Wall clock time and date at job start Tue Mar 31 2020 22:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86803 * 119.99766 * 2 1 4 4 H 1.48503 * 109.47365 * 274.98311 * 3 2 1 5 5 H 1.48495 * 109.47389 * 34.99138 * 3 2 1 6 6 H 1.48505 * 109.46776 * 154.98831 * 3 2 1 7 7 C 1.40030 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99807 * 173.66828 * 7 2 1 9 9 C 1.41334 * 119.99553 * 353.66886 * 7 2 1 10 10 C 1.40606 * 119.78411 * 186.32383 * 9 7 2 11 11 C 1.38317 * 119.12877 * 180.02562 * 10 9 7 12 12 C 1.38686 * 118.66814 * 359.73311 * 11 10 9 13 13 C 1.39642 * 119.49746 * 0.55082 * 12 11 10 14 14 N 1.39243 * 119.57483 * 179.70800 * 13 12 11 15 15 C 1.34786 * 120.00119 * 341.17256 * 14 13 12 16 16 O 1.21575 * 119.99646 * 354.20253 * 15 14 13 17 17 N 1.34771 * 119.99888 * 174.20909 * 15 14 13 18 18 C 1.46507 * 119.99785 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47056 * 179.97438 * 18 17 15 20 20 N 1.32615 * 125.19069 * 90.01982 * 19 18 17 21 21 C 1.32821 * 109.75938 * 179.97438 * 20 19 18 22 22 N 1.33815 * 132.49946 * 180.02562 * 21 20 19 23 23 C 1.31352 * 120.86217 * 179.97438 * 22 21 20 24 24 C 1.40045 * 120.31415 * 0.02562 * 23 22 21 25 25 C 1.35782 * 119.23900 * 359.97438 * 24 23 22 26 26 N 1.35973 * 119.02113 * 359.97438 * 25 24 23 27 27 N 1.31181 * 125.18274 * 270.02219 * 19 18 17 28 28 N 1.31925 * 120.85009 * 359.43451 * 13 12 11 29 29 H 0.97002 * 120.00114 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.43738 * 359.97438 * 10 9 7 31 31 H 1.08000 * 120.66347 * 180.02562 * 11 10 9 32 32 H 1.08006 * 120.24697 * 180.28338 * 12 11 10 33 33 H 0.97004 * 120.00503 * 161.17380 * 14 13 12 34 34 H 0.96999 * 120.00304 * 359.97438 * 17 15 14 35 35 H 1.08993 * 109.47236 * 59.99456 * 18 17 15 36 36 H 1.09002 * 109.46268 * 299.99268 * 18 17 15 37 37 H 1.08005 * 119.84237 * 179.97438 * 23 22 21 38 38 H 1.07995 * 120.38312 * 179.97438 * 24 23 22 39 39 H 1.07998 * 120.48557 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3836 2.1074 -1.3948 5 1 1.4956 2.6200 0.8028 6 1 3.5877 1.4121 0.5920 7 6 2.0076 -1.2127 -0.0005 8 1 3.0826 -1.2154 -0.1037 9 6 1.3073 -2.4330 0.1339 10 6 2.0213 -3.6370 0.2668 11 6 1.3222 -4.8234 0.3969 12 6 -0.0640 -4.7822 0.3973 13 6 -0.7155 -3.5552 0.2558 14 7 -2.1073 -3.5128 0.2498 15 6 -2.8146 -4.6323 -0.0012 16 8 -2.2409 -5.6538 -0.3258 17 7 -4.1579 -4.6192 0.1075 18 6 -4.9267 -5.8363 -0.1648 19 6 -6.3950 -5.5564 0.0272 20 7 -7.2217 -5.1298 -0.9179 21 6 -8.4425 -4.9854 -0.4149 22 7 -9.6012 -4.5889 -0.9540 23 6 -10.6958 -4.5296 -0.2303 24 6 -10.6671 -4.8819 1.1248 25 6 -9.4958 -5.2855 1.6805 26 7 -8.3806 -5.3371 0.9043 27 7 -7.0502 -5.6976 1.1549 28 7 -0.0294 -2.4352 0.1329 29 1 -0.4850 0.8401 0.0004 30 1 3.1013 -3.6355 0.2664 31 1 1.8455 -5.7624 0.5010 32 1 -0.6353 -5.6928 0.5020 33 1 -2.5679 -2.6775 0.4263 34 1 -4.6156 -3.8043 0.3667 35 1 -4.6146 -6.6241 0.5207 36 1 -4.7487 -6.1562 -1.1915 37 1 -11.6221 -4.2067 -0.6822 38 1 -11.5662 -4.8332 1.7210 39 1 -9.4508 -5.5622 2.7235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674527516.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:59 Heat of formation + Delta-G solvation = 146.008162 kcal Electronic energy + Delta-G solvation = -26904.376784 eV Core-core repulsion = 22849.859714 eV Total energy + Delta-G solvation = -4054.517069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.10047 -41.67576 -40.06963 -39.63095 -36.48418 -35.91861 -35.54011 -35.07780 -32.63163 -32.30809 -31.90091 -31.05016 -28.74993 -27.31065 -25.66956 -24.85230 -23.79141 -23.47149 -22.31905 -21.92064 -19.97710 -19.54487 -19.19732 -19.13217 -18.34685 -17.81661 -17.09044 -16.99939 -16.72933 -16.30937 -16.18697 -15.99007 -15.48792 -15.29121 -14.68305 -14.64845 -14.44811 -14.21284 -13.87774 -13.85072 -13.78944 -13.77552 -13.19442 -12.93448 -12.89852 -12.65023 -12.56831 -11.85082 -11.61900 -11.47021 -11.12386 -11.04422 -10.94948 -10.77532 -10.37110 -9.99017 -9.96158 -9.62299 -8.94441 -8.30309 -6.48925 -0.56078 -0.43646 0.74526 0.81820 0.98551 1.13899 1.42796 1.53349 1.58611 1.68925 2.04349 2.13947 2.25001 2.34380 2.67177 2.89248 3.10084 3.29135 3.49416 3.90949 3.93606 4.12960 4.26538 4.35499 4.39448 4.51599 4.63268 4.73536 4.87573 4.90996 4.92798 4.94680 5.00278 5.19009 5.24659 5.32466 5.54208 5.68642 5.79485 5.98416 6.19127 6.29056 6.32224 6.70282 6.72227 6.83866 6.99103 7.38552 8.11496 8.45974 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016794 B = 0.002133 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.865163 B =13125.513372 C =14389.585900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.025 3.975 3 Si 0.989 3.011 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.466 4.466 8 H 0.092 0.908 9 C 0.245 3.755 10 C -0.307 4.307 11 C -0.047 4.047 12 C -0.324 4.324 13 C 0.364 3.636 14 N -0.654 5.654 15 C 0.717 3.283 16 O -0.594 6.594 17 N -0.722 5.722 18 C 0.241 3.759 19 C 0.257 3.743 20 N -0.554 5.554 21 C 0.421 3.579 22 N -0.496 5.496 23 C 0.215 3.785 24 C -0.183 4.183 25 C 0.145 3.855 26 N -0.330 5.330 27 N -0.330 5.330 28 N -0.535 5.535 29 H 0.278 0.722 30 H 0.115 0.885 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.411 0.589 34 H 0.407 0.593 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.239 0.761 38 H 0.234 0.766 39 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.800 -5.664 6.035 29.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.179 1.179 7 C -0.498 4.498 8 H 0.111 0.889 9 C 0.118 3.882 10 C -0.330 4.330 11 C -0.072 4.072 12 C -0.349 4.349 13 C 0.128 3.872 14 N -0.301 5.301 15 C 0.417 3.583 16 O -0.473 6.473 17 N -0.380 5.380 18 C 0.114 3.886 19 C -0.025 4.025 20 N -0.288 5.288 21 C 0.061 3.939 22 N -0.212 5.212 23 C 0.033 3.967 24 C -0.207 4.207 25 C 0.010 3.990 26 N -0.109 5.109 27 N -0.164 5.164 28 N -0.255 5.255 29 H 0.089 0.911 30 H 0.133 0.867 31 H 0.150 0.850 32 H 0.154 0.846 33 H 0.248 0.752 34 H 0.242 0.758 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.255 0.745 38 H 0.250 0.750 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -27.207 -5.726 5.029 28.255 hybrid contribution 0.299 0.426 0.845 0.993 sum -26.908 -5.300 5.874 28.047 Atomic orbital electron populations 1.70208 1.08856 1.28986 1.29694 1.26989 0.95777 1.04495 0.92416 0.85100 0.79149 0.75685 0.79162 1.18966 1.19263 1.17852 1.19933 0.95240 0.90207 1.44403 0.88946 1.18708 0.86992 0.93507 0.88944 1.21891 0.99603 0.93637 1.17868 1.21181 0.93564 0.97576 0.94830 1.21834 0.95192 0.98109 1.19732 1.18519 0.83417 0.91231 0.94058 1.42110 1.04342 1.11612 1.72057 1.15587 0.81545 0.83130 0.78066 1.90818 1.69178 1.32747 1.54508 1.44667 1.03642 1.14796 1.74846 1.19279 0.78184 0.86874 1.04223 1.24156 0.97536 0.94785 0.86051 1.70648 0.98591 1.27946 1.31594 1.22918 0.94206 0.96250 0.80506 1.68147 0.96376 1.19139 1.37561 1.24681 0.95726 0.85053 0.91264 1.22722 0.99104 1.01767 0.97100 1.23192 0.81764 0.94117 0.99951 1.48922 1.08736 1.41699 1.11585 1.78466 0.86260 1.30029 1.21628 1.68022 1.08763 1.25700 1.22989 0.91117 0.86740 0.84974 0.84551 0.75226 0.75753 0.87532 0.88270 0.74482 0.75003 0.76767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -40.63 11.49 21.84 0.25 -40.38 16 2 C 0.02 1.28 5.49 85.29 0.47 1.75 16 3 Si 0.99 38.43 29.56 68.60 2.03 40.46 16 4 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 5 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 6 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 7 C -0.47 -25.78 9.13 23.47 0.21 -25.56 16 8 H 0.09 4.76 7.85 -2.91 -0.02 4.74 16 9 C 0.24 14.14 6.54 40.20 0.26 14.40 16 10 C -0.31 -16.00 9.83 22.87 0.22 -15.77 16 11 C -0.05 -2.29 10.15 22.40 0.23 -2.06 16 12 C -0.32 -16.52 8.83 22.72 0.20 -16.32 16 13 C 0.36 19.08 7.51 133.25 1.00 20.08 16 14 N -0.65 -28.29 5.42 -322.14 -1.75 -30.04 16 15 C 0.72 28.30 8.40 179.05 1.50 29.81 16 16 O -0.59 -26.92 13.14 -3.95 -0.05 -26.97 16 17 N -0.72 -21.94 5.55 -482.30 -2.68 -24.61 16 18 C 0.24 6.64 6.30 85.63 0.54 7.18 16 19 C 0.26 7.10 7.46 138.68 1.03 8.13 16 20 N -0.55 -16.80 11.25 -191.25 -2.15 -18.95 16 21 C 0.42 10.39 8.99 261.60 2.35 12.74 16 22 N -0.50 -9.16 10.48 -197.63 -2.07 -11.23 16 23 C 0.22 0.94 11.27 85.20 0.96 1.90 16 24 C -0.18 0.14 10.07 22.14 0.22 0.36 16 25 C 0.14 0.99 11.32 83.48 0.94 1.93 16 26 N -0.33 -6.50 3.91 -197.71 -0.77 -7.28 16 27 N -0.33 -8.34 12.78 -51.45 -0.66 -9.00 16 28 N -0.53 -30.78 7.92 -186.38 -1.48 -32.26 16 29 H 0.28 13.45 8.29 -92.71 -0.77 12.68 16 30 H 0.11 5.42 8.06 -2.91 -0.02 5.39 16 31 H 0.13 5.38 8.06 -2.91 -0.02 5.35 16 32 H 0.14 6.85 5.33 -3.14 -0.02 6.83 16 33 H 0.41 16.17 8.84 -92.71 -0.82 15.35 16 34 H 0.41 10.99 8.48 -92.71 -0.79 10.20 16 35 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.24 -1.44 8.06 -2.91 -0.02 -1.46 16 38 H 0.23 -2.80 8.06 -2.91 -0.02 -2.82 16 39 H 0.22 -0.07 8.06 -2.91 -0.02 -0.09 16 Total: -1.00 -87.69 349.48 0.38 -87.30 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: -0.45 Total: 34.38 kcal Atomic # 6 Polarization: 28.42 SS G_CDS: 10.16 Total: 38.57 kcal Atomic # 7 Polarization: -162.44 SS G_CDS: -11.30 Total: -173.74 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.05 Total: -26.97 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Total: -87.69 0.38 -87.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674527516.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.312 kcal (2) G-P(sol) polarization free energy of solvation -87.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds