Wall clock time and date at job start Tue Mar 31 2020 22:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00507 * 2 1 4 4 H 1.48502 * 109.47323 * 274.35143 * 3 2 1 5 5 H 1.48497 * 109.47157 * 34.35364 * 3 2 1 6 6 H 1.48496 * 109.47300 * 154.35181 * 3 2 1 7 7 C 1.38823 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99818 * 162.59686 * 7 2 1 9 9 N 1.36929 * 119.99710 * 342.59309 * 7 2 1 10 10 C 1.46932 * 120.62923 * 152.28799 * 9 7 2 11 11 C 1.53193 * 108.89365 * 126.33970 * 10 9 7 12 12 C 1.53349 * 109.14947 * 54.58000 * 11 10 9 13 13 N 1.46500 * 109.42211 * 178.67019 * 12 11 10 14 14 C 1.34771 * 120.00217 * 275.13086 * 13 12 11 15 15 O 1.21568 * 120.00209 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99801 * 179.97438 * 14 13 12 17 17 C 1.38373 * 119.99784 * 179.97438 * 16 14 13 18 18 N 1.30127 * 124.74454 * 0.02744 * 17 16 14 19 19 C 1.30871 * 117.28958 * 179.97438 * 18 17 16 20 20 C 1.36708 * 114.02395 * 0.02562 * 19 18 17 21 21 C 1.46317 * 126.12237 * 180.02562 * 20 19 18 22 22 N 1.34772 * 119.99787 * 179.97438 * 21 20 19 23 23 O 1.21730 * 119.99818 * 359.97438 * 21 20 19 24 24 S 1.70924 * 124.74292 * 179.72722 * 17 16 14 25 25 C 1.53038 * 109.60966 * 298.71388 * 12 11 10 26 26 C 1.46927 * 120.63500 * 332.30825 * 9 7 2 27 27 H 0.97000 * 119.99465 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.58789 * 246.20114 * 10 9 7 29 29 H 1.09000 * 109.58152 * 6.48462 * 10 9 7 30 30 H 1.08996 * 109.49449 * 174.66041 * 11 10 9 31 31 H 1.08996 * 109.49932 * 294.75815 * 11 10 9 32 32 H 1.09005 * 109.42157 * 58.74728 * 12 11 10 33 33 H 0.97001 * 119.99658 * 95.12721 * 13 12 11 34 34 H 0.96992 * 120.00284 * 0.02562 * 16 14 13 35 35 H 1.08003 * 122.98734 * 179.97438 * 19 18 17 36 36 H 0.97001 * 120.00254 * 0.02562 * 22 21 20 37 37 H 0.96995 * 119.99868 * 180.02562 * 22 21 20 38 38 H 1.09002 * 109.49898 * 301.42152 * 25 12 11 39 39 H 1.09001 * 109.50239 * 181.32239 * 25 12 11 40 40 H 1.08997 * 109.58712 * 353.38030 * 26 9 7 41 41 H 1.09003 * 109.58223 * 113.65521 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4059 2.0994 -1.3960 5 1 1.4969 2.6243 0.7900 6 1 3.5908 1.4151 0.6060 7 6 2.0102 -1.2023 -0.0005 8 1 3.0531 -1.2236 -0.2803 9 7 1.3724 -2.3611 0.3537 10 6 1.8185 -3.6547 -0.1814 11 6 2.0771 -4.6120 0.9864 12 6 0.8196 -4.6900 1.8607 13 7 1.0495 -5.6285 2.9619 14 6 0.8486 -6.9481 2.7757 15 8 0.4763 -7.3596 1.6941 16 7 1.0606 -7.8115 3.7887 17 6 0.8538 -9.1663 3.5976 18 7 0.4572 -9.7059 2.4819 19 6 0.3092 -11.0061 2.4636 20 6 0.6012 -11.6163 3.6515 21 6 0.5271 -13.0518 3.9250 22 7 0.8453 -13.5222 5.1472 23 8 0.1781 -13.8211 3.0485 24 16 1.0908 -10.3657 4.7920 25 6 0.5025 -3.3049 2.4290 26 6 0.2288 -2.3345 1.2757 27 1 -0.4849 0.8401 0.0004 28 1 1.0455 -4.0685 -0.8288 29 1 2.7374 -3.5171 -0.7513 30 1 2.3168 -5.6021 0.5989 31 1 2.9115 -4.2421 1.5822 32 1 -0.0201 -5.0361 1.2579 33 1 1.3462 -5.3001 3.8250 34 1 1.3572 -7.4831 4.6517 35 1 -0.0156 -11.5486 1.5880 36 1 1.1230 -12.9091 5.8457 37 1 0.7965 -14.4738 5.3284 38 1 1.3517 -2.9474 3.0114 39 1 -0.3777 -3.3669 3.0689 40 1 0.1000 -1.3262 1.6692 41 1 -0.6744 -2.6382 0.7463 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675575520.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:13 Heat of formation + Delta-G solvation = 15.045387 kcal Electronic energy + Delta-G solvation = -26142.482480 eV Core-core repulsion = 22185.437639 eV Total energy + Delta-G solvation = -3957.044841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.98033 -39.99235 -39.01432 -37.55682 -35.20510 -34.53042 -34.13423 -32.19142 -30.38249 -29.95201 -29.29667 -26.21982 -24.89411 -23.41308 -22.38351 -22.12770 -21.29673 -20.00086 -19.82219 -19.33574 -18.37537 -17.70395 -16.97977 -16.46166 -16.30021 -16.11099 -15.41757 -15.20218 -14.89579 -14.74429 -14.46730 -14.21865 -14.01432 -13.76114 -13.58681 -13.04428 -12.75531 -12.41923 -12.03917 -11.52456 -11.25209 -11.17182 -10.95354 -10.80687 -10.74097 -10.57409 -10.44775 -10.31415 -10.21122 -10.08604 -9.85203 -9.83456 -9.70224 -9.57260 -8.92027 -8.57579 -8.48194 -6.72835 -5.83136 -3.24532 -0.07715 0.35773 1.06175 2.14884 2.23134 2.86090 3.05969 3.16623 3.34702 3.42301 3.44243 3.66257 4.33472 4.46664 4.58738 4.90388 5.25219 5.33582 5.43207 5.49494 5.51916 5.79167 5.80439 6.00414 6.14000 6.19116 6.26041 6.27672 6.48752 6.51240 6.54608 6.75498 6.77153 6.82751 6.96424 7.26430 7.34147 7.57041 7.74691 7.76309 7.78043 8.37861 8.40884 9.17130 9.80409 10.37093 11.25939 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.044140 B = 0.001904 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.191291 B =14703.462277 C =14919.618964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.147 3.853 11 C -0.140 4.140 12 C 0.168 3.832 13 N -0.728 5.728 14 C 0.691 3.309 15 O -0.518 6.518 16 N -0.641 5.641 17 C 0.324 3.676 18 N -0.481 5.481 19 C 0.175 3.825 20 C -0.341 4.341 21 C 0.611 3.389 22 N -0.852 5.852 23 O -0.533 6.533 24 S 0.148 5.852 25 C -0.146 4.146 26 C 0.174 3.826 27 H 0.254 0.746 28 H 0.022 0.978 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.393 0.607 34 H 0.419 0.581 35 H 0.193 0.807 36 H 0.398 0.602 37 H 0.408 0.592 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.093 0.907 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.985 -21.128 17.518 27.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.020 3.980 11 C -0.181 4.181 12 C 0.065 3.935 13 N -0.383 5.383 14 C 0.389 3.611 15 O -0.387 6.387 16 N -0.294 5.294 17 C -0.044 4.044 18 N -0.201 5.201 19 C 0.015 3.985 20 C -0.467 4.467 21 C 0.396 3.604 22 N -0.416 5.416 23 O -0.411 6.411 24 S 0.399 5.601 25 C -0.186 4.186 26 C 0.047 3.953 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.227 0.773 34 H 0.257 0.743 35 H 0.210 0.790 36 H 0.226 0.774 37 H 0.240 0.760 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.111 0.889 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 2.531 -21.112 16.384 26.843 hybrid contribution 0.594 0.751 0.674 1.171 sum 3.126 -20.361 17.058 26.745 Atomic orbital electron populations 1.70028 1.05251 1.25546 1.53888 1.25048 0.95289 0.98454 1.00923 0.86290 0.79171 0.83695 0.77677 1.21431 1.21570 1.20465 1.19183 0.92765 0.84780 1.41443 0.91614 1.44103 1.35833 1.01535 1.50039 1.20876 0.98024 0.86475 0.92633 1.22460 0.97004 0.99725 0.98862 1.21126 0.98706 0.87517 0.86193 1.45629 1.71943 1.04042 1.16648 1.16085 0.79793 0.81501 0.83764 1.91093 1.48573 1.76281 1.22766 1.42375 1.68863 1.01870 1.16243 1.23729 0.97519 0.90165 0.92963 1.66482 1.20150 1.10798 1.22643 1.22476 0.91868 0.87117 0.97044 1.25471 1.24518 0.97617 0.99065 1.16527 0.76100 0.85334 0.82418 1.43690 1.72165 1.12737 1.12985 1.90908 1.47762 1.57253 1.45158 1.83576 1.65006 0.97192 1.14364 1.22558 1.00596 0.94373 1.01034 1.20760 0.88991 0.98020 0.87537 0.93584 0.96036 0.92493 0.92545 0.92311 0.89684 0.77334 0.74346 0.78998 0.77356 0.76022 0.92069 0.92616 0.88890 0.95956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.62 11.19 55.49 0.62 -25.00 16 2 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 3 Si 0.90 21.18 29.59 -169.99 -5.03 16.15 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.25 -6.75 9.58 -15.06 -0.14 -6.90 16 8 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 9 N -0.59 -14.42 3.00 -172.31 -0.52 -14.93 16 10 C 0.15 3.09 6.50 -3.71 -0.02 3.07 16 11 C -0.14 -2.46 5.68 -26.45 -0.15 -2.61 16 12 C 0.17 2.74 2.42 -67.73 -0.16 2.58 16 13 N -0.73 -9.05 5.08 -58.48 -0.30 -9.35 16 14 C 0.69 9.55 8.49 -86.93 -0.74 8.81 16 15 O -0.52 -9.70 14.60 5.31 0.08 -9.62 16 16 N -0.64 -6.13 5.38 -17.55 -0.09 -6.23 16 17 C 0.32 3.47 7.98 -87.55 -0.70 2.77 16 18 N -0.48 -6.61 8.55 -14.66 -0.13 -6.73 16 19 C 0.18 2.03 11.15 -18.51 -0.21 1.82 16 20 C -0.34 -3.21 6.50 -36.89 -0.24 -3.45 16 21 C 0.61 5.78 8.05 -13.01 -0.10 5.67 16 22 N -0.85 -4.31 8.87 30.18 0.27 -4.04 16 23 O -0.53 -7.07 17.70 5.16 0.09 -6.98 16 24 S 0.15 0.96 22.33 -107.50 -2.40 -1.44 16 25 C -0.15 -2.48 5.55 -26.61 -0.15 -2.63 16 26 C 0.17 3.93 5.31 -3.71 -0.02 3.91 16 27 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.09 1.60 7.58 -51.93 -0.39 1.21 16 33 H 0.39 3.48 8.62 -40.82 -0.35 3.13 16 34 H 0.42 2.09 8.83 -40.82 -0.36 1.73 16 35 H 0.19 2.04 8.06 -52.48 -0.42 1.62 16 36 H 0.40 1.07 8.00 -40.82 -0.33 0.74 16 37 H 0.41 1.45 8.93 -40.82 -0.36 1.09 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 2.35 6.04 -51.93 -0.31 2.03 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 358.78 15.07 5.41 5.41 Total: -1.00 -36.24 358.78 -9.75 -45.99 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.03 Total: 3.77 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: -2.72 Total: 13.00 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: -0.14 Total: -66.28 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.17 Total: -16.60 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.40 Total: -1.44 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.24 -9.75 -45.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675575520.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.038 kcal (2) G-P(sol) polarization free energy of solvation -36.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds