Wall clock time and date at job start Tue Mar 31 2020 22:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00507 * 2 1 4 4 H 1.48502 * 109.47323 * 274.35143 * 3 2 1 5 5 H 1.48497 * 109.47157 * 34.35364 * 3 2 1 6 6 H 1.48496 * 109.47300 * 154.35181 * 3 2 1 7 7 C 1.38823 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99818 * 162.59686 * 7 2 1 9 9 N 1.36929 * 119.99710 * 342.59309 * 7 2 1 10 10 C 1.46932 * 120.62923 * 152.28799 * 9 7 2 11 11 C 1.53193 * 108.89365 * 126.33970 * 10 9 7 12 12 C 1.53349 * 109.14947 * 54.58000 * 11 10 9 13 13 N 1.46500 * 109.42211 * 178.67019 * 12 11 10 14 14 C 1.34771 * 120.00217 * 275.13086 * 13 12 11 15 15 O 1.21580 * 119.99940 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99801 * 179.97438 * 14 13 12 17 17 C 1.38898 * 119.99707 * 179.97438 * 16 14 13 18 18 N 1.29516 * 125.26516 * 179.72266 * 17 16 14 19 19 C 1.33678 * 115.65607 * 179.85738 * 18 17 16 20 20 C 1.47185 * 122.49904 * 180.22749 * 19 18 17 21 21 N 1.34777 * 120.00644 * 0.22046 * 20 19 18 22 22 O 1.21655 * 119.99675 * 180.22197 * 20 19 18 23 23 C 1.34867 * 114.99301 * 0.42903 * 19 18 17 24 24 S 1.70979 * 109.20479 * 359.77558 * 23 19 18 25 25 C 1.53038 * 109.60966 * 298.71388 * 12 11 10 26 26 C 1.46927 * 120.63500 * 332.30825 * 9 7 2 27 27 H 0.97000 * 119.99465 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.58789 * 246.20114 * 10 9 7 29 29 H 1.09000 * 109.58152 * 6.48462 * 10 9 7 30 30 H 1.08996 * 109.49449 * 174.66041 * 11 10 9 31 31 H 1.08996 * 109.49932 * 294.75815 * 11 10 9 32 32 H 1.09005 * 109.42157 * 58.74728 * 12 11 10 33 33 H 0.97001 * 119.99658 * 95.12721 * 13 12 11 34 34 H 0.96992 * 120.00284 * 0.02562 * 16 14 13 35 35 H 0.97000 * 119.99303 * 0.02562 * 21 20 19 36 36 H 0.97001 * 120.00218 * 179.97438 * 21 20 19 37 37 H 1.07997 * 125.39410 * 179.78656 * 23 19 18 38 38 H 1.09002 * 109.49898 * 301.42152 * 25 12 11 39 39 H 1.09001 * 109.50239 * 181.32239 * 25 12 11 40 40 H 1.08997 * 109.58712 * 353.38030 * 26 9 7 41 41 H 1.09003 * 109.58223 * 113.65521 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4059 2.0994 -1.3960 5 1 1.4969 2.6243 0.7900 6 1 3.5908 1.4151 0.6060 7 6 2.0102 -1.2023 -0.0005 8 1 3.0531 -1.2236 -0.2803 9 7 1.3724 -2.3611 0.3537 10 6 1.8185 -3.6547 -0.1814 11 6 2.0771 -4.6120 0.9864 12 6 0.8196 -4.6900 1.8607 13 7 1.0495 -5.6285 2.9619 14 6 0.8486 -6.9481 2.7757 15 8 0.4763 -7.3596 1.6940 16 7 1.0606 -7.8115 3.7887 17 6 0.8530 -9.1714 3.5969 18 7 1.0294 -10.0886 4.4942 19 6 0.7689 -11.3397 4.1020 20 6 0.9138 -12.4965 5.0004 21 7 1.3188 -12.3150 6.2730 22 8 0.6680 -13.6166 4.5942 23 6 0.3674 -11.4632 2.8204 24 16 0.3171 -9.9156 2.0951 25 6 0.5025 -3.3049 2.4290 26 6 0.2288 -2.3345 1.2757 27 1 -0.4849 0.8401 0.0004 28 1 1.0455 -4.0685 -0.8288 29 1 2.7374 -3.5171 -0.7513 30 1 2.3168 -5.6021 0.5989 31 1 2.9115 -4.2421 1.5822 32 1 -0.0201 -5.0361 1.2579 33 1 1.3462 -5.3001 3.8250 34 1 1.3572 -7.4831 4.6517 35 1 1.5144 -11.4218 6.5969 36 1 1.4140 -13.0774 6.8651 37 1 0.1172 -12.3923 2.3300 38 1 1.3517 -2.9474 3.0114 39 1 -0.3777 -3.3669 3.0689 40 1 0.1000 -1.3262 1.6692 41 1 -0.6744 -2.6382 0.7463 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675171705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:28 Heat of formation + Delta-G solvation = -22.038387 kcal Electronic energy + Delta-G solvation = -26225.961009 eV Core-core repulsion = 22267.308095 eV Total energy + Delta-G solvation = -3958.652914 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.87694 -41.22432 -39.58855 -39.04114 -36.23947 -35.95917 -34.64477 -33.93191 -31.88071 -31.36267 -30.59972 -27.15678 -26.56770 -24.54387 -23.85127 -23.18711 -22.50802 -21.29283 -20.95371 -19.98833 -18.97341 -18.63037 -18.44970 -18.08576 -17.10661 -16.95306 -16.82647 -16.50359 -16.15935 -15.91475 -15.40009 -15.30743 -15.26692 -14.95607 -14.73150 -14.30555 -14.26390 -14.06384 -13.21205 -13.08106 -12.98997 -12.59969 -12.49259 -12.27938 -12.16966 -11.99980 -11.84067 -11.66112 -11.53167 -11.34895 -11.26192 -11.06189 -10.75107 -10.53865 -10.46897 -10.21174 -9.30600 -8.68495 -7.86338 -5.30286 -0.46966 -0.04543 0.70180 0.74182 1.05598 1.49210 1.51442 1.60726 1.85051 2.31615 2.53684 2.54795 2.85340 3.30287 3.43122 3.70037 3.90076 4.05610 4.17647 4.26673 4.35740 4.49891 4.55972 4.68877 4.77605 4.86498 4.95672 5.02052 5.09620 5.18998 5.33978 5.37474 5.50143 5.52950 5.67810 5.76219 5.80516 6.15481 6.41300 6.45724 6.73623 7.15398 7.17237 7.22477 7.87532 8.38716 9.20635 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.040880 B = 0.001978 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.770248 B =14153.683495 C =14409.378202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.965 3.035 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.143 3.857 11 C -0.126 4.126 12 C 0.180 3.820 13 N -0.704 5.704 14 C 0.704 3.296 15 O -0.587 6.587 16 N -0.618 5.618 17 C 0.270 3.730 18 N -0.484 5.484 19 C 0.004 3.996 20 C 0.599 3.401 21 N -0.817 5.817 22 O -0.578 6.578 23 C -0.268 4.268 24 S 0.294 5.706 25 C -0.129 4.129 26 C 0.176 3.824 27 H 0.250 0.750 28 H 0.010 0.990 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.418 0.582 34 H 0.437 0.563 35 H 0.419 0.581 36 H 0.415 0.585 37 H 0.195 0.805 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.062 0.938 41 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.885 -18.848 14.144 23.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.793 3.207 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.390 4.390 8 H 0.085 0.915 9 N -0.333 5.333 10 C 0.017 3.983 11 C -0.166 4.166 12 C 0.075 3.925 13 N -0.358 5.358 14 C 0.403 3.597 15 O -0.465 6.465 16 N -0.273 5.273 17 C -0.101 4.101 18 N -0.208 5.208 19 C -0.131 4.131 20 C 0.381 3.619 21 N -0.380 5.380 22 O -0.459 6.459 23 C -0.412 4.412 24 S 0.547 5.453 25 C -0.168 4.168 26 C 0.050 3.950 27 H 0.059 0.941 28 H 0.028 0.972 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.255 0.745 34 H 0.278 0.722 35 H 0.251 0.749 36 H 0.248 0.752 37 H 0.212 0.788 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges 2.215 -19.029 12.322 22.778 hybrid contribution 0.624 0.735 1.437 1.731 sum 2.839 -18.294 13.759 23.066 Atomic orbital electron populations 1.70174 1.06584 1.25858 1.55425 1.25763 0.96007 1.01397 1.01376 0.85302 0.78312 0.79825 0.77224 1.21731 1.21851 1.19325 1.19492 0.92996 0.85927 1.40614 0.91548 1.44367 1.36000 1.02057 1.50872 1.20977 0.97416 0.85858 0.94055 1.22266 0.97720 0.98961 0.97636 1.20739 0.97563 0.87534 0.86614 1.45057 1.70818 1.03013 1.16914 1.15875 0.78712 0.82085 0.83028 1.90877 1.53786 1.76615 1.25264 1.41493 1.68598 1.00742 1.16453 1.24053 1.02009 0.88834 0.95199 1.66949 1.23238 0.98378 1.32259 1.19767 1.08620 0.90606 0.94132 1.17208 0.75956 0.86101 0.82624 1.43472 1.68426 1.14805 1.11328 1.90844 1.53147 1.25087 1.76778 1.27147 1.06733 1.08000 0.99284 1.85425 1.59252 0.91224 1.09437 1.22267 1.02270 0.93319 0.98960 1.20591 0.87751 0.97914 0.88741 0.94075 0.97176 0.92612 0.91579 0.91414 0.91287 0.74474 0.72182 0.74898 0.75246 0.78785 0.90892 0.90111 0.91938 0.98500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.22 11.19 21.65 0.24 -52.98 16 2 C -0.05 -2.68 4.91 84.87 0.42 -2.27 16 3 Si 0.97 43.10 29.59 68.60 2.03 45.13 16 4 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.26 -13.64 9.58 84.04 0.81 -12.83 16 8 H 0.07 3.40 7.89 -2.91 -0.02 3.38 16 9 N -0.61 -28.76 3.00 -699.08 -2.09 -30.85 16 10 C 0.14 5.66 6.50 86.36 0.56 6.22 16 11 C -0.13 -3.84 5.68 30.78 0.17 -3.66 16 12 C 0.18 5.01 2.42 45.12 0.11 5.12 16 13 N -0.70 -13.55 5.08 -457.20 -2.32 -15.87 16 14 C 0.70 15.05 8.49 179.06 1.52 16.57 16 15 O -0.59 -16.69 13.51 -3.97 -0.05 -16.74 16 16 N -0.62 -9.82 5.40 -323.77 -1.75 -11.57 16 17 C 0.27 5.30 8.36 179.27 1.50 6.80 16 18 N -0.48 -9.19 10.12 -187.17 -1.89 -11.09 16 19 C 0.00 0.08 6.66 40.44 0.27 0.34 16 20 C 0.60 12.53 8.06 86.59 0.70 13.23 16 21 N -0.82 -10.13 8.87 -176.03 -1.56 -11.69 16 22 O -0.58 -15.95 17.49 -4.20 -0.07 -16.03 16 23 C -0.27 -5.40 10.55 67.05 0.71 -4.69 16 24 S 0.29 6.07 20.28 -56.49 -1.15 4.93 16 25 C -0.13 -3.90 5.55 30.67 0.17 -3.73 16 26 C 0.18 7.76 5.31 86.36 0.46 8.21 16 27 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 28 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 2.18 7.93 -2.39 -0.02 2.16 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.07 2.25 7.58 -2.38 -0.02 2.23 16 33 H 0.42 5.09 8.62 -92.71 -0.80 4.29 16 34 H 0.44 3.91 8.83 -92.71 -0.82 3.09 16 35 H 0.42 3.82 8.31 -92.71 -0.77 3.05 16 36 H 0.41 3.53 8.93 -92.71 -0.83 2.70 16 37 H 0.20 3.52 7.99 -2.91 -0.02 3.49 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.06 3.14 6.04 -2.39 -0.01 3.12 16 41 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 Total: -1.00 -70.63 357.19 -3.31 -73.94 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -2.08 Total: 13.51 kcal Atomic # 6 Polarization: 21.92 SS G_CDS: 7.39 Total: 29.31 kcal Atomic # 7 Polarization: -124.67 SS G_CDS: -9.38 Total: -134.05 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.13 Total: -32.77 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 6.07 SS G_CDS: -1.15 Total: 4.93 kcal Total: -70.63 -3.31 -73.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675171705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.903 kcal (2) G-P(sol) polarization free energy of solvation -70.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds