Wall clock time and date at job start Tue Mar 31 2020 22:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34898 * 116.99474 * 2 1 4 4 O 1.21624 * 120.00122 * 359.71459 * 3 2 1 5 5 C 1.46476 * 119.99928 * 179.97438 * 3 2 1 6 6 O 1.34937 * 125.99062 * 359.40872 * 5 3 2 7 7 C 1.33919 * 109.37728 * 179.86427 * 6 5 3 8 8 C 1.50697 * 125.61193 * 180.15828 * 7 6 5 9 9 N 1.46498 * 109.47329 * 270.28811 * 8 7 6 10 10 C 1.34773 * 119.99700 * 179.97438 * 9 8 7 11 11 O 1.21586 * 120.00681 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99642 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99936 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.47452 * 180.02562 * 13 12 10 15 15 O 1.21296 * 119.99504 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00289 * 180.02562 * 14 13 12 17 17 C 1.37096 * 120.00000 * 179.97438 * 16 14 13 18 18 H 1.08006 * 120.00012 * 0.02562 * 17 16 14 19 19 C 1.38948 * 120.00128 * 179.97438 * 17 16 14 20 20 N 1.31418 * 119.99922 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00127 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47176 * 90.00546 * 21 19 17 23 23 H 1.48506 * 109.47093 * 210.00431 * 21 19 17 24 24 H 1.48504 * 109.47197 * 330.00149 * 21 19 17 25 25 C 1.35166 * 108.78005 * 0.40781 * 7 6 5 26 26 C 1.36635 * 125.99700 * 179.72126 * 5 3 2 27 27 C 1.50702 * 126.64815 * 359.95847 * 26 5 3 28 28 H 1.08996 * 109.47621 * 300.00233 * 1 2 3 29 29 H 1.09001 * 109.47124 * 60.00685 * 1 2 3 30 30 H 1.09002 * 109.46831 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46662 * 30.28694 * 8 7 6 32 32 H 1.08999 * 109.47087 * 150.28466 * 8 7 6 33 33 H 0.97001 * 120.00052 * 359.97438 * 9 8 7 34 34 H 0.97001 * 120.00110 * 0.02562 * 12 10 9 35 35 H 1.09001 * 109.46964 * 300.00274 * 13 12 10 36 36 H 1.09000 * 109.47190 * 60.00204 * 13 12 10 37 37 H 0.97001 * 119.99848 * 359.97438 * 16 14 13 38 38 H 0.96997 * 119.99642 * 179.97438 * 20 19 17 39 39 H 1.07999 * 126.43887 * 179.74068 * 25 7 6 40 40 H 1.09000 * 109.47202 * 89.99766 * 27 26 5 41 41 H 1.08998 * 109.46950 * 209.99918 * 27 26 5 42 42 H 1.09000 * 109.47215 * 329.99766 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2020 0.0000 4 8 1.4019 2.2220 -0.0052 5 6 3.5271 1.2788 0.0006 6 8 4.3762 0.2301 0.0124 7 6 5.6376 0.6797 0.0059 8 6 6.8755 -0.1797 0.0117 9 7 7.2752 -0.4510 1.3947 10 6 8.3631 -1.2057 1.6460 11 8 9.0131 -1.6612 0.7249 12 7 8.7312 -1.4549 2.9184 13 6 9.9141 -2.2748 3.1916 14 6 10.1050 -2.4007 4.6811 15 8 9.3296 -1.8583 5.4399 16 7 11.1380 -3.1150 5.1702 17 6 11.3120 -3.2290 6.5253 18 1 10.6210 -2.7467 7.2009 19 6 12.3767 -3.9658 7.0295 20 7 13.2171 -4.5531 6.2074 21 14 12.6133 -4.1217 8.8758 22 1 11.8777 -5.3131 9.3703 23 1 14.0594 -4.2720 9.1786 24 1 12.0911 -2.9040 9.5464 25 6 5.6179 2.0312 -0.0012 26 6 4.2711 2.4248 -0.0047 27 6 3.7468 3.8376 -0.0131 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 6.6669 -1.1207 -0.4974 32 1 7.6820 0.3414 -0.5041 33 1 6.7569 -0.0873 2.1296 34 1 8.2129 -1.0912 3.6533 35 1 9.7773 -3.2656 2.7582 36 1 10.7925 -1.8036 2.7509 37 1 11.7583 -3.5484 4.5634 38 1 13.9605 -5.0671 6.5594 39 1 6.4773 2.6853 -0.0036 40 1 3.6190 4.1839 1.0125 41 1 4.4554 4.4851 -0.5296 42 1 2.7867 3.8659 -0.5284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672533176.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:38 Heat of formation + Delta-G solvation = -158.049088 kcal Electronic energy + Delta-G solvation = -27650.400180 eV Core-core repulsion = 23210.803777 eV Total energy + Delta-G solvation = -4439.596403 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.01052 -41.37755 -41.17505 -40.00566 -37.80572 -36.42657 -36.09464 -35.26604 -35.26255 -33.35954 -32.32919 -29.76927 -29.36825 -28.29854 -27.27851 -26.11069 -23.44518 -22.65627 -22.06168 -21.35257 -21.02021 -20.11747 -19.65716 -19.41740 -18.18145 -18.06784 -17.66186 -17.41740 -16.97000 -16.89964 -16.45317 -16.26462 -15.89223 -15.82351 -15.31669 -15.10808 -14.97349 -14.56179 -14.39130 -14.28717 -14.05130 -13.93845 -13.90513 -13.63292 -13.52772 -13.42051 -13.12356 -12.89950 -12.83347 -12.43915 -12.11866 -11.94380 -11.82113 -11.55385 -11.54926 -10.82247 -10.53566 -10.48992 -10.08735 -9.89324 -9.87598 -8.49397 -5.99336 -0.46580 0.88226 1.13092 1.37711 1.43968 1.55916 1.62616 1.69139 1.89389 1.92061 2.09168 2.30231 3.06668 3.18050 3.22449 3.33562 3.57348 3.70267 4.18731 4.20176 4.23847 4.24766 4.29381 4.31700 4.47467 4.50355 4.55544 4.59383 4.67877 4.73827 4.95545 4.97934 5.12328 5.25392 5.31412 5.34334 5.40477 5.69419 5.85144 5.94520 6.43769 6.50199 6.95186 7.05560 7.42668 7.49941 7.97064 8.67379 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019217 B = 0.001690 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.688325 B =16561.098816 C =17037.228400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.552 3.448 4 O -0.501 6.501 5 C -0.093 4.093 6 O -0.158 6.158 7 C 0.018 3.982 8 C 0.220 3.780 9 N -0.734 5.734 10 C 0.712 3.288 11 O -0.624 6.624 12 N -0.723 5.723 13 C 0.142 3.858 14 C 0.433 3.567 15 O -0.625 6.625 16 N -0.559 5.559 17 C -0.337 4.337 18 H 0.086 0.914 19 C -0.011 4.011 20 N -0.915 5.915 21 Si 0.996 3.004 22 H -0.271 1.271 23 H -0.272 1.272 24 H -0.270 1.270 25 C -0.185 4.185 26 C -0.067 4.067 27 C -0.098 4.098 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.131 0.869 31 H 0.087 0.913 32 H 0.123 0.877 33 H 0.410 0.590 34 H 0.410 0.590 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.399 0.601 38 H 0.279 0.721 39 H 0.192 0.808 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.561 12.886 -15.562 28.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.398 3.602 4 O -0.392 6.392 5 C -0.143 4.143 6 O -0.054 6.054 7 C -0.034 4.034 8 C 0.097 3.903 9 N -0.391 5.391 10 C 0.412 3.588 11 O -0.505 6.505 12 N -0.381 5.381 13 C 0.013 3.987 14 C 0.220 3.780 15 O -0.513 6.513 16 N -0.195 5.195 17 C -0.466 4.466 18 H 0.104 0.896 19 C -0.211 4.211 20 N -0.555 5.555 21 Si 0.820 3.180 22 H -0.197 1.197 23 H -0.197 1.197 24 H -0.195 1.195 25 C -0.205 4.205 26 C -0.069 4.069 27 C -0.154 4.154 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.149 0.851 31 H 0.105 0.895 32 H 0.140 0.860 33 H 0.246 0.754 34 H 0.248 0.752 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.234 0.766 38 H 0.089 0.911 39 H 0.209 0.791 40 H 0.104 0.896 41 H 0.115 0.885 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.639 12.657 -15.867 28.243 hybrid contribution -0.140 -0.185 1.230 1.251 sum -19.779 12.472 -14.637 27.586 Atomic orbital electron populations 1.23688 0.73286 1.06154 1.03289 1.86672 1.26099 1.31348 1.83628 1.19259 0.85668 0.82276 0.73009 1.90902 1.64686 1.36094 1.47495 1.20684 0.88006 0.86376 1.19267 1.84107 1.15813 1.34858 1.70654 1.22840 0.83346 0.94318 1.02935 1.19622 0.88912 0.98878 0.82907 1.44896 1.29365 1.55846 1.09021 1.15738 0.81131 0.79297 0.82683 1.90912 1.57045 1.58196 1.44348 1.44683 1.30899 1.55810 1.06661 1.20610 0.89231 0.97031 0.91785 1.20463 0.83398 0.83441 0.90685 1.90474 1.47494 1.52750 1.60620 1.41829 1.24973 1.44962 1.07725 1.19725 1.11962 1.31894 0.83016 0.89615 1.26112 0.94833 0.95359 1.04846 1.69680 1.15723 1.33069 1.37050 0.84877 0.77758 0.78781 0.76621 1.19661 1.19683 1.19496 1.21933 0.97699 0.93950 1.06891 1.21038 0.92735 0.96319 0.96841 1.20567 1.02263 0.88699 1.03912 0.91186 0.90954 0.85061 0.89501 0.85959 0.75376 0.75213 0.88878 0.88611 0.76637 0.91104 0.79087 0.89595 0.88465 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.57 113.37 1.20 1.51 16 2 O -0.36 -6.95 10.58 -56.74 -0.60 -7.55 16 3 C 0.55 11.63 7.93 69.97 0.55 12.19 16 4 O -0.50 -11.33 14.53 19.43 0.28 -11.05 16 5 C -0.09 -1.90 7.18 24.04 0.17 -1.72 16 6 O -0.16 -3.28 10.67 -4.95 -0.05 -3.33 16 7 C 0.02 0.30 6.68 24.98 0.17 0.46 16 8 C 0.22 3.67 6.20 85.63 0.53 4.21 16 9 N -0.73 -15.01 5.55 -482.31 -2.68 -17.69 16 10 C 0.71 20.54 8.57 179.05 1.53 22.07 16 11 O -0.62 -21.86 16.34 -3.99 -0.07 -21.92 16 12 N -0.72 -22.45 5.53 -482.30 -2.67 -25.12 16 13 C 0.14 4.98 6.15 85.63 0.53 5.50 16 14 C 0.43 19.49 7.85 87.66 0.69 20.18 16 15 O -0.63 -31.66 15.24 -3.08 -0.05 -31.70 16 16 N -0.56 -27.59 5.29 -306.98 -1.62 -29.21 16 17 C -0.34 -18.33 9.68 84.04 0.81 -17.51 16 18 H 0.09 4.92 7.16 -2.91 -0.02 4.90 16 19 C -0.01 -0.56 5.50 84.92 0.47 -0.09 16 20 N -0.92 -48.11 13.05 21.66 0.28 -47.83 16 21 Si 1.00 41.41 29.55 68.60 2.03 43.44 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 C -0.19 -2.50 10.72 22.07 0.24 -2.27 16 26 C -0.07 -1.10 6.20 -19.73 -0.12 -1.22 16 27 C -0.10 -1.23 9.81 71.24 0.70 -0.53 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.12 1.71 8.14 -2.39 -0.02 1.70 16 33 H 0.41 7.07 8.48 -92.71 -0.79 6.28 16 34 H 0.41 12.53 7.45 -92.71 -0.69 11.84 16 35 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 37 H 0.40 18.89 7.90 -92.71 -0.73 18.16 16 38 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 39 H 0.19 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.07 1.14 6.45 -2.39 -0.02 1.12 16 Total: -1.00 -71.13 377.78 1.23 -69.90 By element: Atomic # 1 Polarization: 40.39 SS G_CDS: -1.09 Total: 39.30 kcal Atomic # 6 Polarization: 35.32 SS G_CDS: 7.47 Total: 42.78 kcal Atomic # 7 Polarization: -113.16 SS G_CDS: -6.69 Total: -119.85 kcal Atomic # 8 Polarization: -75.09 SS G_CDS: -0.48 Total: -75.57 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -71.13 1.23 -69.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672533176.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.150 kcal (2) G-P(sol) polarization free energy of solvation -71.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds