.235 5.235 11 C -0.111 4.111 12 C 0.042 3.958 13 N -0.507 5.507 14 C 0.048 3.952 15 C 0.442 3.558 16 O -0.615 6.615 17 N -0.576 5.576 18 C -0.331 4.331 19 H 0.078 0.922 20 C -0.014 4.014 21 N -0.921 5.921 22 Si 0.992 3.008 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.273 1.273 26 C 0.038 3.962 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.414 0.586 31 H 0.230 0.770 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.115 0.885 38 H 0.396 0.604 39 H 0.277 0.723 40 H 0.070 0.930 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.652 25.733 -6.437 29.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.084 3.916 3 N -0.347 5.347 4 C 0.389 3.611 5 O -0.418 6.418 6 C -0.195 4.195 7 C -0.392 4.392 8 S 0.694 5.306 9 N -0.314 5.314 10 N -0.104 5.104 11 C -0.150 4.150 12 C -0.086 4.086 13 N -0.231 5.231 14 C -0.084 4.084 15 C 0.230 3.770 16 O -0.501 6.501 17 N -0.214 5.214 18 C -0.460 4.460 19 H 0.096 0.904 20 C -0.214 4.214 21 N -0.563 5.563 22 Si 0.816 3.184 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.198 1.198 26 C -0.090 4.090 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.252 0.748 31 H 0.246 0.754 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.133 0.867 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.554 25.781 -6.603 29.426 hybrid contribution 0.915 -1.211 0.077 1.520 sum -11.639 24.571 -6.525 27.960 Atomic orbital electron populations 1.22110 0.91853 1.03430 1.03273 1.21167 0.95487 0.79814 0.95131 1.46080 1.51482 1.11525 1.25594 1.16795 0.79771 0.82382 0.82177 1.90808 1.37997 1.76329 1.36650 1.22624 1.03228 0.98826 0.94791 1.29289 1.05883 0.98381 1.05679 1.81241 1.25628 1.13708 1.10038 1.78339 1.25777 1.06843 1.20406 1.71562 1.10930 1.03602 1.24296 1.22808 0.97036 0.98205 0.96988 1.23214 0.96475 0.98192 0.90680 1.64460 1.20555 1.36157 1.01934 1.21961 0.93205 0.94109 0.99079 1.20745 0.82163 0.89204 0.84922 1.90487 1.64278 1.62484 1.32826 1.41928 1.27321 1.20497 1.31621 1.19640 1.11760 0.98436 1.16190 0.90424 1.26023 0.96819 1.02823 0.95686 1.69672 1.24700 1.40444 1.21448 0.84945 0.78171 0.77344 0.77990 1.19706 1.19486 1.19809 1.23298 0.99220 0.90796 0.95709 0.91432 0.90637 0.90996 0.74835 0.75367 0.89950 0.90788 0.94344 0.91942 0.91243 0.86687 0.77038 0.91343 0.91142 0.87255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.14 71.98 0.59 -2.39 16 2 C 0.17 3.76 0.94 4.48 0.00 3.76 16 3 N -0.69 -14.05 5.15 -422.13 -2.17 -16.22 16 4 C 0.61 13.13 7.00 86.67 0.61 13.74 16 5 O -0.54 -13.81 13.66 -4.03 -0.06 -13.87 16 6 C -0.05 -0.85 6.87 41.36 0.28 -0.57 16 7 C -0.24 -2.63 11.21 67.76 0.76 -1.87 16 8 S 0.56 4.48 23.38 -56.49 -1.32 3.16 16 9 N -0.33 -5.77 12.49 37.02 0.46 -5.31 16 10 N -0.23 -4.68 11.24 -50.34 -0.57 -5.25 16 11 C -0.11 -3.03 5.85 31.89 0.19 -2.84 16 12 C 0.04 1.39 5.94 86.74 0.52 1.91 16 13 N -0.51 -16.37 4.91 -887.02 -4.35 -20.72 16 14 C 0.05 1.66 5.19 85.56 0.44 2.10 16 15 C 0.44 21.38 7.61 87.66 0.67 22.05 16 16 O -0.62 -34.63 14.64 -3.07 -0.04 -34.67 16 17 N -0.58 -29.95 5.29 -306.98 -1.62 -31.57 16 18 C -0.33 -19.03 9.68 84.04 0.81 -18.22 16 19 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 20 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 21 N -0.92 -50.26 13.05 21.66 0.28 -49.98 16 22 Si 0.99 43.54 29.55 68.60 2.03 45.57 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 26 C 0.04 0.85 6.12 86.45 0.53 1.38 16 27 H 0.07 1.53 6.17 -2.39 -0.01 1.51 16 28 H 0.07 1.50 8.13 -2.39 -0.02 1.48 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 30 H 0.41 7.48 7.68 -92.71 -0.71 6.77 16 31 H 0.23 1.45 8.06 -2.91 -0.02 1.43 16 32 H 0.08 2.30 7.86 -2.39 -0.02 2.28 16 33 H 0.07 2.05 6.68 -2.39 -0.02 2.04 16 34 H 0.04 1.23 7.81 -2.39 -0.02 1.22 16 35 H 0.06 2.53 7.10 -2.39 -0.02 2.51 16 36 H 0.07 2.16 7.83 -2.38 -0.02 2.14 16 37 H 0.12 3.42 8.08 -2.39 -0.02 3.40 16 38 H 0.40 19.50 7.90 -92.70 -0.73 18.76 16 39 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 40 H 0.07 1.34 7.10 -2.38 -0.02 1.33 16 41 H 0.11 2.20 7.68 -2.39 -0.02 2.18 16 Total: -1.00 -74.63 356.41 -1.83 -76.47 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: -0.33 Total: 33.64 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 5.86 Total: 18.76 kcal Atomic # 7 Polarization: -121.08 SS G_CDS: -7.97 Total: -129.05 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -0.10 Total: -48.54 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.32 Total: 3.16 kcal Total: -74.63 -1.83 -76.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671661202.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.423 kcal (2) G-P(sol) polarization free energy of solvation -74.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds