Wall clock time and date at job start Tue Mar 31 2020 22:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86803 * 119.99766 * 2 1 4 4 H 1.48503 * 109.47365 * 274.98311 * 3 2 1 5 5 H 1.48495 * 109.47389 * 34.99138 * 3 2 1 6 6 H 1.48505 * 109.46776 * 154.98831 * 3 2 1 7 7 C 1.40030 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99807 * 173.66828 * 7 2 1 9 9 C 1.41334 * 119.99553 * 353.66886 * 7 2 1 10 10 C 1.40606 * 119.78411 * 186.32383 * 9 7 2 11 11 C 1.38317 * 119.12877 * 180.02562 * 10 9 7 12 12 C 1.38686 * 118.66814 * 359.73311 * 11 10 9 13 13 C 1.39642 * 119.49746 * 0.55082 * 12 11 10 14 14 N 1.39243 * 119.57483 * 179.70800 * 13 12 11 15 15 C 1.34786 * 120.00119 * 341.17256 * 14 13 12 16 16 O 1.21575 * 119.99646 * 354.20253 * 15 14 13 17 17 N 1.34771 * 119.99888 * 174.20909 * 15 14 13 18 18 C 1.46507 * 119.99785 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47056 * 179.97438 * 18 17 15 20 20 N 1.32615 * 125.19069 * 90.01982 * 19 18 17 21 21 C 1.32821 * 109.75938 * 179.97438 * 20 19 18 22 22 N 1.33815 * 132.49946 * 180.02562 * 21 20 19 23 23 C 1.31352 * 120.86217 * 179.97438 * 22 21 20 24 24 C 1.40045 * 120.31415 * 0.02562 * 23 22 21 25 25 C 1.35782 * 119.23900 * 359.97438 * 24 23 22 26 26 N 1.35973 * 119.02113 * 359.97438 * 25 24 23 27 27 N 1.31181 * 125.18274 * 270.02219 * 19 18 17 28 28 N 1.31925 * 120.85009 * 359.43451 * 13 12 11 29 29 H 0.97002 * 120.00114 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.43738 * 359.97438 * 10 9 7 31 31 H 1.08000 * 120.66347 * 180.02562 * 11 10 9 32 32 H 1.08006 * 120.24697 * 180.28338 * 12 11 10 33 33 H 0.97004 * 120.00503 * 161.17380 * 14 13 12 34 34 H 0.96999 * 120.00304 * 359.97438 * 17 15 14 35 35 H 1.08993 * 109.47236 * 59.99456 * 18 17 15 36 36 H 1.09002 * 109.46268 * 299.99268 * 18 17 15 37 37 H 1.08005 * 119.84237 * 179.97438 * 23 22 21 38 38 H 1.07995 * 120.38312 * 179.97438 * 24 23 22 39 39 H 1.07998 * 120.48557 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3836 2.1074 -1.3948 5 1 1.4956 2.6200 0.8028 6 1 3.5877 1.4121 0.5920 7 6 2.0076 -1.2127 -0.0005 8 1 3.0826 -1.2154 -0.1037 9 6 1.3073 -2.4330 0.1339 10 6 2.0213 -3.6370 0.2668 11 6 1.3222 -4.8234 0.3969 12 6 -0.0640 -4.7822 0.3973 13 6 -0.7155 -3.5552 0.2558 14 7 -2.1073 -3.5128 0.2498 15 6 -2.8146 -4.6323 -0.0012 16 8 -2.2409 -5.6538 -0.3258 17 7 -4.1579 -4.6192 0.1075 18 6 -4.9267 -5.8363 -0.1648 19 6 -6.3950 -5.5564 0.0272 20 7 -7.2217 -5.1298 -0.9179 21 6 -8.4425 -4.9854 -0.4149 22 7 -9.6012 -4.5889 -0.9540 23 6 -10.6958 -4.5296 -0.2303 24 6 -10.6671 -4.8819 1.1248 25 6 -9.4958 -5.2855 1.6805 26 7 -8.3806 -5.3371 0.9043 27 7 -7.0502 -5.6976 1.1549 28 7 -0.0294 -2.4352 0.1329 29 1 -0.4850 0.8401 0.0004 30 1 3.1013 -3.6355 0.2664 31 1 1.8455 -5.7624 0.5010 32 1 -0.6353 -5.6928 0.5020 33 1 -2.5679 -2.6775 0.4263 34 1 -4.6156 -3.8043 0.3667 35 1 -4.6146 -6.6241 0.5207 36 1 -4.7487 -6.1562 -1.1915 37 1 -11.6221 -4.2067 -0.6822 38 1 -11.5662 -4.8332 1.7210 39 1 -9.4508 -5.5622 2.7235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674527516.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:00 Heat of formation + Delta-G solvation = 171.590106 kcal Electronic energy + Delta-G solvation = -26903.267467 eV Core-core repulsion = 22849.859714 eV Total energy + Delta-G solvation = -4053.407753 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.39828 -40.08609 -39.34251 -37.85389 -35.31747 -34.74546 -34.16181 -33.21937 -31.85888 -31.18336 -30.35428 -29.29167 -27.58617 -25.40705 -25.10358 -24.17586 -22.21367 -21.53188 -21.34644 -20.26074 -18.93101 -18.69248 -18.21531 -17.37561 -17.06206 -16.85247 -16.41360 -15.49373 -15.21224 -15.08026 -14.60902 -14.57319 -14.26357 -13.91838 -13.62167 -13.41632 -13.19709 -13.11457 -12.95777 -12.84629 -12.50196 -12.19064 -11.94099 -11.24432 -11.07378 -10.88171 -10.63773 -10.61762 -10.51982 -10.22643 -10.09110 -9.81041 -9.34337 -9.30566 -9.07880 -8.97426 -7.98422 -7.63218 -7.02352 -6.38186 -4.45714 -0.13548 0.16064 1.35189 1.86292 2.67948 2.73330 2.84614 2.98747 3.11208 3.12746 3.14761 3.28671 3.40975 3.69863 3.72020 3.98178 4.00242 4.25509 4.50408 4.56213 4.72776 4.82723 5.15448 5.30267 5.38743 5.57274 5.72886 5.77977 5.94809 6.18976 6.34505 6.47415 6.73622 6.86052 6.89332 6.95980 7.11123 7.23549 7.44882 7.54818 7.64983 7.94921 8.09027 8.20234 8.43774 8.74205 8.90280 9.05552 10.09662 10.35188 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016794 B = 0.002133 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.865163 B =13125.513372 C =14389.585900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.723 5.723 2 C 0.071 3.929 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.436 4.436 8 H 0.085 0.915 9 C 0.280 3.720 10 C -0.290 4.290 11 C -0.049 4.049 12 C -0.311 4.311 13 C 0.374 3.626 14 N -0.656 5.656 15 C 0.714 3.286 16 O -0.565 6.565 17 N -0.743 5.743 18 C 0.236 3.764 19 C 0.266 3.734 20 N -0.505 5.505 21 C 0.439 3.561 22 N -0.451 5.451 23 C 0.206 3.794 24 C -0.223 4.223 25 C 0.173 3.827 26 N -0.327 5.327 27 N -0.312 5.312 28 N -0.509 5.509 29 H 0.270 0.730 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.134 0.866 33 H 0.404 0.596 34 H 0.398 0.602 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.192 0.808 38 H 0.176 0.824 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.045 -6.452 4.834 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.345 5.345 2 C -0.153 4.153 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.468 4.468 8 H 0.103 0.897 9 C 0.154 3.846 10 C -0.313 4.313 11 C -0.074 4.074 12 C -0.336 4.336 13 C 0.139 3.861 14 N -0.303 5.303 15 C 0.414 3.586 16 O -0.442 6.442 17 N -0.402 5.402 18 C 0.109 3.891 19 C -0.016 4.016 20 N -0.237 5.237 21 C 0.079 3.921 22 N -0.165 5.165 23 C 0.020 3.980 24 C -0.248 4.248 25 C 0.035 3.965 26 N -0.107 5.107 27 N -0.144 5.144 28 N -0.227 5.227 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.151 0.849 33 H 0.239 0.761 34 H 0.231 0.769 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.209 0.791 38 H 0.193 0.807 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -24.334 -6.502 3.794 25.472 hybrid contribution -0.168 0.715 1.171 1.382 sum -24.502 -5.787 4.965 25.661 Atomic orbital electron populations 1.70126 1.07217 1.27425 1.29780 1.26038 0.94861 1.00984 0.93425 0.86336 0.80624 0.81000 0.78956 1.19580 1.20226 1.18509 1.19544 0.94613 0.89331 1.43339 0.89683 1.18171 0.86272 0.92077 0.88119 1.21703 0.98753 0.93743 1.17122 1.20807 0.93683 0.96550 0.96335 1.21617 0.94527 0.98077 1.19406 1.18191 0.81788 0.91398 0.94746 1.42204 1.05602 1.10612 1.71843 1.15560 0.80505 0.84110 0.78448 1.90857 1.68161 1.31965 1.53174 1.44860 1.05235 1.13648 1.76412 1.19296 0.77691 0.87737 1.04335 1.24492 0.97928 0.93547 0.85643 1.70820 0.96968 1.25893 1.30055 1.22820 0.93974 0.95686 0.79639 1.68046 0.95823 1.16775 1.35883 1.23644 0.95998 0.88023 0.90327 1.22006 0.98551 1.06368 0.97831 1.22218 0.82494 0.93249 0.98491 1.48875 1.08579 1.41788 1.11427 1.78655 0.84775 1.29236 1.21783 1.68002 1.08415 1.24652 1.21662 0.91922 0.88260 0.88332 0.84901 0.76098 0.76878 0.88231 0.87782 0.79119 0.80650 0.79851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.15 11.49 55.55 0.64 -18.51 16 2 C 0.07 1.83 5.49 -17.34 -0.10 1.73 16 3 Si 0.91 18.78 29.56 -169.99 -5.03 13.75 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.44 -11.84 9.13 -37.73 -0.34 -12.18 16 8 H 0.09 2.16 7.85 -52.49 -0.41 1.75 16 9 C 0.28 7.87 6.54 -85.00 -0.56 7.32 16 10 C -0.29 -7.45 9.83 -38.66 -0.38 -7.83 16 11 C -0.05 -1.19 10.15 -39.39 -0.40 -1.59 16 12 C -0.31 -7.80 8.83 -38.89 -0.34 -8.15 16 13 C 0.37 9.53 7.51 -155.00 -1.16 8.36 16 14 N -0.66 -13.75 5.42 -15.79 -0.09 -13.83 16 15 C 0.71 13.69 8.40 -86.91 -0.73 12.96 16 16 O -0.57 -12.48 13.14 5.30 0.07 -12.41 16 17 N -0.74 -10.90 5.55 -66.41 -0.37 -11.27 16 18 C 0.24 3.10 6.30 -5.19 -0.03 3.07 16 19 C 0.27 3.50 7.46 -157.01 -1.17 2.33 16 20 N -0.51 -7.29 11.25 -11.80 -0.13 -7.42 16 21 C 0.44 5.37 8.99 -323.14 -2.91 2.47 16 22 N -0.45 -4.41 10.48 -13.82 -0.14 -4.56 16 23 C 0.21 0.84 11.27 -17.08 -0.19 0.64 16 24 C -0.22 -0.46 10.07 -39.78 -0.40 -0.86 16 25 C 0.17 0.85 11.32 -16.60 -0.19 0.66 16 26 N -0.33 -3.33 3.91 -13.84 -0.05 -3.39 16 27 N -0.31 -3.87 12.78 32.39 0.41 -3.46 16 28 N -0.51 -14.18 7.92 -10.26 -0.08 -14.26 16 29 H 0.27 6.47 8.29 -40.82 -0.34 6.13 16 30 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 31 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 32 H 0.13 3.28 5.33 -52.50 -0.28 3.00 16 33 H 0.40 7.66 8.84 -40.82 -0.36 7.30 16 34 H 0.40 5.18 8.48 -40.82 -0.35 4.83 16 35 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.19 -0.07 8.06 -52.48 -0.42 -0.49 16 38 H 0.18 -0.40 8.06 -52.49 -0.42 -0.82 16 39 H 0.18 0.30 8.06 -52.49 -0.42 -0.12 16 LS Contribution 349.48 15.07 5.27 5.27 Total: -1.00 -37.63 349.48 -11.90 -49.54 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -3.49 Total: 11.62 kcal Atomic # 6 Polarization: 17.85 SS G_CDS: -8.90 Total: 8.94 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: 0.18 Total: -76.70 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.07 Total: -12.41 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.63 -11.90 -49.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674527516.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.125 kcal (2) G-P(sol) polarization free energy of solvation -37.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 183.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds