Wall clock time and date at job start Tue Mar 31 2020 22:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34898 * 116.99474 * 2 1 4 4 O 1.21624 * 120.00122 * 359.71459 * 3 2 1 5 5 C 1.46476 * 119.99928 * 179.97438 * 3 2 1 6 6 O 1.34937 * 125.99062 * 359.40872 * 5 3 2 7 7 C 1.33919 * 109.37728 * 179.86427 * 6 5 3 8 8 C 1.50697 * 125.61193 * 180.15828 * 7 6 5 9 9 N 1.46498 * 109.47329 * 270.28811 * 8 7 6 10 10 C 1.34773 * 119.99700 * 179.97438 * 9 8 7 11 11 O 1.21586 * 120.00681 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99642 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99936 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.47452 * 180.02562 * 13 12 10 15 15 O 1.21296 * 119.99504 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00289 * 180.02562 * 14 13 12 17 17 C 1.37096 * 120.00000 * 179.97438 * 16 14 13 18 18 H 1.08006 * 120.00012 * 0.02562 * 17 16 14 19 19 C 1.38948 * 120.00128 * 179.97438 * 17 16 14 20 20 N 1.31418 * 119.99922 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00127 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47176 * 90.00546 * 21 19 17 23 23 H 1.48506 * 109.47093 * 210.00431 * 21 19 17 24 24 H 1.48504 * 109.47197 * 330.00149 * 21 19 17 25 25 C 1.35166 * 108.78005 * 0.40781 * 7 6 5 26 26 C 1.36635 * 125.99700 * 179.72126 * 5 3 2 27 27 C 1.50702 * 126.64815 * 359.95847 * 26 5 3 28 28 H 1.08996 * 109.47621 * 300.00233 * 1 2 3 29 29 H 1.09001 * 109.47124 * 60.00685 * 1 2 3 30 30 H 1.09002 * 109.46831 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46662 * 30.28694 * 8 7 6 32 32 H 1.08999 * 109.47087 * 150.28466 * 8 7 6 33 33 H 0.97001 * 120.00052 * 359.97438 * 9 8 7 34 34 H 0.97001 * 120.00110 * 0.02562 * 12 10 9 35 35 H 1.09001 * 109.46964 * 300.00274 * 13 12 10 36 36 H 1.09000 * 109.47190 * 60.00204 * 13 12 10 37 37 H 0.97001 * 119.99848 * 359.97438 * 16 14 13 38 38 H 0.96997 * 119.99642 * 179.97438 * 20 19 17 39 39 H 1.07999 * 126.43887 * 179.74068 * 25 7 6 40 40 H 1.09000 * 109.47202 * 89.99766 * 27 26 5 41 41 H 1.08998 * 109.46950 * 209.99918 * 27 26 5 42 42 H 1.09000 * 109.47215 * 329.99766 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2020 0.0000 4 8 1.4019 2.2220 -0.0052 5 6 3.5271 1.2788 0.0006 6 8 4.3762 0.2301 0.0124 7 6 5.6376 0.6797 0.0059 8 6 6.8755 -0.1797 0.0117 9 7 7.2752 -0.4510 1.3947 10 6 8.3631 -1.2057 1.6460 11 8 9.0131 -1.6612 0.7249 12 7 8.7312 -1.4549 2.9184 13 6 9.9141 -2.2748 3.1916 14 6 10.1050 -2.4007 4.6811 15 8 9.3296 -1.8583 5.4399 16 7 11.1380 -3.1150 5.1702 17 6 11.3120 -3.2290 6.5253 18 1 10.6210 -2.7467 7.2009 19 6 12.3767 -3.9658 7.0295 20 7 13.2171 -4.5531 6.2074 21 14 12.6133 -4.1217 8.8758 22 1 11.8777 -5.3131 9.3703 23 1 14.0594 -4.2720 9.1786 24 1 12.0911 -2.9040 9.5464 25 6 5.6179 2.0312 -0.0012 26 6 4.2711 2.4248 -0.0047 27 6 3.7468 3.8376 -0.0131 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 6.6669 -1.1207 -0.4974 32 1 7.6820 0.3414 -0.5041 33 1 6.7569 -0.0873 2.1296 34 1 8.2129 -1.0912 3.6533 35 1 9.7773 -3.2656 2.7582 36 1 10.7925 -1.8036 2.7509 37 1 11.7583 -3.5484 4.5634 38 1 13.9605 -5.0671 6.5594 39 1 6.4773 2.6853 -0.0036 40 1 3.6190 4.1839 1.0125 41 1 4.4554 4.4851 -0.5296 42 1 2.7867 3.8659 -0.5284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672533176.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:39 Heat of formation + Delta-G solvation = -133.057064 kcal Electronic energy + Delta-G solvation = -27649.316445 eV Core-core repulsion = 23210.803777 eV Total energy + Delta-G solvation = -4438.512667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.30141 -40.63086 -39.91266 -38.24346 -37.08227 -35.32962 -34.58763 -34.42726 -33.69230 -31.57339 -31.33218 -29.03647 -28.34047 -27.42516 -26.27323 -24.38257 -22.70451 -21.96700 -20.88146 -20.29648 -19.62234 -18.73339 -18.55822 -18.02399 -17.43251 -17.31649 -16.64296 -16.11293 -15.77514 -15.68294 -15.27862 -14.69435 -14.53647 -14.48282 -14.25083 -13.98894 -13.82086 -13.73975 -13.52214 -13.48884 -13.38926 -13.14629 -12.92370 -12.60500 -12.22047 -12.19414 -11.91250 -11.63923 -11.31218 -11.13387 -11.10704 -10.46754 -10.35186 -10.28601 -10.11954 -9.64559 -9.36329 -9.14836 -8.70926 -8.64303 -8.10991 -6.52293 -3.94345 0.27695 1.60507 1.80134 2.37322 2.45727 2.85959 3.11045 3.21753 3.27014 3.28136 3.73673 3.92997 4.07813 4.20568 4.34568 4.37446 4.64148 4.73679 4.85238 4.87590 4.92325 4.98426 5.06540 5.16377 5.20077 5.25805 5.29788 5.54740 5.56337 5.76074 5.87583 5.93171 5.97729 6.05876 6.21801 6.38418 6.67782 6.93416 7.16377 7.45257 7.91331 8.10732 8.43981 8.66464 9.03783 9.38379 9.86194 10.64518 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019217 B = 0.001690 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.688325 B =16561.098816 C =17037.228400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.348 6.348 3 C 0.554 3.446 4 O -0.485 6.485 5 C -0.070 4.070 6 O -0.141 6.141 7 C 0.022 3.978 8 C 0.218 3.782 9 N -0.749 5.749 10 C 0.709 3.291 11 O -0.594 6.594 12 N -0.721 5.721 13 C 0.128 3.872 14 C 0.428 3.572 15 O -0.598 6.598 16 N -0.548 5.548 17 C -0.305 4.305 18 H 0.105 0.895 19 C 0.026 3.974 20 N -0.894 5.894 21 Si 0.933 3.067 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.269 1.269 25 C -0.197 4.197 26 C -0.068 4.068 27 C -0.100 4.100 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.401 0.599 34 H 0.408 0.592 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.396 0.604 38 H 0.274 0.726 39 H 0.166 0.834 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.553 12.173 -15.335 27.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.264 6.264 3 C 0.399 3.601 4 O -0.375 6.375 5 C -0.120 4.120 6 O -0.036 6.036 7 C -0.032 4.032 8 C 0.094 3.906 9 N -0.407 5.407 10 C 0.409 3.591 11 O -0.473 6.473 12 N -0.378 5.378 13 C 0.000 4.000 14 C 0.213 3.787 15 O -0.485 6.485 16 N -0.183 5.183 17 C -0.435 4.435 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.534 5.534 21 Si 0.760 3.240 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.193 1.193 25 C -0.217 4.217 26 C -0.070 4.070 27 C -0.156 4.156 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.125 0.875 31 H 0.109 0.891 32 H 0.124 0.876 33 H 0.235 0.765 34 H 0.245 0.755 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.184 0.816 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.594 11.930 -15.617 27.751 hybrid contribution -0.045 0.004 1.226 1.227 sum -19.639 11.935 -14.391 27.115 Atomic orbital electron populations 1.23384 0.75121 1.04325 1.02879 1.86685 1.24149 1.31636 1.83896 1.19143 0.85410 0.82207 0.73312 1.90924 1.64306 1.35732 1.46535 1.20474 0.87855 0.85833 1.17848 1.84137 1.15168 1.34301 1.70039 1.22850 0.83939 0.93947 1.02416 1.19515 0.88289 0.98629 0.84135 1.44999 1.30757 1.57259 1.07702 1.15724 0.80587 0.79212 0.83615 1.90928 1.55782 1.56863 1.43730 1.44757 1.31290 1.55740 1.06051 1.20812 0.87816 0.95864 0.95509 1.19753 0.84791 0.85239 0.88877 1.90496 1.46803 1.52083 1.59109 1.41783 1.24143 1.44115 1.08284 1.19726 1.11259 1.30490 0.81987 0.87684 1.25329 0.95552 0.96187 1.00663 1.69617 1.15455 1.32919 1.35422 0.85809 0.77440 0.78950 0.81799 1.20276 1.20797 1.19338 1.21639 0.97377 0.94217 1.08479 1.20695 0.92386 0.95905 0.98052 1.20516 1.02279 0.89361 1.03441 0.91426 0.91497 0.87539 0.89137 0.87583 0.76477 0.75459 0.89877 0.89855 0.76993 0.91582 0.81647 0.90148 0.90678 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.57 101.05 1.07 1.28 16 2 O -0.35 -3.35 10.58 -42.48 -0.45 -3.80 16 3 C 0.55 5.82 7.93 34.05 0.27 6.09 16 4 O -0.49 -5.47 14.53 -19.36 -0.28 -5.75 16 5 C -0.07 -0.72 7.18 -36.84 -0.26 -0.99 16 6 O -0.14 -1.51 10.67 4.72 0.05 -1.46 16 7 C 0.02 0.19 6.68 -35.40 -0.24 -0.04 16 8 C 0.22 2.02 6.20 -5.20 -0.03 1.99 16 9 N -0.75 -8.31 5.55 -66.42 -0.37 -8.68 16 10 C 0.71 10.76 8.57 -86.92 -0.74 10.02 16 11 O -0.59 -10.84 16.34 5.29 0.09 -10.75 16 12 N -0.72 -11.62 5.53 -66.42 -0.37 -11.99 16 13 C 0.13 2.31 6.15 -5.20 -0.03 2.28 16 14 C 0.43 9.65 7.85 -10.99 -0.09 9.56 16 15 O -0.60 -15.09 15.24 5.54 0.08 -15.00 16 16 N -0.55 -13.42 5.29 -10.96 -0.06 -13.48 16 17 C -0.31 -8.22 9.68 -14.93 -0.14 -8.36 16 18 H 0.11 2.95 7.16 -52.48 -0.38 2.57 16 19 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 20 N -0.89 -23.67 13.05 55.50 0.72 -22.94 16 21 Si 0.93 20.40 29.55 -169.99 -5.02 15.37 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 C -0.20 -1.56 10.72 -39.89 -0.43 -1.99 16 26 C -0.07 -0.61 6.20 -104.42 -0.65 -1.25 16 27 C -0.10 -0.70 9.81 36.01 0.35 -0.35 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.40 3.81 8.48 -40.82 -0.35 3.46 16 34 H 0.41 6.43 7.45 -40.82 -0.30 6.13 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 37 H 0.40 9.31 7.90 -40.82 -0.32 8.99 16 38 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.69 6.45 -51.93 -0.33 0.35 16 LS Contribution 377.78 15.07 5.69 5.69 Total: -1.00 -33.35 377.78 -5.98 -39.33 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -5.05 Total: 14.67 kcal Atomic # 6 Polarization: 19.81 SS G_CDS: -1.02 Total: 18.79 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: -0.07 Total: -57.10 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -0.51 Total: -36.76 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.35 -5.98 -39.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672533176.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.727 kcal (2) G-P(sol) polarization free energy of solvation -33.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds