Wall clock time and date at job start Tue Mar 31 2020 22:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00507 * 2 1 4 4 H 1.48502 * 109.47323 * 274.35143 * 3 2 1 5 5 H 1.48497 * 109.47157 * 34.35364 * 3 2 1 6 6 H 1.48496 * 109.47300 * 154.35181 * 3 2 1 7 7 C 1.38823 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99818 * 162.59686 * 7 2 1 9 9 N 1.36929 * 119.99710 * 342.59309 * 7 2 1 10 10 C 1.46932 * 120.62923 * 152.28799 * 9 7 2 11 11 C 1.53193 * 108.89365 * 126.33970 * 10 9 7 12 12 C 1.53349 * 109.14947 * 54.58000 * 11 10 9 13 13 N 1.46500 * 109.42211 * 178.67019 * 12 11 10 14 14 C 1.34771 * 120.00217 * 275.13086 * 13 12 11 15 15 O 1.21580 * 119.99940 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99801 * 179.97438 * 14 13 12 17 17 C 1.38898 * 119.99707 * 179.97438 * 16 14 13 18 18 N 1.29516 * 125.26516 * 179.72266 * 17 16 14 19 19 C 1.33678 * 115.65607 * 179.85738 * 18 17 16 20 20 C 1.47185 * 122.49904 * 180.22749 * 19 18 17 21 21 N 1.34777 * 120.00644 * 0.22046 * 20 19 18 22 22 O 1.21655 * 119.99675 * 180.22197 * 20 19 18 23 23 C 1.34867 * 114.99301 * 0.42903 * 19 18 17 24 24 S 1.70979 * 109.20479 * 359.77558 * 23 19 18 25 25 C 1.53038 * 109.60966 * 298.71388 * 12 11 10 26 26 C 1.46927 * 120.63500 * 332.30825 * 9 7 2 27 27 H 0.97000 * 119.99465 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.58789 * 246.20114 * 10 9 7 29 29 H 1.09000 * 109.58152 * 6.48462 * 10 9 7 30 30 H 1.08996 * 109.49449 * 174.66041 * 11 10 9 31 31 H 1.08996 * 109.49932 * 294.75815 * 11 10 9 32 32 H 1.09005 * 109.42157 * 58.74728 * 12 11 10 33 33 H 0.97001 * 119.99658 * 95.12721 * 13 12 11 34 34 H 0.96992 * 120.00284 * 0.02562 * 16 14 13 35 35 H 0.97000 * 119.99303 * 0.02562 * 21 20 19 36 36 H 0.97001 * 120.00218 * 179.97438 * 21 20 19 37 37 H 1.07997 * 125.39410 * 179.78656 * 23 19 18 38 38 H 1.09002 * 109.49898 * 301.42152 * 25 12 11 39 39 H 1.09001 * 109.50239 * 181.32239 * 25 12 11 40 40 H 1.08997 * 109.58712 * 353.38030 * 26 9 7 41 41 H 1.09003 * 109.58223 * 113.65521 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4059 2.0994 -1.3960 5 1 1.4969 2.6243 0.7900 6 1 3.5908 1.4151 0.6060 7 6 2.0102 -1.2023 -0.0005 8 1 3.0531 -1.2236 -0.2803 9 7 1.3724 -2.3611 0.3537 10 6 1.8185 -3.6547 -0.1814 11 6 2.0771 -4.6120 0.9864 12 6 0.8196 -4.6900 1.8607 13 7 1.0495 -5.6285 2.9619 14 6 0.8486 -6.9481 2.7757 15 8 0.4763 -7.3596 1.6940 16 7 1.0606 -7.8115 3.7887 17 6 0.8530 -9.1714 3.5969 18 7 1.0294 -10.0886 4.4942 19 6 0.7689 -11.3397 4.1020 20 6 0.9138 -12.4965 5.0004 21 7 1.3188 -12.3150 6.2730 22 8 0.6680 -13.6166 4.5942 23 6 0.3674 -11.4632 2.8204 24 16 0.3171 -9.9156 2.0951 25 6 0.5025 -3.3049 2.4290 26 6 0.2288 -2.3345 1.2757 27 1 -0.4849 0.8401 0.0004 28 1 1.0455 -4.0685 -0.8288 29 1 2.7374 -3.5171 -0.7513 30 1 2.3168 -5.6021 0.5989 31 1 2.9115 -4.2421 1.5822 32 1 -0.0201 -5.0361 1.2579 33 1 1.3462 -5.3001 3.8250 34 1 1.3572 -7.4831 4.6517 35 1 1.5144 -11.4218 6.5969 36 1 1.4140 -13.0774 6.8651 37 1 0.1172 -12.3923 2.3300 38 1 1.3517 -2.9474 3.0114 39 1 -0.3777 -3.3669 3.0689 40 1 0.1000 -1.3262 1.6692 41 1 -0.6744 -2.6382 0.7463 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675171705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:29 Heat of formation + Delta-G solvation = 3.392034 kcal Electronic energy + Delta-G solvation = -26224.858263 eV Core-core repulsion = 22267.308095 eV Total energy + Delta-G solvation = -3957.550168 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.94620 -40.32960 -38.62891 -37.68763 -35.11061 -34.74873 -33.88827 -32.27679 -30.49423 -30.03343 -29.30473 -26.00964 -25.15328 -23.34040 -22.37564 -22.00641 -21.44122 -20.31003 -19.70805 -18.92867 -17.95428 -17.70991 -17.39309 -16.72915 -16.19434 -16.03618 -15.60011 -15.26273 -14.94140 -14.62269 -14.45723 -14.08221 -13.84549 -13.64509 -13.44906 -13.10850 -12.83813 -12.50116 -12.20014 -11.58555 -11.34898 -11.22125 -11.01186 -10.77899 -10.68618 -10.61123 -10.42665 -10.34232 -10.21715 -10.15174 -10.01178 -9.88280 -9.68257 -9.62698 -9.10452 -8.55333 -8.44053 -6.77768 -5.87281 -3.28872 0.37531 0.77616 1.54676 1.60196 1.97618 2.78060 3.17420 3.30792 3.32359 3.40137 3.41897 3.74216 4.18548 4.43261 4.95061 5.06513 5.17028 5.28038 5.34298 5.36767 5.44022 5.69612 5.81757 5.92468 6.03107 6.08403 6.17712 6.40052 6.41582 6.44048 6.46652 6.67536 6.72682 6.88220 6.92908 7.20484 7.23004 7.49905 7.57396 7.72966 7.93675 8.06792 8.36507 9.12870 9.75994 10.32132 11.21805 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.040880 B = 0.001978 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.770248 B =14153.683495 C =14409.378202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.147 3.853 11 C -0.141 4.141 12 C 0.165 3.835 13 N -0.719 5.719 14 C 0.701 3.299 15 O -0.556 6.556 16 N -0.636 5.636 17 C 0.280 3.720 18 N -0.495 5.495 19 C 0.018 3.982 20 C 0.602 3.398 21 N -0.839 5.839 22 O -0.542 6.542 23 C -0.272 4.272 24 S 0.302 5.698 25 C -0.147 4.147 26 C 0.174 3.826 27 H 0.254 0.746 28 H 0.022 0.978 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.398 0.602 34 H 0.420 0.580 35 H 0.410 0.590 36 H 0.403 0.597 37 H 0.187 0.813 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.093 0.907 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.670 -18.189 12.162 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.020 3.980 11 C -0.181 4.181 12 C 0.063 3.937 13 N -0.371 5.371 14 C 0.400 3.600 15 O -0.433 6.433 16 N -0.289 5.289 17 C -0.091 4.091 18 N -0.219 5.219 19 C -0.117 4.117 20 C 0.385 3.615 21 N -0.402 5.402 22 O -0.419 6.419 23 C -0.416 4.416 24 S 0.554 5.446 25 C -0.187 4.187 26 C 0.047 3.953 27 H 0.065 0.935 28 H 0.040 0.960 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.233 0.767 34 H 0.258 0.742 35 H 0.240 0.760 36 H 0.234 0.766 37 H 0.205 0.795 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 0.955 -18.355 10.239 21.040 hybrid contribution 1.006 0.599 2.079 2.386 sum 1.961 -17.756 12.318 21.699 Atomic orbital electron populations 1.70022 1.05259 1.25608 1.53790 1.25050 0.95296 0.98484 1.00832 0.86290 0.79189 0.83648 0.77694 1.21412 1.21550 1.20443 1.19176 0.92774 0.84757 1.41574 0.91592 1.44105 1.35834 1.01548 1.50016 1.20873 0.98076 0.86486 0.92566 1.22478 0.96942 0.99810 0.98898 1.21213 0.98880 0.87571 0.86075 1.45572 1.70858 1.03700 1.17000 1.15912 0.79064 0.81918 0.83101 1.90878 1.52622 1.76034 1.23753 1.41829 1.69230 1.01613 1.16275 1.23953 1.01575 0.88363 0.95210 1.66967 1.23636 0.98705 1.32605 1.19606 1.08033 0.90296 0.93756 1.17148 0.75954 0.86716 0.81715 1.43621 1.70344 1.13721 1.12493 1.90860 1.51140 1.23943 1.75926 1.27027 1.07430 1.07784 0.99346 1.85332 1.59229 0.91005 1.09043 1.22575 1.00736 0.94237 1.01120 1.20763 0.88987 0.98059 0.87493 0.93549 0.96017 0.92431 0.92468 0.92190 0.89430 0.76750 0.74195 0.76004 0.76570 0.79541 0.91970 0.92508 0.88843 0.95911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.08 11.19 55.49 0.62 -24.45 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 20.81 29.59 -169.99 -5.03 15.78 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.25 -6.61 9.58 -15.06 -0.14 -6.75 16 8 H 0.07 1.70 7.89 -52.49 -0.41 1.28 16 9 N -0.59 -13.88 3.00 -172.31 -0.52 -14.40 16 10 C 0.15 2.92 6.50 -3.71 -0.02 2.90 16 11 C -0.14 -2.28 5.68 -26.45 -0.15 -2.43 16 12 C 0.17 2.46 2.42 -67.73 -0.16 2.30 16 13 N -0.72 -8.02 5.08 -58.48 -0.30 -8.32 16 14 C 0.70 8.39 8.49 -86.93 -0.74 7.65 16 15 O -0.56 -8.37 13.51 5.29 0.07 -8.30 16 16 N -0.64 -5.96 5.40 -16.31 -0.09 -6.05 16 17 C 0.28 3.04 8.36 -87.54 -0.73 2.31 16 18 N -0.49 -5.24 10.12 -10.51 -0.11 -5.35 16 19 C 0.02 0.20 6.66 -84.63 -0.56 -0.36 16 20 C 0.60 6.71 8.06 -12.63 -0.10 6.60 16 21 N -0.84 -6.05 8.87 30.38 0.27 -5.78 16 22 O -0.54 -7.65 17.49 5.23 0.09 -7.56 16 23 C -0.27 -2.88 10.55 29.54 0.31 -2.57 16 24 S 0.30 3.29 20.28 -107.50 -2.18 1.11 16 25 C -0.15 -2.36 5.55 -26.61 -0.15 -2.51 16 26 C 0.17 3.77 5.31 -3.71 -0.02 3.75 16 27 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.48 7.58 -51.93 -0.39 1.08 16 33 H 0.40 3.24 8.62 -40.82 -0.35 2.89 16 34 H 0.42 2.63 8.83 -40.82 -0.36 2.27 16 35 H 0.41 2.38 8.31 -40.82 -0.34 2.05 16 36 H 0.40 2.12 8.93 -40.82 -0.36 1.76 16 37 H 0.19 1.75 7.99 -52.49 -0.42 1.33 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.09 2.29 6.04 -51.93 -0.31 1.98 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 357.19 15.07 5.38 5.38 Total: -1.00 -32.23 357.19 -9.38 -41.61 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.04 Total: 5.46 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: -2.56 Total: 10.87 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: -0.12 Total: -64.35 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.16 Total: -15.86 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -2.18 Total: 1.11 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.23 -9.38 -41.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675171705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.003 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds